KCC000249A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000249A_C01 KCC000249A_c01
GCTCATAGATAACGAAAGCTGCGTTGTGACAAAGATGTTGTGCAAGCACGCTGTCGTCGC
TCGCGTGCGACGCAGCTCGGCAACGTCATCGGCGCTGGTCGCGCGCTCGACTGCACATGA
TGCAACGGCGCAGAAGAGCTACTACGTGGCGATGAATGTGTTCAAGGTGAAGCCGGAGTC
CGGCAAGGACTTTGAGGAGGTGTGGAAGTCGCGCGAGTCCCGCCTCAAGTCCATGCCCGG
CTTTGTTCGCTTTTCCATGCTCAAATGCGACAACGTGCCCGGCAAGTATGTCTCTCAGTC
CACCTGGGAGTCCAAGGAGGCGTTTGAGGCCTGGACCAAGAGCGGCGCGTTTGCGGCTTC
CCACGGCAGTAGCGGCAGCAGCAGCAGCGGCAGCAGCAGCAGCGGCCACGGGCAGGGCGG
CCACGGCCATGGTCACGGGCAGGGCGGCCACGGGCAGGGCCAGTCTGGCAACAAGCGGTC
CAGCACTATGGAGATGCTGGAGCAGCCCCCCGCCCCTGAGTTCTACTCCACAGTCACCAT
CACCGAGTAAGGACGCAGCTGTGGGCGTAGTACCATGTGGTATCCGGGAGTCGACAAGCT
GTGGGCGGGCTGACGACCGAGGGGTTTTGACGCTGCGGTTGGACACACGGGGGCTGAAGG
TG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000249A_C01 KCC000249A_c01
         (662 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_386528.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium m...    84  2e-15
ref|ZP_00029337.1| COG2329: Conserved protein involved in polyke...    78  1e-13
ref|ZP_00011696.1| COG2329: Conserved protein involved in polyke...    77  2e-13
ref|ZP_00006988.1| COG2329: Conserved protein involved in polyke...    75  9e-13
ref|NP_774063.1| bll7423 [Bradyrhizobium japonicum] gi|27355706|...    74  3e-12

>ref|NP_386528.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
           gi|15075445|emb|CAC47001.1| CONSERVED HYPOTHETICAL
           PROTEIN [Sinorhizobium meliloti]
          Length = 104

 Score = 83.6 bits (205), Expect = 2e-15
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
 Frame = +2

Query: 143 YVAMNVFKVKPESGKDFEEVWKSRESRLKSMPGFVRFSMLKCDNVPGK----YVSQSTWE 310
           Y AMN F+V     + FE VWK+R+S L  MPGF+ F +L+ D+VP +    ++S+S WE
Sbjct: 2   YFAMNRFRVAAGQEEAFEAVWKARDSSLSEMPGFIEFHLLRGDSVPEEGYTPFISKSAWE 61

Query: 311 SKEAFEAWTKSGAFAASHGSSGSSSS 388
           +++AF AWTKS  F A+H S+G + +
Sbjct: 62  NRDAFIAWTKSDNFRAAHRSAGENKA 87

>ref|ZP_00029337.1| COG2329: Conserved protein involved in polyketide biosynthesis
           related to monooxygenase [Burkholderia fungorum]
          Length = 161

 Score = 77.8 bits (190), Expect = 1e-13
 Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
 Frame = +2

Query: 101 ARSTAHDATAQKSYYVAMNVFKVKPESGKDFEEVWKSRESRLKSMPGFVRFSMLKC---- 268
           AR    D     S Y+AMN FKV P S   FE +W +R++ LK +PGFV F +LK     
Sbjct: 45  AREIYRDCKEAFSMYIAMNRFKVTPGSEAAFEHLWTTRDTHLKEVPGFVEFHLLKGPQKE 104

Query: 269 DNVPGKYVSQSTWESKEAFEAWTKSGAFAASHGSSGSSS 385
           D+V   Y S + W+   +FE WTKS AF A+H ++G  +
Sbjct: 105 DHV--LYSSHTVWKDYTSFEGWTKSEAFRAAHRNAGGDN 141

>ref|ZP_00011696.1| COG2329: Conserved protein involved in polyketide biosynthesis
           related to monooxygenase [Rhodopseudomonas palustris]
          Length = 110

 Score = 77.4 bits (189), Expect = 2e-13
 Identities = 39/91 (42%), Positives = 53/91 (57%), Gaps = 2/91 (2%)
 Frame = +2

Query: 143 YVAMNVFKVKPESGKDFEEVWKSRESRLKSMPGFVRFSMLKCDNVPGK--YVSQSTWESK 316
           ++AMN F+VK  + + FEE+W +RES L  M GFV F +LK         Y + +TW  K
Sbjct: 2   FIAMNRFQVKRGAEQTFEEIWATRESYLSEMDGFVEFHLLKGPPADDHTLYATHTTWADK 61

Query: 317 EAFEAWTKSGAFAASHGSSGSSSSGSSSSGH 409
            AFEAWT+S  F  SH  +G+ +  S   GH
Sbjct: 62  AAFEAWTQSEQFRTSHARAGNDTGQSLYLGH 92

>ref|ZP_00006988.1| COG2329: Conserved protein involved in polyketide biosynthesis
           related to monooxygenase [Rhodobacter sphaeroides]
          Length = 104

 Score = 75.1 bits (183), Expect = 9e-13
 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
 Frame = +2

Query: 143 YVAMNVFKVKPESGKDFEEVWKSRESRLKSMPGFVRFSMLKCDNVPG--KYVSQSTWESK 316
           Y+ MN F+VK      FE VWK+R+S+L  +PGFV F +++  +  G   Y S + WES+
Sbjct: 2   YLTMNRFRVKTGQEAAFEAVWKNRDSQLPQVPGFVAFHLMRGPDREGYRLYASHTAWESE 61

Query: 317 EAFEAWTKSGAFAASHGSSGSSS 385
           EAF AWT+S AF  +H  +G ++
Sbjct: 62  EAFIAWTRSEAFRTAHRGAGGNA 84

>ref|NP_774063.1| bll7423 [Bradyrhizobium japonicum] gi|27355706|dbj|BAC52688.1|
           bll7423 [Bradyrhizobium japonicum USDA 110]
          Length = 107

 Score = 73.6 bits (179), Expect = 3e-12
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
 Frame = +2

Query: 143 YVAMNVFKVKPESGKDFEEVWKSRESRLKSMPGFVRFSMLKCDNVPGK--YVSQSTWESK 316
           Y+AMN F+V   S   FE+VW SR++ L  +PGFV F +L+   +     Y S + W + 
Sbjct: 2   YIAMNRFRVAKGSEAAFEQVWLSRDTHLDKVPGFVEFHLLRGPELEDHTLYASHTVWANH 61

Query: 317 EAFEAWTKSGAFAASHGSSGSS 382
            AFEAWTKS AF A+H  +G +
Sbjct: 62  AAFEAWTKSEAFRAAHHKAGDN 83



EST assemble image


clone accession position
1 LC034c07_r AV621316 1 603
2 CM067b08_r AV390908 66 561
3 LC079c03_r AV624546 71 596
4 LC046g11_r AV622226 74 580
5 LC084g06_r AV624935 84 574
6 LC090b02_r AV625262 84 629
7 LC017b11_r AV620072 93 583
8 LC037g11_r AV621560 107 597
9 CL13d06_r AV393910 109 628
10 LC017e09_r AV620099 111 605
11 HC070f06_r AV637247 114 306
12 CM079b04_r AV391990 214 774




Chlamydomonas reinhardtii
Kazusa DNA Research Institute