Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000233A_C14 KCC000233A_c14
(1018 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94624|RS6_MANSE 40S ribosomal protein S6 gi|1498733|gb|AAB06... 98 2e-35
sp|Q95V32|RS6_SPOFR 40S ribosomal protein S6 gi|16566731|gb|AAL2... 99 4e-35
pir||S26078 ribosomal protein S6, cytosolic - common tobacco (fr... 86 2e-34
sp|P29345|RS6_TOBAC 40S RIBOSOMAL PROTEIN S6 86 2e-34
emb|CAA48187.1| ribosomal protein S6 [Nicotiana tabacum] 86 2e-34
>sp|Q94624|RS6_MANSE 40S ribosomal protein S6 gi|1498733|gb|AAB06459.1| ribosomal
protein S6
Length = 253
Score = 97.8 bits (242), Expect(2) = 2e-35
Identities = 75/168 (44%), Positives = 92/168 (54%), Gaps = 1/168 (0%)
Frame = +3
Query: 30 MKLNIAYPATWLPKEAGVWTMSAKLRAFYDRRCGR*VSMAEVLG-RGCSMVLRSEASLVC 206
MKLN+++PAT K V KLR FY++R G V A++LG VLR
Sbjct: 1 MKLNVSFPATGCQKLFEV-VDEHKLRIFYEKRMGAEVE-ADLLGDEWKGYVLRVAGG--- 55
Query: 207 QDKQWLRHMKQWCPDQCPRAVC**PPADQGFRWLRACRKG*AAAGSRFAGCIVSPDLAVL 386
DKQ + + R + +G R R G S GCIV +L+VL
Sbjct: 56 NDKQGFPMKQGVLTNSRVRLLM-----SKGHSCYRPRRDGERKRKS-VRGCIVDANLSVL 109
Query: 387 NLVIVKKGEQELAGLTDEEKPRIRGPKRASKIRKMFNLGKEDDVRKYV 530
LVIV+KGEQE+ GLTD PR GPKRASKIRK+FNL KEDDVR+YV
Sbjct: 110 ALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV 157
Score = 74.7 bits (182), Expect(2) = 2e-35
Identities = 42/101 (41%), Positives = 57/101 (55%)
Frame = +1
Query: 505 RRTTCASTLPSTRASGTDKNGKKHRKCPKIQRLVTPAALQRKRARKSLKKRQQEKNKTDA 684
RR + LP+ +N K K PKIQRLVTP LQR+R R +LKK++ K K+
Sbjct: 154 RRYVVKALLPAKEGK---ENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAE 210
Query: 685 AEYHKLLMQRLKEQRERRSESLAKKRAMRVASQASKEA*AP 807
A+Y KLL QR KE + RR E + ++R+ + S AP
Sbjct: 211 ADYAKLLAQRKKESKVRRQEEIKRRRSASMRDSKSSNQSAP 251
>sp|Q95V32|RS6_SPOFR 40S ribosomal protein S6 gi|16566731|gb|AAL26582.1|AF429980_1
ribosomal protein S6 [Spodoptera frugiperda]
Length = 253
Score = 98.6 bits (244), Expect(2) = 4e-35
Identities = 72/167 (43%), Positives = 89/167 (53%)
Frame = +3
Query: 30 MKLNIAYPATWLPKEAGVWTMSAKLRAFYDRRCGR*VSMAEVLGRGCSMVLRSEASLVCQ 209
MKLN+++PAT K V KLR FY++R G V ++ VLR
Sbjct: 1 MKLNVSFPATGCQKLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRIAGG---N 56
Query: 210 DKQWLRHMKQWCPDQCPRAVC**PPADQGFRWLRACRKG*AAAGSRFAGCIVSPDLAVLN 389
DKQ + + R + +G R R G S GCIV +L+VL
Sbjct: 57 DKQGFPMKQGVLTNSRVRLLM-----SKGHSCYRPRRDGERKRKS-VRGCIVDANLSVLA 110
Query: 390 LVIVKKGEQELAGLTDEEKPRIRGPKRASKIRKMFNLGKEDDVRKYV 530
LVIV+KGEQE+ GLTD PR GPKRASKIRK+FNL KEDDVR+YV
Sbjct: 111 LVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV 157
Score = 73.2 bits (178), Expect(2) = 4e-35
Identities = 42/101 (41%), Positives = 55/101 (53%)
Frame = +1
Query: 505 RRTTCASTLPSTRASGTDKNGKKHRKCPKIQRLVTPAALQRKRARKSLKKRQQEKNKTDA 684
RR LP+ +N K K PKIQRLVTP LQR+R R +LKK++ K K
Sbjct: 154 RRYVVKRLLPAKEGK---ENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSE 210
Query: 685 AEYHKLLMQRLKEQRERRSESLAKKRAMRVASQASKEA*AP 807
+Y KLL QR KE + RR E L ++R+ + S + AP
Sbjct: 211 NDYAKLLAQRKKESKVRRQEELKRRRSASMRDSKSSDKSAP 251
>pir||S26078 ribosomal protein S6, cytosolic - common tobacco (fragment)
Length = 211
Score = 85.5 bits (210), Expect(2) = 2e-34
Identities = 48/74 (64%), Positives = 57/74 (76%), Gaps = 1/74 (1%)
Frame = +1
Query: 571 KHRKCPKIQRLVTPAALQRKRARKSLKKRQQEKNKTDAAEYHKLLMQRLKEQRERRSESL 750
K K PKIQRLVTP LQRKRAR + KK++ K K++AAEY KLL RLKEQRE+RSESL
Sbjct: 135 KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESL 194
Query: 751 AKKRA-MRVASQAS 789
AKKR+ + AS+ S
Sbjct: 195 AKKRSRLSAASKPS 208
Score = 84.0 bits (206), Expect(2) = 2e-34
Identities = 42/77 (54%), Positives = 55/77 (70%)
Frame = +3
Query: 354 GCIVSPDLAVLNLVIVKKGEQELAGLTDEEKPRIRGPKRASKIRKMFNLGKEDDVRKYVT 533
GCIVSPDL+VLNLVIVKKGE +L GLTD EKPR+RGP+ + ++ KEDDVRKYV
Sbjct: 68 GCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVN 125
Query: 534 IYSRERDRQERQEAPQV 584
+ + + +AP++
Sbjct: 126 TTAEFTTKWKGSKAPKI 142
>sp|P29345|RS6_TOBAC 40S RIBOSOMAL PROTEIN S6
Length = 199
Score = 85.5 bits (210), Expect(2) = 2e-34
Identities = 48/74 (64%), Positives = 57/74 (76%), Gaps = 1/74 (1%)
Frame = +1
Query: 571 KHRKCPKIQRLVTPAALQRKRARKSLKKRQQEKNKTDAAEYHKLLMQRLKEQRERRSESL 750
K K PKIQRLVTP LQRKRAR + KK++ K K++AAEY KLL RLKEQRE+RSESL
Sbjct: 123 KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESL 182
Query: 751 AKKRA-MRVASQAS 789
AKKR+ + AS+ S
Sbjct: 183 AKKRSRLSAASKPS 196
Score = 84.0 bits (206), Expect(2) = 2e-34
Identities = 42/77 (54%), Positives = 55/77 (70%)
Frame = +3
Query: 354 GCIVSPDLAVLNLVIVKKGEQELAGLTDEEKPRIRGPKRASKIRKMFNLGKEDDVRKYVT 533
GCIVSPDL+VLNLVIVKKGE +L GLTD EKPR+RGP+ + ++ KEDDVRKYV
Sbjct: 56 GCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVN 113
Query: 534 IYSRERDRQERQEAPQV 584
+ + + +AP++
Sbjct: 114 TTAEFTTKWKGSKAPKI 130
>emb|CAA48187.1| ribosomal protein S6 [Nicotiana tabacum]
Length = 192
Score = 85.5 bits (210), Expect(2) = 2e-34
Identities = 48/74 (64%), Positives = 57/74 (76%), Gaps = 1/74 (1%)
Frame = +1
Query: 571 KHRKCPKIQRLVTPAALQRKRARKSLKKRQQEKNKTDAAEYHKLLMQRLKEQRERRSESL 750
K K PKIQRLVTP LQRKRAR + KK++ K K++AAEY KLL RLKEQRE+RSESL
Sbjct: 116 KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESL 175
Query: 751 AKKRA-MRVASQAS 789
AKKR+ + AS+ S
Sbjct: 176 AKKRSRLSAASKPS 189
Score = 84.0 bits (206), Expect(2) = 2e-34
Identities = 42/77 (54%), Positives = 55/77 (70%)
Frame = +3
Query: 354 GCIVSPDLAVLNLVIVKKGEQELAGLTDEEKPRIRGPKRASKIRKMFNLGKEDDVRKYVT 533
GCIVSPDL+VLNLVIVKKGE +L GLTD EKPR+RGP+ + ++ KEDDVRKYV
Sbjct: 49 GCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVN 106
Query: 534 IYSRERDRQERQEAPQV 584
+ + + +AP++
Sbjct: 107 TTAEFTTKWKGSKAPKI 123
