KCC000243A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000243A_C01 KCC000243A_c01
CGCCATTGCAGTGTCAGCTCCGTTAACCATCCTGAGCTTTGGAGAACTTCTCAACTCGGC
TCAGGCAGACACAGGTTCCCGCCAGCTCTTTAAGCTTTCCTTAGTCCTGACGCTTCTGCA
CATCTTACTTAGATACCATACTGGCAGCAACGGTCCTGTAAACGGCGAGAGGTGCCTGTG
TTGGTGTCCAGCGGCCCCGATGTCGAATCTGCGTGCGCTCGCGGCTCTTCTGGTTGCTGT
GTTTGCTCTTTTAACCGCAACACCTCAACCAACATGCGCTCAGGAAGAGTTCCAAGGCGT
GGGTATGGTGAAGCTGAAGAGTGCCTTCCGCTTTGTGCGGCCGCCACCCAACCACCGCCC
GCCGCCCTTCCGCAAGCCGCCGCCCGCCGCCTCCCCCTCGCCCGCCTTCACACACGAGGT
TGATTACAACGAGCTTCAGATCCTGTGTCCTCAGGAGGTTGACTCGTCAACGAACTACAC
ACGCGACGACCCGCAATGCGCCGTGCCGCGCGGCTCTGTGGCTGTGGGCGATGAGGCCGA
GGCCGTGCGGGCCGAGTTCCGGCTGCTTAGCGGCGACCTGGTGAACGTGACGCTGGAGGA
GGTGGACGAGTCGGAGCCGGGCAGCCGCCGCCGCATGCTGTCGCAGCTGCGCGAGGAGCT
GGCCACGGGCCGGCGCCTGTTGAACACCGACACCGCACCGCTGCCGGGCAGGAGCTTCCG
GCTCAAGAGCCTGCGTCCGGTCAGGCAGACCGAGCAGAAGGAGATCTACACCGGCACCCC
CATCGACCTCCGCACCGTGGTGTTCATCATGGACTTCAGCGACTGCCGCATGCCGCAGGC
ACCGGCCGTCACCAAGGAGCGTGTCACTCGCGACATGCTCAAGACGTCGGCCTCGCCCGC
CAACAACCTGGCCGGCTACTACAGCACCTGCTCCTACGGCAAGACCATTTTCAACCCCGA
CAACTTCATCGTGGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000243A_C01 KCC000243A_c01
         (976 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P31178|GLE_CHLRE Autolysin precursor (Gametolysin) (Gamete ly...   288  7e-77
dbj|BAB68382.1| gametolysin [Chlamydomonas reinhardtii] gi|15718...   282  5e-75
dbj|BAB68383.1| matrix metalloprotease 2 [Chlamydomonas reinhard...   118  1e-25
dbj|BAB85218.1| matrix metalloproteinase [Volvox carteri f. naga...    62  2e-08
pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [...    52  1e-05

>sp|P31178|GLE_CHLRE Autolysin precursor (Gametolysin) (Gamete lytic enzyme) (GLE)
           gi|541537|pir||A45287 gamete lytic enzyme (EC 3.4.24.-)
           precursor - Chlamydomonas reinhardtii
           gi|167439|gb|AAA33094.1| cell wall lytic enzyme
           gi|217895|dbj|BAA01400.1| GLE preproprotein
           [Chlamydomonas reinhardtii]
          Length = 638

 Score =  288 bits (738), Expect = 7e-77
 Identities = 154/257 (59%), Positives = 189/257 (72%), Gaps = 3/257 (1%)
 Frame = +2

Query: 215 ALAALLVAVFALLTATPQPTCAQEEFQGVGMVKLKSAFRFVRPPPNHRPPPFRKPPPAAS 394
           A AALLVA   L TA   P  AQ E  G GMVK KSAFR++RPPP  RPPPFR+PPPA +
Sbjct: 10  AAAALLVAACVLCTA---PAWAQNETTGTGMVKTKSAFRWIRPPPA-RPPPFRRPPPAQT 65

Query: 395 PSPAFTHEVDYNELQILCPQEVDSSTNYTRDDPQCAVPRGSVAVGDEAEAVRAEFRLLSG 574
           P   + H+V+Y ELQILCPQ +DS T Y  DDP+C VPR +VA G+EA  +R EF LL+G
Sbjct: 66  P---YVHKVEYTELQILCPQTIDSVTGYPMDDPRCNVPRATVAAGEEALTIRNEFELLNG 122

Query: 575 DLVNVTLEEVDESEPGSRRRMLSQLREELATGRRLLNTDTAPLPGRSFRLKSLRPVRQTE 754
           D++NVTLEEVD  E  SRRR+LS +REE  TGR LL T +A LP  +FRLKSL+ + +  
Sbjct: 123 DVLNVTLEEVDTPENPSRRRLLSIIREEQRTGRVLLAT-SAELPTPTFRLKSLKSILKGS 181

Query: 755 QKEIYTGTPIDLRTVVFIMDFSDCRMP--QAPA-VTKERVTRDMLKTSASPANNLAGYYS 925
           QKEIY G PIDLRT+V+IMDFS C++    APA +T E+VT DML+ +++P NNLA YY 
Sbjct: 182 QKEIYAGKPIDLRTIVYIMDFSSCKLSGWSAPATLTPEKVTSDMLRGASAPTNNLANYYG 241

Query: 926 TCSYGKTIFNPDNFIVV 976
            CSY KT+FNPDNF+V+
Sbjct: 242 ACSYEKTLFNPDNFLVL 258

>dbj|BAB68382.1| gametolysin [Chlamydomonas reinhardtii] gi|15718395|dbj|BAB68384.1|
           gametolysin [Chlamydomonas reinhardtii]
          Length = 639

 Score =  282 bits (722), Expect = 5e-75
 Identities = 153/257 (59%), Positives = 188/257 (72%), Gaps = 3/257 (1%)
 Frame = +2

Query: 215 ALAALLVAVFALLTATPQPTCAQEEFQGVGMVKLKSAFRFVRPPPNHRPPPFRKPPPAAS 394
           A AALLVA   L TA   P  AQ E  G GMVK KSAFR++RPPP  RPPPFR+PPPA  
Sbjct: 10  AAAALLVAACVLCTA---PAWAQNETSGTGMVKTKSAFRWIRPPPA-RPPPFRRPPPAQV 65

Query: 395 PSPAFTHEVDYNELQILCPQEVDSSTNYTRDDPQCAVPRGSVAVGDEAEAVRAEFRLLSG 574
           P   + H+V+Y ELQILCPQ +D  T Y  DDP C VPR +VA G+EA  +R E  LL+G
Sbjct: 66  P---YVHKVEYTELQILCPQIIDPVTKYPMDDPACNVPRATVAAGEEALTIRDENGLLNG 122

Query: 575 DLVNVTLEEVDESEPGSRRRMLSQLREELATGRRLLNTDTAPLPGRSFRLKSLRPVRQTE 754
           DL+NVTLEEVD  E  SRRR+ S +REE  TGR LL T +A LP  +FRLKSL+ + +  
Sbjct: 123 DLLNVTLEEVDTPENPSRRRLRSIIREEQRTGRVLLAT-SAELPTPAFRLKSLKSILKGS 181

Query: 755 QKEIYTGTPIDLRTVVFIMDFSDCRMP--QAPA-VTKERVTRDMLKTSASPANNLAGYYS 925
           QKEIY+GTPIDLRT+V+IMDFS C++    APA +T E+VT DML+++++PANNLA YY 
Sbjct: 182 QKEIYSGTPIDLRTIVYIMDFSSCKLAGWSAPATLTPEKVTSDMLRSASAPANNLANYYG 241

Query: 926 TCSYGKTIFNPDNFIVV 976
            CSY KT+FNP+NF+V+
Sbjct: 242 ACSYEKTLFNPNNFLVL 258

>dbj|BAB68383.1| matrix metalloprotease 2 [Chlamydomonas reinhardtii]
           gi|15718397|dbj|BAB68385.1| matrix metalloprotease 2
           [Chlamydomonas reinhardtii]
          Length = 635

 Score =  118 bits (296), Expect = 1e-25
 Identities = 89/267 (33%), Positives = 130/267 (48%), Gaps = 13/267 (4%)
 Frame = +2

Query: 215 ALAALLVAVFALLTATPQPTCAQEEFQGVGMVK-LKSAFRFVRPPP--NHRPPPFR--KP 379
           A+  +L+A+ A+   + + T       G+GM++ ++ A   VR PP    RPPP R  + 
Sbjct: 6   AVRGVLLAILAMQLLSSKATT----ITGIGMIRYMEGAQAEVRHPPPLRRRPPPTRGRQQ 61

Query: 380 PPAASPSPAFTHEVDYNELQILCPQEVDSSTNYTRDDPQCAVPRGSVAVGDEAEAVRAEF 559
            P  S            +LQ++CPQ +D  T Y  DDP C VPR  +A G+ AE +R E 
Sbjct: 62  SPPGSGGAVLDTVTTPPQLQLVCPQIIDIVTGYPMDDPSCYVPRVVLAQGEAAEQMRNEN 121

Query: 560 RLLSGDLVNVTLEEVDESEPGSRRRMLSQLREELATGRRLLNTDTAPLPGRSFRLKSLRP 739
            + SGD++NVTL   D S  G                              SF + SL+ 
Sbjct: 122 GVSSGDIMNVTL---DVSANG------------------------------SFAVTSLKT 148

Query: 740 VRQTEQKE----IYTGTPIDLRTVVFIMDFSDCR---MPQAPAVTKERVTRDMLKT-SAS 895
           V    QK     IY+GTP D R V++++DFS C+   M    A+T E   R + +  S++
Sbjct: 149 VMLGSQKGGCKCIYSGTPADDRVVMYLLDFSSCQGYGMAAPAALTPEVAWRLLSQDGSSA 208

Query: 896 PANNLAGYYSTCSYGKTIFNPDNFIVV 976
           P ++   Y  TCSYG+ + NPDN +VV
Sbjct: 209 PGSSFKAYQETCSYGRRLLNPDNVVVV 235

>dbj|BAB85218.1| matrix metalloproteinase [Volvox carteri f. nagariensis]
          Length = 625

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
 Frame = +2

Query: 554 EFRLLSGDLVNVTLEEVDESEPGSRRRMLSQLREELATGRRLLNTDTAPLPGRSFRLKSL 733
           ++ +L+GD V V  +  + S     RR+LS                  PLP     + S+
Sbjct: 91  KYNVLTGDYVRVNYK--NSSTASGSRRLLSD----------------EPLP----EIDSI 128

Query: 734 RPVRQTEQKEIYTGTPIDLRTVVFIMDFSDCRMPQAPAVTKERVTRDMLKTSASPANNLA 913
             + ++E  EIYTGT I ++++++I+  S C    AP+ T E++       +    NN+A
Sbjct: 129 DVISESEGHEIYTGTQIRVKSMIYII--STCGW--APSATVEQIKGTFFNNT----NNIA 180

Query: 914 GYYSTCSYGKTIFNP-DNFI 970
           GY+ TCSYGK  F+P +NF+
Sbjct: 181 GYHDTCSYGKVAFDPSENFV 200

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = -3

Query: 668 PWPAPRAAATACGGGCPAPTRPPPPASRSPGRR*AAGTRPARPRPHRPQPQSRAARR 498
           P P PR+   +       PT PPPP      +     T P +PRP RP P  R   R
Sbjct: 552 PPPRPRSPPRSPLPPPRPPTSPPPPPQLKASKAPRFPTPPQKPRPPRPPPPPRPPPR 608

>pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [imported] -
           Boreogadus saida gi|2078483|gb|AAC60129.1| antifreeze
           glycopeptide AFGP polyprotein precursor
          Length = 507

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 55/211 (26%), Positives = 79/211 (37%), Gaps = 3/211 (1%)
 Frame = +3

Query: 348 PTTARRPSASRRPPPPPRPPSHTRLITTSFRSCVLRRLTRQRTTHATTRNAPCRAALWLW 527
           P TA   + +  P  P  P +     T +  +   R  T      A T   P  AA    
Sbjct: 263 PATAATLATAATPATPATPATAATDATAATAATPARAATPATPATAATPATPATAATAAT 322

Query: 528 AMRPRPCG-PSSGCLAATW*T*RWRRWTSRSRAAAAACCRSCARSWPRAGAC*TPTPHRC 704
           A        P+    AAT  T       + +  AA A   + A +  RA    TP     
Sbjct: 323 AATAATAATPARAARAATPATAATPATAATAATAATAATAATAATPARAARAATPATAAT 382

Query: 705 RAGASGSRACVRSGRPSR--RRSTPAPPSTSAPWCSSWTSATAACRRHRPSPRSVSLATC 878
            A A+ +     +  P+R  R +TPA P+T A   +  T+ATAA      +  + + A  
Sbjct: 383 AATAATAATAATAATPARAARAATPATPATPATPATPATAATAATAATAATAATAATAAT 442

Query: 879 SRRRPRPPTTWPATTAPAPTARPFSTPTTSS 971
           +   P P     A T PA  A P + PT  +
Sbjct: 443 AATAPTPARAARAAT-PATGATPATAPTAGT 472

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 57/209 (27%), Positives = 79/209 (37%), Gaps = 2/209 (0%)
 Frame = +3

Query: 351 TTARRPSASRRPPPPPRPPSHTRLITTSFRSCVLRRLTRQRTTHATTRNAPCRAALWLWA 530
           TTA   + +     P R     R  T +  +      T      A T   P RAA    A
Sbjct: 81  TTAATAATAATAATPARA---ARAATPATAATPATAATAATAATAATAETPARAATPATA 137

Query: 531 MRPRPCG-PSSGCLAATW*T*RWRRWTSRSRAAAAACCRSCARSWPRAGAC*TPTPHRCR 707
             P     P++   AAT              AA +A   + AR+   A A    TP    
Sbjct: 138 ATPATAATPATAATAAT--------------AATSATAATAARAATPATAATPATP---- 179

Query: 708 AGASGSRACVRSGRPSRRRSTPAPPSTSAPWCSSWTSATAACRRHRPSPRSVSLATCSRR 887
             A+ +RA         R +TPA  +T+A   ++ T+ATAA      +P   + A     
Sbjct: 180 --ATAARAA--------RAATPATAATAATAATAATAATAATAATAATPARAARAATPAT 229

Query: 888 RPRPPT-TWPATTAPAPTARPFSTPTTSS 971
            P P T   PAT A A TA   +TP  ++
Sbjct: 230 APTPATAATPATAATAATAPTAATPARAA 258

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 54/208 (25%), Positives = 78/208 (36%), Gaps = 2/208 (0%)
 Frame = +3

Query: 354 TARRPSASRRPPPPPRPPSHTRLITTSFRSCVLRRLTRQRTTHATTRNAPCRAALWLWAM 533
           TA  P+ + R   P   P+     T +  +      T      A     P  AA    A 
Sbjct: 214 TAATPARAARAATPATAPTPATAATPATAATAATAPTAATPARAARAATPATAATL--AT 271

Query: 534 RPRPCGPSSGCLAATW*T*RWRRWTSRSRAAAAACCRSCARSWPRAGAC*TPTPHRCRAG 713
              P  P++   AAT            + A AA   R+   + P   A  TP      A 
Sbjct: 272 AATPATPATPATAAT----------DATAATAATPARAATPATPATAA--TPATPATAAT 319

Query: 714 ASGSRACVRSGRPSR--RRSTPAPPSTSAPWCSSWTSATAACRRHRPSPRSVSLATCSRR 887
           A+ +     +  P+R  R +TPA  +T A   ++ T+ATAA         + + A    R
Sbjct: 320 AATAATAATAATPARAARAATPATAATPATAATAATAATAA---------TAATAATPAR 370

Query: 888 RPRPPTTWPATTAPAPTARPFSTPTTSS 971
             R  T  PAT A A TA   +T  T++
Sbjct: 371 AARAAT--PATAATAATAATAATAATAA 396

 Score = 36.2 bits (82), Expect = 0.87
 Identities = 38/141 (26%), Positives = 59/141 (40%), Gaps = 1/141 (0%)
 Frame = +3

Query: 552 PSSGCLAATW*T*RWRRWTSRSRAAAAACCRSCARSWPRAGAC*TPTPHRCRAGASGSRA 731
           P++   AAT  T       +    AA A   + A +        TP      A  + + A
Sbjct: 28  PAAAARAATPATAATPATAATPATAATAATEATAATAATPATAATPATAATAATTAATAA 87

Query: 732 CVRSGRPSRRRSTPAPPSTSAPWCSSWTSATAACRRHRPSP-RSVSLATCSRRRPRPPTT 908
              +     R +  A P+T+A   ++ T+ATAA      +P R+ + AT +   P    T
Sbjct: 88  TAATAATPARAARAATPATAATPATAATAATAATAATAETPARAATPATAA--TPATAAT 145

Query: 909 WPATTAPAPTARPFSTPTTSS 971
            PAT A A TA   +T  T++
Sbjct: 146 -PATAATAATAATSATAATAA 165



EST assemble image


clone accession position
1 CL61c11_r AV396327 1 522
2 LCL062e12_r AV629645 64 391
3 LCL008d11_r AV626399 67 443
4 LCL014d05_r AV626724 86 346
5 LCL048f12_r AV628901 86 243
6 LCL026c07_r AV627406 90 531
7 LCL040b07_r AV628327 91 412
8 LCL013a12_r AV626654 91 357
9 HCL029e08_r AV641194 96 452
10 MXL032c09_r BP094913 98 491
11 CL12g01_r AV393832 104 537
12 LCL048a11_r AV628855 108 364
13 MXL080c08_r BP097722 189 553
14 LCL050a11_r AV628992 353 784
15 HCL091g06_r AV644652 362 905
16 LCL084g10_r AV630823 399 863
17 LCL029f06_r AV627623 545 1066




Chlamydomonas reinhardtii
Kazusa DNA Research Institute