KCC000232A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000232A_C01 KCC000232A_c01
cgctagcgagcttagctggtttcggctggtagcccattcttctacataccagtcaagaat
ggcttcagacttttcgactgGACTACACGGCGGGCACCATGAAACATTGGAGCAATACAA
TAAGGTGCTCGAGGAGCTGGCGGCTGACGCTGTCATGGACCCATTCAGAGTGGAATACGA
GAAACTACATCGCGCCCTCAGGAAAACATACGAGAGCCAGGCTCGACTAGCAAAAAAATG
CCAGGAACTCAACTCAGATATCAGTTTGAACGCCAGCAAGGTGCAGAGCGCATTAAAGCT
GAACGAGGAGGACCGGGAGACGGCGGTGGCGCTGAAGCGGGAGATCAACAAGGCCTGGAA
GATGGTGGACGATAGCACGGTGAAGGAGACGAAGGCGAAGGAGACGGCGCAGCAGCTCAA
GGTGGAAATTGCCAACCTAAGCCGCCTGGTGGAGGAGGGCGCGGGCCTGGCGATCGGCGA
GGAGACTGCTCTGAACGAGCTGCTAAAGCAGAAGGAGGAGCTGGCGCGCGAGCGGGACGC
GCAGGTAGAGCAGCTGATGAAGTACCGGTCGGACCTGATGGAGACGCAGGAGAAGCTGCG
CGCAGCTGATGCGGAGAAGCTTCAGCTGGACGCGGACATCCAACACCTGCGCGGCACCAT
CAACGACAAGAAGGCGGAGGCGGAGCGCGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000232A_C01 KCC000232A_c01
         (691 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_219988.2| similar to CG5882-PA [Rattus norvegicus]             178  8e-44
dbj|BAC04102.1| unnamed protein product [Homo sapiens]                169  3e-41
ref|XP_089747.2| similar to CG5882-PA [Homo sapiens]                  169  3e-41
gb|EAA43024.1| GLP_170_182668_185370 [Giardia lamblia ATCC 50803]     126  3e-28
ref|XP_340400.1| hypothetical protein Tb927.2.3020 [Trypanosoma ...    96  4e-19

>ref|XP_219988.2| similar to CG5882-PA [Rattus norvegicus]
          Length = 1094

 Score =  178 bits (451), Expect = 8e-44
 Identities = 88/197 (44%), Positives = 139/197 (69%)
 Frame = +2

Query: 101 ETLEQYNKVLEELAADAVMDPFRVEYEKLHRALRKTYESQARLAKKCQELNSDISLNASK 280
           E  + + +VL EL+ D  ++ FRVEYEKLH  ++K+YE++ RL  KC+ELN++I +N++K
Sbjct: 172 EIEKDFQEVLSELSGDKSLEKFRVEYEKLHTIMKKSYENEKRLMAKCRELNAEIVVNSAK 231

Query: 281 VQSALKLNEEDRETAVALKREINKAWKMVDDSTVKETKAKETAQQLKVEIANLSRLVEEG 460
           V +ALKL+++D+ T  +LK+EI KAWKMVD +  KE KAKET   LK EI NL++L+E+G
Sbjct: 232 VATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLIEQG 291

Query: 461 AGLAIGEETALNELLKQKEELARERDAQVEQLMKYRSDLMETQEKLRAADAEKLQLDADI 640
           +GL++ +++ + +LLK KEE+ RERD  + +++K R +L +  EK +AA+  K + +  I
Sbjct: 292 SGLSMDQDSNIRDLLKFKEEVTRERDQLLTEVVKLRENLAQITEKQQAAERAKEEAEHAI 351

Query: 641 QHLRGTINDKKAEAERE 691
              +  I  ++ EA RE
Sbjct: 352 SQFQQEIQHRQNEASRE 368

 Score = 40.4 bits (93), Expect = 0.026
 Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
 Frame = +2

Query: 122 KVLEELAADAVMDPFRVEYEKLHRALRKTYESQARLAKKCQELNSDISLNASKV-QSALK 298
           K+L E AA  V + F++   KL +   +   +  +L+++ Q+   ++     ++ Q  L 
Sbjct: 418 KILNERAAKEV-EQFQLRNMKLQQENEQHTLTCEQLSQENQQKALELKAKEDEIHQMRLD 476

Query: 299 LNEEDRETAVALKREINKAWKMVDDSTVKETKAKETAQQLKVEIANLSRLVEEGAGLAIG 478
           L + ++     ++ +I+K  +++DD  ++  + KET   LK +I  L R VE     A  
Sbjct: 477 LGKLNK-----IREQIHKKLRLIDDQKIEVEQQKET---LKNQILGLEREVESSKKQAEL 528

Query: 479 EETALNELLKQKEELARERD 538
           ++ A+ ELL++++ L +  D
Sbjct: 529 DKKAMEELLRERDILNKVLD 548

>dbj|BAC04102.1| unnamed protein product [Homo sapiens]
          Length = 550

 Score =  169 bits (429), Expect = 3e-41
 Identities = 82/197 (41%), Positives = 134/197 (67%)
 Frame = +2

Query: 101 ETLEQYNKVLEELAADAVMDPFRVEYEKLHRALRKTYESQARLAKKCQELNSDISLNASK 280
           E    +  VL EL+ D  ++ FR+EYE+LH  ++K+Y+++ RL  KC+ELN++I +N++K
Sbjct: 18  EMERDFQGVLHELSGDKSLEKFRIEYERLHAVMKKSYDNEKRLMAKCRELNAEIVVNSAK 77

Query: 281 VQSALKLNEEDRETAVALKREINKAWKMVDDSTVKETKAKETAQQLKVEIANLSRLVEEG 460
           V +ALKL+++D+ T  +LK+EI KAWKMVD +  KE KAKET   LK EI NL++LVE+G
Sbjct: 78  VATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQG 137

Query: 461 AGLAIGEETALNELLKQKEELARERDAQVEQLMKYRSDLMETQEKLRAADAEKLQLDADI 640
           +GL++ + + + +LL+ KEE+ +ERD  + +++K R  L +T E+ +  +  K + +  I
Sbjct: 138 SGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAI 197

Query: 641 QHLRGTINDKKAEAERE 691
              +  I  ++ EA RE
Sbjct: 198 SQFQQEIQQRQNEASRE 214

>ref|XP_089747.2| similar to CG5882-PA [Homo sapiens]
          Length = 872

 Score =  169 bits (429), Expect = 3e-41
 Identities = 82/197 (41%), Positives = 134/197 (67%)
 Frame = +2

Query: 101 ETLEQYNKVLEELAADAVMDPFRVEYEKLHRALRKTYESQARLAKKCQELNSDISLNASK 280
           E    +  VL EL+ D  ++ FR+EYE+LH  ++K+Y+++ RL  KC+ELN++I +N++K
Sbjct: 18  EMERDFQGVLHELSGDKSLEKFRIEYERLHAVMKKSYDNEKRLMAKCRELNAEIVVNSAK 77

Query: 281 VQSALKLNEEDRETAVALKREINKAWKMVDDSTVKETKAKETAQQLKVEIANLSRLVEEG 460
           V +ALKL+++D+ T  +LK+EI KAWKMVD +  KE KAKET   LK EI NL++LVE+G
Sbjct: 78  VATALKLSQDDQTTIASLKKEIEKAWKMVDSAYDKEQKAKETILALKEEIVNLTKLVEQG 137

Query: 461 AGLAIGEETALNELLKQKEELARERDAQVEQLMKYRSDLMETQEKLRAADAEKLQLDADI 640
           +GL++ + + + +LL+ KEE+ +ERD  + +++K R  L +T E+ +  +  K + +  I
Sbjct: 138 SGLSMDQHSNIRDLLRFKEEVTKERDQLLSEVVKLRESLAQTTEQQQETERSKEEAEHAI 197

Query: 641 QHLRGTINDKKAEAERE 691
              +  I  ++ EA RE
Sbjct: 198 SQFQQEIQQRQNEASRE 214

>gb|EAA43024.1| GLP_170_182668_185370 [Giardia lamblia ATCC 50803]
          Length = 900

 Score =  126 bits (317), Expect = 3e-28
 Identities = 64/195 (32%), Positives = 124/195 (62%), Gaps = 3/195 (1%)
 Frame = +2

Query: 116 YNKVLEELAADAVMDPFRVEYEKLHRALRKTYESQARLAKKCQELNSDISLNASKVQSAL 295
           +++VL EL  D+ +D FR EYEKLH ALRK++E++  L ++ +EL  ++S+N  K+++AL
Sbjct: 34  FHEVLAELVGDSSLDLFRTEYEKLHTALRKSHENEKLLVQRVRELAQNLSINNQKIKTAL 93

Query: 296 KLNEEDRETAVALKREINKAWKMVDDSTVKETKAKETAQQLKVEIANLSRLVE---EGAG 466
           +L++ED+ T  +LK EI+KAWK+VD +  KE    E   +L+ E+ +L  +++    G  
Sbjct: 94  RLSKEDQSTISSLKAEIDKAWKIVDLAREKEGVQTEQIDKLRAEVQSLRGMIDTATAGTN 153

Query: 467 LAIGEETALNELLKQKEELARERDAQVEQLMKYRSDLMETQEKLRAADAEKLQLDADIQH 646
           + + EE  + +LL+ K  L +E + + +++   R +L +  ++++  ++EK+  +  ++ 
Sbjct: 154 VGVPEEQNIEDLLRAKAVLQQEYENRGKRISLLREELNQHLDRIKQLESEKVSSELRVRA 213

Query: 647 LRGTINDKKAEAERE 691
           L+  +   ++EA RE
Sbjct: 214 LKEQVAQHRSEAARE 228

>ref|XP_340400.1| hypothetical protein Tb927.2.3020 [Trypanosoma brucei]
           gi|33348433|gb|AAQ15759.1| hypothetical protein
           Tb927.2.3020 [Trypanosoma brucei]
          Length = 1032

 Score = 96.3 bits (238), Expect = 4e-19
 Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 3/194 (1%)
 Frame = +2

Query: 113 QYNKVLEELAADAVMDPFRVEYEKLHRALRKTYESQARLAKKCQELNSDISLNASKVQSA 292
           Q+ +VL  L  D V+  FR EY  L+ +  K+++ ++RL KKC EL +DI   +SK+ +A
Sbjct: 42  QFQEVLMSLENDEVLAAFRTEYASLYHSFLKSHDGESRLLKKCIELQADIDTCSSKLVTA 101

Query: 293 LKLNEEDRETAVALKREINKAWKMVDDSTVKETKAKETAQQLKVEIANLSRLVEEGAGLA 472
            +L+  D+ T   L+ EI K  K +D +  +E   K+    L+ E+ +L    EE + L 
Sbjct: 102 DELSRGDKNTIDTLRIEIEKTRKKIDVTKEREAALKDKVAALRRELRDL----EEKSHLQ 157

Query: 473 I---GEETALNELLKQKEELARERDAQVEQLMKYRSDLMETQEKLRAADAEKLQLDADIQ 643
           +    ++ A+  L +  E + +ER+ Q  QL   R D    ++++      K   D ++Q
Sbjct: 158 VELTSQKAAMQSLQRTLETVTKERELQALQLSSLRQDYSLLEKRMERLREVKDSGDMELQ 217

Query: 644 HLRGTINDKKAEAE 685
            +R  I++K+ EA+
Sbjct: 218 KMRSAIDEKQEEAD 231



EST assemble image


clone accession position
1 CL12c07_r AV393806 1 418
2 HCL089d06_r AV644489 255 691




Chlamydomonas reinhardtii
Kazusa DNA Research Institute