KCC000231A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000231A_C01 KCC000231A_c01
ccagggcaagtagactgccgatgctggtgctacatggattgtactgccgccgccgccgcc
tccacgcccgccgcctcctgCCCCTGCCCAGCCTGCTCCTGCCGCGCCGCTGCCTGCTCC
AGTTGCGGTGCCGGCACCTCTTCGCTGCACCGAGCCATCTGTCCCCGCACTCACTGCCGC
CGCAGCTGCCGCCGCCGCCGCAGCAGCCACTGCAGCCGACAATGTTCGGACTAGGCCTAG
TACGGCTTATTCTGGACTTAGCTACCGAGCATTAGGATGTTTGGACCCTGTGTAGACCAC
CTAGCGGTAGTATGTTTGGACCCTGTGTAGACATCCACTCCAGCATGAGCGAGTGGCATT
TGAGGACTGCTGTGCTGCATGTGCATGACAGTGAGACTGTGATGGGCGACAGAGCGCCTT
TGACTGTGATGCACTTACTGTCAGATCGTAGTTGCGTGGAAAGCGAGTGAGATGGTCGGT
TCAGGTAATCCTGAAACATGTGTGCAGCCAGGGTCCGCCGCAGATGTGGGATAGAGGCAG
TGTAACAGGTGCTCGTGGAATGAAGAGTTTCATGTGTTTCTCCGTGGATTGTACGGTTCC
CCCGTGTTTCTGTTTTCGAATCGCGTCTCAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000231A_C01 KCC000231A_c01
         (631 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_009060.2| zinc finger protein of the cerebellum 2 [Homo s...    65  8e-10
gb|AAC96325.1| ZIC2 protein [Homo sapiens]                             65  8e-10
ref|NP_788310.1| longitudinals lacking CG12052-PJ [Drosophila me...    62  9e-09
dbj|BAC67591.1| Lola protein isoform O [Drosophila melanogaster]...    62  9e-09
dbj|BAA11115.2| Zic2 protein [Mus musculus]                            61  1e-08

>ref|NP_009060.2| zinc finger protein of the cerebellum 2 [Homo sapiens]
           gi|20178334|sp|O95409|ZIC2_HUMAN Zinc finger protein ZIC
           2 (Zinc finger protein of the cerebellum 2)
           gi|11065970|gb|AAG28409.1|AF193855_1 zinc finger protein
           of cerebellum ZIC2 [Homo sapiens]
          Length = 532

 Score = 65.1 bits (157), Expect = 8e-10
 Identities = 36/60 (60%), Positives = 41/60 (68%)
 Frame = -2

Query: 219 SAAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAGAGGGGRGGGGGGST 40
           +AA AAAAAAAAAAAVSA     V R G   + GAG G+ G   +G GGGG GGGGGGS+
Sbjct: 456 AAAAAAAAAAAAAAAVSA-----VHRGGGSGSGGAGGGSGGGSGSGGGGGGAGGGGGGSS 510

 Score = 58.9 bits (141), Expect = 6e-08
 Identities = 33/59 (55%), Positives = 37/59 (61%)
 Frame = -2

Query: 219 SAAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAGAGGGGRGGGGGGS 43
           +AA AAAAAAAAAA  +    G     GAG  +G GSG+ G G  GAGGGG G  GGGS
Sbjct: 457 AAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGG-GGAGGGGGGSSGGGS 514

>gb|AAC96325.1| ZIC2 protein [Homo sapiens]
          Length = 533

 Score = 65.1 bits (157), Expect = 8e-10
 Identities = 36/60 (60%), Positives = 41/60 (68%)
 Frame = -2

Query: 219 SAAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAGAGGGGRGGGGGGST 40
           +AA AAAAAAAAAAAVSA     V R G   + GAG G+ G   +G GGGG GGGGGGS+
Sbjct: 457 AAAAAAAAAAAAAAAVSA-----VHRGGGSGSGGAGGGSGGGSGSGGGGGGAGGGGGGSS 511

 Score = 58.9 bits (141), Expect = 6e-08
 Identities = 33/59 (55%), Positives = 37/59 (61%)
 Frame = -2

Query: 219 SAAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAGAGGGGRGGGGGGS 43
           +AA AAAAAAAAAA  +    G     GAG  +G GSG+ G G  GAGGGG G  GGGS
Sbjct: 458 AAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGG-GGAGGGGGGSSGGGS 515

>ref|NP_788310.1| longitudinals lacking CG12052-PJ [Drosophila melanogaster]
           gi|28380919|gb|AAF58779.2| CG12052-PJ [Drosophila
           melanogaster]
          Length = 937

 Score = 61.6 bits (148), Expect = 9e-09
 Identities = 37/64 (57%), Positives = 41/64 (63%)
 Frame = -2

Query: 237 GLVRTLSAAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAGAGGGGRGG 58
           G   T +AA AAAAAAAAAAA +AG  GSV       ++G GSG AG G  G G GG GG
Sbjct: 642 GGASTSAAAAAAAAAAAAAAAAAAG--GSV---AGNWSSGGGSGGAGGGIGGGGSGGGGG 696

Query: 57  GGGG 46
           GGGG
Sbjct: 697 GGGG 700

 Score = 42.4 bits (98), Expect = 0.006
 Identities = 30/61 (49%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 219 SAAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAGAGGGGRGG--GGGG 46
           SAA AAAAAAAAAAA +A                AG   AG   +G G GG GG  GGGG
Sbjct: 647 SAAAAAAAAAAAAAAAAA----------------AGGSVAGNWSSGGGSGGAGGGIGGGG 690

Query: 45  S 43
           S
Sbjct: 691 S 691

 Score = 40.0 bits (92), Expect = 0.028
 Identities = 25/61 (40%), Positives = 28/61 (44%), Gaps = 3/61 (4%)
 Frame = -2

Query: 216 AAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAG---AGGGGRGGGGGG 46
           AA AAA  AA   + S  T G      A  A  A + AA A  AG   AG    GGG GG
Sbjct: 622 AAAAAAGLAANNTSASTNTGGGASTSAAAAAAAAAAAAAAAAAAGGSVAGNWSSGGGSGG 681

Query: 45  S 43
           +
Sbjct: 682 A 682

>dbj|BAC67591.1| Lola protein isoform O [Drosophila melanogaster]
           gi|29539457|dbj|BAC67611.1| Lola protein isoform O
           [Drosophila melanogaster] gi|29539497|dbj|BAC67631.1|
           Lola protein isoform O [Drosophila melanogaster]
           gi|29539537|dbj|BAC67651.1| Lola protein isoform O
           [Drosophila melanogaster]
          Length = 757

 Score = 61.6 bits (148), Expect = 9e-09
 Identities = 37/64 (57%), Positives = 41/64 (63%)
 Frame = -2

Query: 237 GLVRTLSAAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAGAGGGGRGG 58
           G   T +AA AAAAAAAAAAA +AG  GSV       ++G GSG AG G  G G GG GG
Sbjct: 642 GGASTSAAAAAAAAAAAAAAAAAAG--GSV---AGNWSSGGGSGGAGGGIGGGGSGGGGG 696

Query: 57  GGGG 46
           GGGG
Sbjct: 697 GGGG 700

 Score = 42.4 bits (98), Expect = 0.006
 Identities = 30/61 (49%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 219 SAAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAGAGGGGRGG--GGGG 46
           SAA AAAAAAAAAAA +A                AG   AG   +G G GG GG  GGGG
Sbjct: 647 SAAAAAAAAAAAAAAAAA----------------AGGSVAGNWSSGGGSGGAGGGIGGGG 690

Query: 45  S 43
           S
Sbjct: 691 S 691

 Score = 40.0 bits (92), Expect = 0.028
 Identities = 25/61 (40%), Positives = 28/61 (44%), Gaps = 3/61 (4%)
 Frame = -2

Query: 216 AAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAG---AGGGGRGGGGGG 46
           AA AAA  AA   + S  T G      A  A  A + AA A  AG   AG    GGG GG
Sbjct: 622 AAAAAAGLAANNTSASTNTGGGASTSAAAAAAAAAAAAAAAAAAGGSVAGNWSSGGGSGG 681

Query: 45  S 43
           +
Sbjct: 682 A 682

>dbj|BAA11115.2| Zic2 protein [Mus musculus]
          Length = 530

 Score = 61.2 bits (147), Expect = 1e-08
 Identities = 36/60 (60%), Positives = 42/60 (70%)
 Frame = -2

Query: 219 SAAVAAAAAAAAAAAVSAGTDGSVQRRGAGTATGAGSGAAGAGWAGAGGGGRGGGGGGST 40
           +AA AAAAAAAAAAAVSA        RGAG+ + +GSG   A  +G GGGG GGGGGGS+
Sbjct: 456 AAAAAAAAAAAAAAAVSA------VHRGAGSGS-SGSGGGSAAGSGGGGGGAGGGGGGSS 508



EST assemble image


clone accession position
1 LC079a11_r AV624533 1 486
2 CL12c06_r AV393816 263 631




Chlamydomonas reinhardtii
Kazusa DNA Research Institute