KCC000246A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000246A_C01 KCC000246A_c01
gttatAGTGAGCATATATACACAGTTGCGGATAGATAGGAGCTTCTCGTTCATTGTTCTT
GTCGCTTCTCTCCCGAGCCCAACGATTTCTGCCGATTTCTTTACATACACCTCGAGGGCT
GCAAGTCAGGGCAAGCACATGCTAGCAATCGACCTTTGTGCTGCTTAGGATGCCCGAGCC
AGGAGCTAGGCAACGCCCTCAACGCGCAGCGGCAAAGGAGGCCCAGCAGCGTATAGCAGC
TCAGGCTCAGGGCCGGGACGTGCATCCCCTTGAAGAGGAGCCCAGCCCGGACGGACCGCT
GGTGCTCACGAACGGGCAGAGGAACCAGTCAACCGACCCGAACAAAGAAAACGTAAAGCT
GAACGCACAGGCCAAAGCCGGTGCGCCCAAGGCCCCGCCGAAGGCTGCCTTGGCGCCGCC
CGCGCCTGCAGCGCAGGCAGCCCCTCGGCCTGGGATTCCAGCGGCTTTCGTGGCAGAACC
AAAGGTAGAAGAGCCCGCGGAGGATGGGCCGGACAAGTTCCCTGTGCCCAAGAAGGTGGC
TGTGGGGGGCTCGCCTGCCTACATCCCGGACAAGAAGCTAGGCAAAGGAGGCTTCGGGCA
GGTTTGGCTCGGTCGCCGGGTGATA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000246A_C01 KCC000246A_c01
         (625 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL60199.1|AF443205_1 serine/threonine protein kinase [Chlamy...   311  6e-84
dbj|BAC83610.1| putative casein kinase 1, delta isoform 1 [Oryza...    64  1e-09
gb|AAO37965.1| putative serine/threonine protein kinase [Oryza s...    61  2e-08
dbj|BAB91945.1| putative casein kinase-like protein [Oryza sativ...    59  8e-08
ref|NP_187044.1| casein kinase -related [Arabidopsis thaliana] g...    57  2e-07

>gb|AAL60199.1|AF443205_1 serine/threonine protein kinase [Chlamydomonas reinhardtii]
          Length = 699

 Score =  311 bits (796), Expect = 6e-84
 Identities = 152/152 (100%), Positives = 152/152 (100%)
 Frame = +2

Query: 170 MPEPGARQRPQRAAAKEAQQRIAAQAQGRDVHPLEEEPSPDGPLVLTNGQRNQSTDPNKE 349
           MPEPGARQRPQRAAAKEAQQRIAAQAQGRDVHPLEEEPSPDGPLVLTNGQRNQSTDPNKE
Sbjct: 1   MPEPGARQRPQRAAAKEAQQRIAAQAQGRDVHPLEEEPSPDGPLVLTNGQRNQSTDPNKE 60

Query: 350 NVKLNAQAKAGAPKAPPKAALAPPAPAAQAAPRPGIPAAFVAEPKVEEPAEDGPDKFPVP 529
           NVKLNAQAKAGAPKAPPKAALAPPAPAAQAAPRPGIPAAFVAEPKVEEPAEDGPDKFPVP
Sbjct: 61  NVKLNAQAKAGAPKAPPKAALAPPAPAAQAAPRPGIPAAFVAEPKVEEPAEDGPDKFPVP 120

Query: 530 KKVAVGGSPAYIPDKKLGKGGFGQVWLGRRVI 625
           KKVAVGGSPAYIPDKKLGKGGFGQVWLGRRVI
Sbjct: 121 KKVAVGGSPAYIPDKKLGKGGFGQVWLGRRVI 152

>dbj|BAC83610.1| putative casein kinase 1, delta isoform 1 [Oryza sativa (japonica
           cultivar-group)]
          Length = 699

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 53/165 (32%), Positives = 74/165 (44%), Gaps = 25/165 (15%)
 Frame = +2

Query: 203 RAAAKEAQQRIAAQAQGRDVHPLEEEPSPDGPLVLTNGQRNQSTDPNKENVKLNAQAKAG 382
           R++ ++A+ R     +  D  P E+   P  P     G+R     P     +  A  + G
Sbjct: 5   RSSTRQARLR---SRKPDDQKPAEQAAKPALPAPQRAGKR---VPPPAIRGRKGAAGRRG 58

Query: 383 --APKAPPKAALAPPAPAAQA---APRPGIPAAFVAEPK-VEEP---------------- 496
             AP+   KA       A Q    +P+P +  A V E K V+ P                
Sbjct: 59  GAAPRGRRKAVEVVDLEAGQGRGDSPKPVVGQAVVGEAKNVKAPEVVANKGLRMDGESAE 118

Query: 497 ---AEDGPDKFPVPKKVAVGGSPAYIPDKKLGKGGFGQVWLGRRV 622
              A D     PVP+++ VG SP YI D+KLGKGGFGQV++GRRV
Sbjct: 119 KLVAADDESSLPVPERIQVGNSPEYITDRKLGKGGFGQVYVGRRV 163

>gb|AAO37965.1| putative serine/threonine protein kinase [Oryza sativa (japonica
           cultivar-group)]
          Length = 707

 Score = 60.8 bits (146), Expect = 2e-08
 Identities = 28/42 (66%), Positives = 33/42 (77%)
 Frame = +2

Query: 497 AEDGPDKFPVPKKVAVGGSPAYIPDKKLGKGGFGQVWLGRRV 622
           AED     PVP++V VG SP YI D+KLGKGGFGQV++GRRV
Sbjct: 126 AEDESTTTPVPERVQVGNSPEYITDRKLGKGGFGQVYVGRRV 167

>dbj|BAB91945.1| putative casein kinase-like protein [Oryza sativa (japonica
           cultivar-group)] gi|21902033|dbj|BAC05582.1| putative
           casein kinase-like protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 545

 Score = 58.5 bits (140), Expect = 8e-08
 Identities = 45/122 (36%), Positives = 52/122 (41%), Gaps = 34/122 (27%)
 Frame = +2

Query: 362 NAQAKAGAPKAPPKAALAPPAPAAQAAPRPGIPAAFVAEPKVEEPAED------------ 505
           N  A A A  APP      PA   +AA R     A  A P+ EE  E+            
Sbjct: 17  NPAAAAAAAPAPP------PARRRRAARRKEPEVAVEAAPEAEEGREEEIEVADLGREGG 70

Query: 506 ------GPDK----------------FPVPKKVAVGGSPAYIPDKKLGKGGFGQVWLGRR 619
                 GPD                  PVP  V VG SP Y  DKKLGKGGFGQV++GRR
Sbjct: 71  GEKKMEGPDSGARSADKQAVEDEGNTTPVPDTVQVGSSPKYRVDKKLGKGGFGQVYVGRR 130

Query: 620 VI 625
           ++
Sbjct: 131 ML 132

>ref|NP_187044.1| casein kinase -related [Arabidopsis thaliana]
           gi|6223639|gb|AAF05853.1|AC011698_4 putative casein
           kinase [Arabidopsis thaliana]
          Length = 701

 Score = 57.4 bits (137), Expect = 2e-07
 Identities = 42/125 (33%), Positives = 57/125 (45%)
 Frame = +2

Query: 248 QGRDVHPLEEEPSPDGPLVLTNGQRNQSTDPNKENVKLNAQAKAGAPKAPPKAALAPPAP 427
           +GR    L +  +P  P     G+  + TD   E  ++        P A    A  P   
Sbjct: 44  RGRGNAALAKGAAPPRPTAAGRGRGIRLTDLEPEPCEVR-------PAAGAIGATEPALN 96

Query: 428 AAQAAPRPGIPAAFVAEPKVEEPAEDGPDKFPVPKKVAVGGSPAYIPDKKLGKGGFGQVW 607
             +      I A   +  KV    ED     PVP++V VG SP Y  ++KLGKGGFGQV+
Sbjct: 97  RVEGVADKDIAAEGGSAEKVVGMEEDS-SMGPVPERVQVGNSPVYKTERKLGKGGFGQVY 155

Query: 608 LGRRV 622
           +GRRV
Sbjct: 156 VGRRV 160



EST assemble image


clone accession position
1 LCL092g03_r AV631366 1 287
2 LCL049g12_r AV628974 6 288
3 LCL014e01_r AV626729 6 266
4 LCL044f02_r AV628618 6 295
5 LCL099c12_r AV631758 12 530
6 LCL091h07_r AV631314 18 295
7 LCL024g12_r AV627313 20 436
8 LCL077f01_r AV630344 20 407
9 CL12h10_r AV393845 22 343
10 LCL028a06_r AV627523 25 294
11 LCL100d02_r AV631821 35 508
12 LCL045c08_r AV628663 38 478
13 LCL084c10_r AV630786 38 465
14 LCL100d03_r AV631822 70 531
15 CL57b10_r AV396265 88 627
16 CL70a04_r AV396821 104 621




Chlamydomonas reinhardtii
Kazusa DNA Research Institute