Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000238A_C01 KCC000238A_c01
(939 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62519.1| 50S ribosomal protein L3 [Arabidopsis thaliana] 161 1e-62
ref|NP_181831.1| ribosomal protein L3p family [Arabidopsis thali... 161 1e-62
gb|AAP79150.1| ribosomal protein rpL3 [Bigelowiella natans] 140 3e-58
ref|NP_440669.1| 50S ribosomal protein L3 [Synechocystis sp. PCC... 119 5e-49
ref|NP_680872.1| 50S ribosomal protein L3 [Thermosynechococcus e... 115 7e-49
>gb|AAM62519.1| 50S ribosomal protein L3 [Arabidopsis thaliana]
Length = 271
Score = 161 bits (407), Expect(2) = 1e-62
Identities = 78/146 (53%), Positives = 102/146 (69%)
Frame = +2
Query: 155 SRARTVLVEARQFRKAMGVLGTKAGMMSYFTEDGLCVPATVIALEEGNVVTQVKTQDTDG 334
S +T V + +GV+G+K GMMS+F EDG VP TV+ EGN+VTQ+KT TDG
Sbjct: 40 SSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDG 99
Query: 335 YNAVQIGYKATAEKRVTKPELGHLKKAGVPPMRHLVEFKLKDRAAVEAYQPGQALDVAAL 514
Y+AVQIGY+ +K++TKPE GHL+KAG PMRHL EF+L + +E ++P Q L +
Sbjct: 100 YDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTN---IEGFEPNQKLVFDEI 156
Query: 515 LKEGEPVDIAGITVGKGFQGTIKRWH 592
KEG+ VD+AG T+GKGFQG IKR H
Sbjct: 157 FKEGDLVDVAGTTIGKGFQGGIKRHH 182
Score = 102 bits (254), Expect(2) = 1e-62
Identities = 46/83 (55%), Positives = 63/83 (75%)
Frame = +3
Query: 600 RGAMSHGSKSHREHGSIGSATTPSRVFPGLKMAGQMGNVRMTVKNQSLLKVDTERHALVV 779
RG M+HGSKSHR GSIG+ TTP RV+ G KM G+MG R ++ ++KVD E + +++
Sbjct: 185 RGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMI 244
Query: 780 KGSVPGKVGNVVEITPAKLVGVN 848
KG++PGK GN++ ITPAK+VGVN
Sbjct: 245 KGALPGKPGNLLRITPAKIVGVN 267
>ref|NP_181831.1| ribosomal protein L3p family [Arabidopsis thaliana]
gi|25294944|pir||B84861 50S ribosomal protein L3
[imported] - Arabidopsis thaliana
gi|4531443|gb|AAD22128.1| 50S ribosomal protein L3
[Arabidopsis thaliana]
Length = 271
Score = 161 bits (407), Expect(2) = 1e-62
Identities = 78/146 (53%), Positives = 102/146 (69%)
Frame = +2
Query: 155 SRARTVLVEARQFRKAMGVLGTKAGMMSYFTEDGLCVPATVIALEEGNVVTQVKTQDTDG 334
S +T V + +GV+G+K GMMS+F EDG VP TV+ EGN+VTQ+KT TDG
Sbjct: 40 SSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDG 99
Query: 335 YNAVQIGYKATAEKRVTKPELGHLKKAGVPPMRHLVEFKLKDRAAVEAYQPGQALDVAAL 514
Y+AVQIGY+ +K++TKPE GHL+KAG PMRHL EF+L + +E ++P Q L +
Sbjct: 100 YDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTN---IEGFEPNQKLVFDEI 156
Query: 515 LKEGEPVDIAGITVGKGFQGTIKRWH 592
KEG+ VD+AG T+GKGFQG IKR H
Sbjct: 157 FKEGDLVDVAGTTIGKGFQGGIKRHH 182
Score = 102 bits (254), Expect(2) = 1e-62
Identities = 46/83 (55%), Positives = 63/83 (75%)
Frame = +3
Query: 600 RGAMSHGSKSHREHGSIGSATTPSRVFPGLKMAGQMGNVRMTVKNQSLLKVDTERHALVV 779
RG M+HGSKSHR GSIG+ TTP RV+ G KM G+MG R ++ ++KVD E + +++
Sbjct: 185 RGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMI 244
Query: 780 KGSVPGKVGNVVEITPAKLVGVN 848
KG++PGK GN++ ITPAK+VGVN
Sbjct: 245 KGALPGKPGNLLRITPAKIVGVN 267
>gb|AAP79150.1| ribosomal protein rpL3 [Bigelowiella natans]
Length = 302
Score = 140 bits (352), Expect(2) = 3e-58
Identities = 69/130 (53%), Positives = 94/130 (72%), Gaps = 1/130 (0%)
Frame = +2
Query: 203 MGVLGTKAGMMSYFTEDGLCVPATVIALEEGNVVTQVKTQDTDGYNAVQIGYKATAEKRV 382
MG++GTKAGM +Y+ ++G+ P TVIALE GNVVTQVKT++TDGY+AVQ+ YK T ++ +
Sbjct: 89 MGLMGTKAGMTTYYDDEGIAHPVTVIALEAGNVVTQVKTKETDGYDAVQLAYKETRDRTI 148
Query: 383 TKPELGHLKKAG-VPPMRHLVEFKLKDRAAVEAYQPGQALDVAALLKEGEPVDIAGITVG 559
PE HL+K G V M+HL EFK+ D V + PGQ L L + G+ VD++G + G
Sbjct: 149 PWPERQHLRKHGNVKAMKHLKEFKIAD---VSEFTPGQQLKAEELFEVGDLVDVSGTSSG 205
Query: 560 KGFQGTIKRW 589
KGFQG+I+RW
Sbjct: 206 KGFQGSIRRW 215
Score = 108 bits (270), Expect(2) = 3e-58
Identities = 51/81 (62%), Positives = 63/81 (76%)
Frame = +3
Query: 600 RGAMSHGSKSHREHGSIGSATTPSRVFPGLKMAGQMGNVRMTVKNQSLLKVDTERHALVV 779
RG MSHGSKSHR+HGSIG + TPSRV+ GLKMAG+MGN R TVK ++ V+ E +VV
Sbjct: 219 RGPMSHGSKSHRQHGSIGCSATPSRVYKGLKMAGRMGNERKTVKKLPVMMVNDEEKYIVV 278
Query: 780 KGSVPGKVGNVVEITPAKLVG 842
+GSVPGK G +VE+ P K+VG
Sbjct: 279 RGSVPGKKGTIVELRPTKIVG 299
>ref|NP_440669.1| 50S ribosomal protein L3 [Synechocystis sp. PCC 6803]
gi|2500229|sp|P73320|RL3_SYNY3 50S ribosomal protein L3
gi|7440604|pir||S77502 ribosomal protein L3 -
Synechocystis sp. (strain PCC 6803)
gi|1652427|dbj|BAA17349.1| 50S ribosomal protein L3
[Synechocystis sp. PCC 6803]
Length = 213
Score = 119 bits (299), Expect(2) = 5e-49
Identities = 68/137 (49%), Positives = 92/137 (66%), Gaps = 2/137 (1%)
Frame = +2
Query: 200 AMGVLGTKAGMMSYFT-EDGLCVPATVIALEEGNV-VTQVKTQDTDGYNAVQIGYKATAE 373
++G+LGTK GM F E G+ +P TV+ + G VTQVKTQDTDGYNA+Q+G+ E
Sbjct: 2 SIGILGTKLGMTQIFDQESGISIPVTVV--QAGPCPVTQVKTQDTDGYNAIQVGFLPVKE 59
Query: 374 KRVTKPELGHLKKAGVPPMRHLVEFKLKDRAAVEAYQPGQALDVAALLKEGEPVDIAGIT 553
K ++KPELGHLKK+ PMRHL E++L D + QPG A+ A + + G+ VD+AG +
Sbjct: 60 KALSKPELGHLKKSNTDPMRHLKEYRLTDAPNL---QPGDAV-TADIFQAGDLVDVAGQS 115
Query: 554 VGKGFQGTIKRWHHNAR 604
+G+GF G KR HN R
Sbjct: 116 MGRGFAGYQKR--HNFR 130
Score = 98.2 bits (243), Expect(2) = 5e-49
Identities = 44/81 (54%), Positives = 63/81 (77%)
Frame = +3
Query: 600 RGAMSHGSKSHREHGSIGSATTPSRVFPGLKMAGQMGNVRMTVKNQSLLKVDTERHALVV 779
RG M+HGSK+HR GS G+ TTP RV+PG +MAGQ G ++TV+ ++++VD ER+ L++
Sbjct: 131 RGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQYGASQVTVRRLTVVRVDAERNLLII 190
Query: 780 KGSVPGKVGNVVEITPAKLVG 842
KG++PGK G ++ ITPAK VG
Sbjct: 191 KGALPGKPGTLLNITPAKTVG 211
>ref|NP_680872.1| 50S ribosomal protein L3 [Thermosynechococcus elongatus BP-1]
gi|22293802|dbj|BAC07634.1| 50S ribosomal protein L3
[Thermosynechococcus elongatus BP-1]
Length = 212
Score = 115 bits (287), Expect(2) = 7e-49
Identities = 64/133 (48%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Frame = +2
Query: 203 MGVLGTKAGMMSYFTEDGLCVPATVIALEEGNV-VTQVKTQDTDGYNAVQIGYKATAEKR 379
+G+LGTK GM F E G VP TV+ + G +TQ+KT TDGY A+Q+ Y EK
Sbjct: 3 VGILGTKLGMTQIFDEAGRSVPITVV--QAGPCPITQIKTPQTDGYTAIQVAYGEVREKN 60
Query: 380 VTKPELGHLKKAGVPPMRHLVEFKLKDRAAVEAYQPGQALDVAALLKEGEPVDIAGITVG 559
+++PE GHL K+ PPMRHL EF+L+D V AYQ GQA+ V + G+ VD+ G ++G
Sbjct: 61 LSRPERGHLNKSQTPPMRHLREFRLED---VSAYQLGQAITV-DIFSPGQLVDVRGTSIG 116
Query: 560 KGFQGTIKRWHHN 598
+GF G KR HN
Sbjct: 117 RGFAGYQKR--HN 127
Score = 102 bits (254), Expect(2) = 7e-49
Identities = 45/81 (55%), Positives = 64/81 (78%)
Frame = +3
Query: 600 RGAMSHGSKSHREHGSIGSATTPSRVFPGLKMAGQMGNVRMTVKNQSLLKVDTERHALVV 779
RG M+HGSK+HR GS G+ TTP RVFPG +MAG+MGN +T++ +++VD ER+ +++
Sbjct: 130 RGPMAHGSKNHRLPGSTGAGTTPGRVFPGKRMAGRMGNTAVTIRKLQVMRVDPERNLILI 189
Query: 780 KGSVPGKVGNVVEITPAKLVG 842
KG++PGK G +V ITPAK+VG
Sbjct: 190 KGALPGKPGALVSITPAKVVG 210
