KCC000235A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000235A_C02 KCC000235A_c02
tgccacatttCATACAGGTTTTACTGTTAATACGCGTTGAAGTACTGCGAAAGTTAGCAC
ACAGAGGTTTGCTGGAAACGCGCCCAAAAGCAGACAGAAAATGCGCACGCAAAACTCTGT
GATGGAGTGCCCCCGCTCCATGGTTGGGAGAGTCATCGGTGAGGCTCGCCGACGCGTAGA
GCCGACGGGACAGGGCAAGCCCGAGCTGTACTGCAAACTTTCGCCTGCTTCGTCGTTGGG
CGTATCCCACAGGCAAGTCAGGCGAGACGGTGAAAGCTCTTCAGACCTATACTGGCGCCA
CGATTCAGATTGATCAGAGCGTGGACCCGACGCGAGTGTCAATTTCAGGCGCTGCGTACT
CGGTAAACCTTGCCGTCAGCATTATTACGGATATCATCCGGGGGAGCTTCAAGGGCTTCG
CTCTGCTTCGCCAAGCGACGCGACCAGCCAATGGACGCAACGGGTATCCCGCGTTCACAG
AGCCCCGGCCTGTTTACGCCCCCGGGTATGGCCTCATTCCGGCCTCTCAGCTGTACGACG
ACCGCACCGCGCCGCCGCCCATGGGCACGCCATACGGCCTTCGGCCTGCCGACTCCCTGC
AGCACGTGTACCCGCTCATGACAACCAGCCTGCCCACACAGAGCGTGTTGGTAGGTGTCG
TGCAGCTTGGTTGGGACTCGGAATACAAGTAAAGGCGAAGCGTACCGTGCCGTCGAGTGC
TGCTGGAGGGTTGCCGGTTCGTACATGCTGCTGGTCCCAGCGAAATGCACTACCGGTACG
ACCCATCAGCGGCCGTGCATGGCCGAGGCTGAGGTGTCCAATGCTGCTGTCGTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000235A_C02 KCC000235A_c02
         (835 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM52768.1| SD07343p [Drosophila melanogaster]                      41  0.021
gb|AAL78679.1|AF475087_1 transcriptional corepressor Atro [Droso...    41  0.021
ref|NP_523973.2| Grunge CG6964-PB [Drosophila melanogaster] gi|2...    40  0.062
ref|NP_659574.1| Grunge CG6964-PA [Drosophila melanogaster] gi|2...    40  0.062
gb|AAF34752.1|AF217844_1 GRUNGE [Drosophila melanogaster]              40  0.062

>gb|AAM52768.1| SD07343p [Drosophila melanogaster]
          Length = 1153

 Score = 41.2 bits (95), Expect = 0.021
 Identities = 28/95 (29%), Positives = 37/95 (38%)
 Frame = +2

Query: 362 GKPCRQHYYGYHPGELQGLRSASPSDATSQWTQRVSRVHRAPACLRPRVWPHSGLSAVRR 541
           G P  QH  G HPG      SA+ S   S      +    AP+ + P + PH+ L  + R
Sbjct: 199 GPPSLQH--GLHPGHQHSQLSAASSIPPSSIGIPPTLSTMAPSHMHPHLHPHAHLQGLHR 256

Query: 542 PHRAAAHGHAIRPSACRLPAARVPAHDNQPAHTER 646
           PH      H   P    L       H   P+HT +
Sbjct: 257 PHDLPPSMHPHAPMPLSLQGHPQHGHGLPPSHTSQ 291

>gb|AAL78679.1|AF475087_1 transcriptional corepressor Atro [Drosophila melanogaster]
          Length = 1985

 Score = 41.2 bits (95), Expect = 0.021
 Identities = 28/95 (29%), Positives = 37/95 (38%)
 Frame = +2

Query: 362  GKPCRQHYYGYHPGELQGLRSASPSDATSQWTQRVSRVHRAPACLRPRVWPHSGLSAVRR 541
            G P  QH  G HPG      SA+ S   S      +    AP+ + P + PH+ L  + R
Sbjct: 1031 GPPSLQH--GLHPGHQHSQLSAASSIPPSSIGIPPTLSTMAPSHMHPHLHPHAHLQGLHR 1088

Query: 542  PHRAAAHGHAIRPSACRLPAARVPAHDNQPAHTER 646
            PH      H   P    L       H   P+HT +
Sbjct: 1089 PHDLPPSMHPHAPMPLSLQGHPQHGHGLPPSHTSQ 1123

>ref|NP_523973.2| Grunge CG6964-PB [Drosophila melanogaster] gi|23093911|gb|AAF50413.2|
            CG6964-PB [Drosophila melanogaster]
          Length = 1985

 Score = 39.7 bits (91), Expect = 0.062
 Identities = 27/95 (28%), Positives = 36/95 (37%)
 Frame = +2

Query: 362  GKPCRQHYYGYHPGELQGLRSASPSDATSQWTQRVSRVHRAPACLRPRVWPHSGLSAVRR 541
            G P  QH  G HPG      S + S   S      +    AP+ + P + PH+ L  + R
Sbjct: 1031 GPPSLQH--GLHPGHQHSQLSVASSIPPSSIGIPPTLSTMAPSHMHPHLHPHAHLQGLHR 1088

Query: 542  PHRAAAHGHAIRPSACRLPAARVPAHDNQPAHTER 646
            PH      H   P    L       H   P+HT +
Sbjct: 1089 PHDLPPSMHPHAPMPLSLQGHPQHGHGLPPSHTSQ 1123

>ref|NP_659574.1| Grunge CG6964-PA [Drosophila melanogaster] gi|23093912|gb|AAN12008.1|
            CG6964-PA [Drosophila melanogaster]
          Length = 1966

 Score = 39.7 bits (91), Expect = 0.062
 Identities = 27/95 (28%), Positives = 36/95 (37%)
 Frame = +2

Query: 362  GKPCRQHYYGYHPGELQGLRSASPSDATSQWTQRVSRVHRAPACLRPRVWPHSGLSAVRR 541
            G P  QH  G HPG      S + S   S      +    AP+ + P + PH+ L  + R
Sbjct: 1031 GPPSLQH--GLHPGHQHSQLSVASSIPPSSIGIPPTLSTMAPSHMHPHLHPHAHLQGLHR 1088

Query: 542  PHRAAAHGHAIRPSACRLPAARVPAHDNQPAHTER 646
            PH      H   P    L       H   P+HT +
Sbjct: 1089 PHDLPPSMHPHAPMPLSLQGHPQHGHGLPPSHTSQ 1123

>gb|AAF34752.1|AF217844_1 GRUNGE [Drosophila melanogaster]
          Length = 1966

 Score = 39.7 bits (91), Expect = 0.062
 Identities = 27/95 (28%), Positives = 36/95 (37%)
 Frame = +2

Query: 362  GKPCRQHYYGYHPGELQGLRSASPSDATSQWTQRVSRVHRAPACLRPRVWPHSGLSAVRR 541
            G P  QH  G HPG      S + S   S      +    AP+ + P + PH+ L  + R
Sbjct: 1031 GPPSLQH--GLHPGHQHSQLSVASSIPPSSIGIPPTLSTMAPSHMHPHLHPHAHLQGLHR 1088

Query: 542  PHRAAAHGHAIRPSACRLPAARVPAHDNQPAHTER 646
            PH      H   P    L       H   P+HT +
Sbjct: 1089 PHDLPPSMHPHAPMPLSLQGHPQHGHGLPPSHTSQ 1123



EST assemble image


clone accession position
1 LCL041a05_r AV628387 1 294
2 LCL025c07_r AV627341 11 400
3 LCL012c01_r AV626607 23 508
4 LCL094g10_r AV631485 26 293
5 HCL041g08_r AV641879 49 412
6 LCL031e11_r AV627756 117 408
7 LCL095g12_r AV631535 309 835
8 LCL088b08_r AV631053 311 773




Chlamydomonas reinhardtii
Kazusa DNA Research Institute