Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000244A_C03 KCC000244A_c03
(858 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA35682.1| ribosmal protein small subunit 109 1e-41
ref|XP_124083.1| ribosomal protein S3a [Mus musculus] gi|3122836... 109 1e-41
ref|NP_000997.1| ribosomal protein S3a; 40S ribosomal protein S3... 109 1e-41
ref|NP_058849.1| ribosomal protein S3a [Rattus norvegicus] gi|13... 109 1e-41
pir||JC5250 ribosomal protein S3a, cytosolic [validated] - rat 109 2e-41
>gb|AAA35682.1| ribosmal protein small subunit
Length = 264
Score = 109 bits (272), Expect(2) = 1e-41
Identities = 51/73 (69%), Positives = 63/73 (85%)
Frame = +3
Query: 525 QIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLK 704
Q+RQIRKKMMEI+TRE + DLKE+V K IP+SIGKDIEK+CQ IYPL + F+RKVK+LK
Sbjct: 160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 219
Query: 705 APKFDITKLMEVH 743
PKF++ KLME+H
Sbjct: 220 KPKFELGKLMELH 232
Score = 83.6 bits (205), Expect(2) = 1e-41
Identities = 63/179 (35%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Frame = +2
Query: 35 GKNKRISNGVKKWSARRSASDPFAKNDLV*HQGCPPCSLSSQRGQDPGDQDAVVPR-FAV 211
GKNKR++ G KK A++ DPF+K D D P F +
Sbjct: 4 GKNKRLTKGGKK-GAKKKVVDPFSKKDWY---------------------DVKAPAMFNI 41
Query: 212 GGC*RCLCVR---------GLPGLTWQ------KNEDDAFRKMRLRVE*RAVAATASPTS 346
+ L R GL G ++ +N++ AFRK +L E +
Sbjct: 42 RNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFH 101
Query: 347 GAWTSLRTSCARWSGKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQCQIKRTCYAQRR 523
G + C+ KWQT+IEAHVDVKTTDGY LR+FC+ FTKKR QI++T YAQ +
Sbjct: 102 GMDLTRDKMCSMVK-KWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ 159
Score = 41.6 bits (96), Expect = 0.017
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = +3
Query: 99 PSPRMTWYDIKAAHHVHCPRNVGKTLVTRTQWYQDLLSEAAEGACVFEVSLA 254
P + WYD+KA + RN+GKTLVTRTQ + + S+ +G VFEVSLA
Sbjct: 24 PFSKKDWYDVKAPAMFNI-RNIGKTLVTRTQGTK-IASDGLKGR-VFEVSLA 72
>ref|XP_124083.1| ribosomal protein S3a [Mus musculus]
gi|3122836|sp|P97351|RS3A_MOUSE 40S ribosomal protein
S3A gi|1841932|emb|CAB05955.1| ribosomal protein S3a
[Mus musculus] gi|12846166|dbj|BAB27055.1| unnamed
protein product [Mus musculus]
gi|12849026|dbj|BAB28176.1| unnamed protein product [Mus
musculus] gi|25123233|gb|AAH39659.1| Ribosomal protein
S3a [Mus musculus] gi|26341358|dbj|BAC34341.1| unnamed
protein product [Mus musculus]
gi|26353044|dbj|BAC40152.1| unnamed protein product [Mus
musculus]
Length = 264
Score = 109 bits (272), Expect(2) = 1e-41
Identities = 51/73 (69%), Positives = 63/73 (85%)
Frame = +3
Query: 525 QIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLK 704
Q+RQIRKKMMEI+TRE + DLKE+V K IP+SIGKDIEK+CQ IYPL + F+RKVK+LK
Sbjct: 160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 219
Query: 705 APKFDITKLMEVH 743
PKF++ KLME+H
Sbjct: 220 KPKFELGKLMELH 232
Score = 83.6 bits (205), Expect(2) = 1e-41
Identities = 63/179 (35%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Frame = +2
Query: 35 GKNKRISNGVKKWSARRSASDPFAKNDLV*HQGCPPCSLSSQRGQDPGDQDAVVPR-FAV 211
GKNKR++ G KK A++ DPF+K D D P F +
Sbjct: 4 GKNKRLTKGGKK-GAKKKVVDPFSKKDWY---------------------DVKAPAMFNI 41
Query: 212 GGC*RCLCVR---------GLPGLTWQ------KNEDDAFRKMRLRVE*RAVAATASPTS 346
+ L R GL G ++ +N++ AFRK +L E +
Sbjct: 42 RNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFH 101
Query: 347 GAWTSLRTSCARWSGKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQCQIKRTCYAQRR 523
G + C+ KWQT+IEAHVDVKTTDGY LR+FC+ FTKKR QI++T YAQ +
Sbjct: 102 GMDLTRDKMCSMVK-KWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ 159
Score = 41.6 bits (96), Expect = 0.017
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = +3
Query: 99 PSPRMTWYDIKAAHHVHCPRNVGKTLVTRTQWYQDLLSEAAEGACVFEVSLA 254
P + WYD+KA + RN+GKTLVTRTQ + + S+ +G VFEVSLA
Sbjct: 24 PFSKKDWYDVKAPAMFNI-RNIGKTLVTRTQGTK-IASDGLKGR-VFEVSLA 72
>ref|NP_000997.1| ribosomal protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 [Homo sapiens]
gi|33354240|ref|NP_877578.1| ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1 [Homo sapiens] gi|1350985|sp|P49241|RS3A_HUMAN
40S ribosomal protein S3a gi|2136122|pir||JC4662
ribosomal protein S3a, cytosolic - human
gi|182775|gb|AAA58487.1| v-fos transformation effector
protein gi|292447|gb|AAA60290.1| ribosomal protein S3a
gi|854179|emb|CAA60827.1| ribosomal protein S3a [Homo
sapiens] gi|12652897|gb|AAH00204.1| Ribosomal protein
S3a [Homo sapiens] gi|12804577|gb|AAH01708.1| Ribosomal
protein S3a [Homo sapiens] gi|13436410|gb|AAH04981.1|
Ribosomal protein S3a [Homo sapiens]
gi|13623405|gb|AAH06298.1| Ribosomal protein S3a [Homo
sapiens] gi|14327994|gb|AAH09219.1|AAH09219 ribosomal
protein S3A [Homo sapiens]
gi|14424796|gb|AAH09404.1|AAH09404 ribosomal protein S3A
[Homo sapiens] gi|16877771|gb|AAH17123.1| Ribosomal
protein S3a [Homo sapiens] gi|17512179|gb|AAH19072.1|
Ribosomal protein S3a [Homo sapiens]
gi|20988813|gb|AAH30161.1| Ribosomal protein S3a [Homo
sapiens]
Length = 264
Score = 109 bits (272), Expect(2) = 1e-41
Identities = 51/73 (69%), Positives = 63/73 (85%)
Frame = +3
Query: 525 QIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLK 704
Q+RQIRKKMMEI+TRE + DLKE+V K IP+SIGKDIEK+CQ IYPL + F+RKVK+LK
Sbjct: 160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 219
Query: 705 APKFDITKLMEVH 743
PKF++ KLME+H
Sbjct: 220 KPKFELGKLMELH 232
Score = 83.6 bits (205), Expect(2) = 1e-41
Identities = 63/179 (35%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Frame = +2
Query: 35 GKNKRISNGVKKWSARRSASDPFAKNDLV*HQGCPPCSLSSQRGQDPGDQDAVVPR-FAV 211
GKNKR++ G KK A++ DPF+K D D P F +
Sbjct: 4 GKNKRLTKGGKK-GAKKKVVDPFSKKDWY---------------------DVKAPAMFNI 41
Query: 212 GGC*RCLCVR---------GLPGLTWQ------KNEDDAFRKMRLRVE*RAVAATASPTS 346
+ L R GL G ++ +N++ AFRK +L E +
Sbjct: 42 RNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFH 101
Query: 347 GAWTSLRTSCARWSGKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQCQIKRTCYAQRR 523
G + C+ KWQT+IEAHVDVKTTDGY LR+FC+ FTKKR QI++T YAQ +
Sbjct: 102 GMDLTRDKMCSMVK-KWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ 159
Score = 41.6 bits (96), Expect = 0.017
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = +3
Query: 99 PSPRMTWYDIKAAHHVHCPRNVGKTLVTRTQWYQDLLSEAAEGACVFEVSLA 254
P + WYD+KA + RN+GKTLVTRTQ + + S+ +G VFEVSLA
Sbjct: 24 PFSKKDWYDVKAPAMFNI-RNIGKTLVTRTQGTK-IASDGLKGR-VFEVSLA 72
>ref|NP_058849.1| ribosomal protein S3a [Rattus norvegicus]
gi|1350987|sp|P49242|RS3A_RAT 40S RIBOSOMAL PROTEIN S3A
(V-FOS TRANSFORMATION EFFECTOR PROTEIN)
gi|207649|gb|AAA42335.1| v-fos transformation effector
protein gi|495140|emb|CAA53004.1| rat ribosomal protein
S3a [Rattus norvegicus] gi|37231726|gb|AAH58483.1|
Ribosomal protein S3a [Rattus norvegicus]
Length = 264
Score = 109 bits (272), Expect(2) = 1e-41
Identities = 51/73 (69%), Positives = 63/73 (85%)
Frame = +3
Query: 525 QIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLK 704
Q+RQIRKKMMEI+TRE + DLKE+V K IP+SIGKDIEK+CQ IYPL + F+RKVK+LK
Sbjct: 160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 219
Query: 705 APKFDITKLMEVH 743
PKF++ KLME+H
Sbjct: 220 KPKFELGKLMELH 232
Score = 83.6 bits (205), Expect(2) = 1e-41
Identities = 63/179 (35%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Frame = +2
Query: 35 GKNKRISNGVKKWSARRSASDPFAKNDLV*HQGCPPCSLSSQRGQDPGDQDAVVPR-FAV 211
GKNKR++ G KK A++ DPF+K D D P F +
Sbjct: 4 GKNKRLTKGGKK-GAKKKVVDPFSKKDWY---------------------DVKAPAMFNI 41
Query: 212 GGC*RCLCVR---------GLPGLTWQ------KNEDDAFRKMRLRVE*RAVAATASPTS 346
+ L R GL G ++ +N++ AFRK +L E +
Sbjct: 42 RNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFH 101
Query: 347 GAWTSLRTSCARWSGKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQCQIKRTCYAQRR 523
G + C+ KWQT+IEAHVDVKTTDGY LR+FC+ FTKKR QI++T YAQ +
Sbjct: 102 GMDLTRDKMCSMVK-KWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ 159
Score = 41.6 bits (96), Expect = 0.017
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = +3
Query: 99 PSPRMTWYDIKAAHHVHCPRNVGKTLVTRTQWYQDLLSEAAEGACVFEVSLA 254
P + WYD+KA + RN+GKTLVTRTQ + + S+ +G VFEVSLA
Sbjct: 24 PFSKKDWYDVKAPAMFNI-RNIGKTLVTRTQGTK-IASDGLKGR-VFEVSLA 72
>pir||JC5250 ribosomal protein S3a, cytosolic [validated] - rat
Length = 264
Score = 109 bits (272), Expect(2) = 2e-41
Identities = 51/73 (69%), Positives = 63/73 (85%)
Frame = +3
Query: 525 QIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLK 704
Q+RQIRKKMMEI+TRE + DLKE+V K IP+SIGKDIEK+CQ IYPL + F+RKVK+LK
Sbjct: 160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLK 219
Query: 705 APKFDITKLMEVH 743
PKF++ KLME+H
Sbjct: 220 KPKFELGKLMELH 232
Score = 82.8 bits (203), Expect(2) = 2e-41
Identities = 60/163 (36%), Positives = 84/163 (50%)
Frame = +2
Query: 35 GKNKRISNGVKKWSARRSASDPFAKNDLV*HQGCPPCSLSSQRGQDPGDQDAVVPRFAVG 214
GKNKR++ G KK A++ DPF+K D ++ P + + + A
Sbjct: 4 GKNKRLTKGGKK-GAKKKVVDPFSKKDW--YEVKAPAMFNIRNIGKTLVTRTQGTKIASD 60
Query: 215 GC*RCLCVRGLPGLTWQKNEDDAFRKMRLRVE*RAVAATASPTSGAWTSLRTSCARWSGK 394
G + L L +N++ AFRK +L E + G + C+ K
Sbjct: 61 GLKGRVFEVSLADL---QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVK-K 116
Query: 395 WQTLIEAHVDVKTTDGYTLRVFCISFTKKRQCQIKRTCYAQRR 523
WQT+IEAHVDVKTTDGY LR+FC+ FTKKR QI++T YAQ +
Sbjct: 117 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQ 159
Score = 40.0 bits (92), Expect = 0.049
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = +3
Query: 99 PSPRMTWYDIKAAHHVHCPRNVGKTLVTRTQWYQDLLSEAAEGACVFEVSLA 254
P + WY++KA + RN+GKTLVTRTQ + + S+ +G VFEVSLA
Sbjct: 24 PFSKKDWYEVKAPAMFNI-RNIGKTLVTRTQGTK-IASDGLKGR-VFEVSLA 72