KCC000229A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000229A_C02 KCC000229A_c02
gCGAATCCCTGTATAGTTACGCACTTGGGGTTGGCCCTAGGATATGGCTTTGGTCGGCCT
GCGGGCGGCTTTGGAGAGCCTGCTCGGGCCTGCAAGAGCTGGCAGGTTCACCGACGCAGA
CCTGCGCCTGCTATTGGAGGGTGGCTACGCTACGCTGGATGACCTGAAGGATGCCAGCTA
TACAGGCCTCCAGCAAGCCGGGCTCAAACCCGCGAGGGCGGACCAAATTTTCCACGCGCA
AGGTTCGGCAACCAGCCTGGGGGTGGAGAGCACGACAGGATTCGGCCCGCCAGCTTGCAA
GCTGCAGCTCCGGCAAGACTCGCAGAACCAGGACCTGTTCTTCTTCGAGCCCATGGATAC
CATCAGCGGTGCAGCTCCCGCAAGTCCAGGCGTGAGCAGCAGCTTCTTCCTGGACCCCGA
GGGCAGGCAGACAGATGAGCTGCAGAATTGGCTGTGCCTCGCCAAGGAATTGTACCGTGC
GGGCAAACCCATCCTGCCGCTGTTCATCAATGGTCCGGTCAAGAGCGGCAAGTCCTTCAT
GCTCAACAACGTCCTGCCTGCTGTGGCCAATACCTACTGCAGCGGCGGCAGCGACCGGCA
GCACACCGGCGCAATGCTTTCAGGGCCCAACTTCCTGCGTGTAAGCTGCTTGGGCTGCGA
CCGCAGCAGTGGCAGCAGCGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000229A_C02 KCC000229A_c02
         (682 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300...    44  0.002
ref|NP_612406.1| hypothetical protein BC012317 [Homo sapiens] gi...    42  0.009
ref|ZP_00102424.1| COG3706: Response regulator containing a CheY...    41  0.015
ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177...    41  0.019
gb|AAP80676.1|AF479057_1 ocs-element binding factor 1 [Triticum ...    40  0.033

>ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300834|gb|EAA12979.1|
           ENSANGP00000004917 [Anopheles gambiae str. PEST]
          Length = 257

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 39/135 (28%), Positives = 55/135 (39%)
 Frame = +3

Query: 213 RGRTKFSTRKVRQPAWGWRARQDSARQLASCSSGKTRRTRTCSSSSPWIPSAVQLPQVQA 392
           R  T+ S R  + P  GWR+   + R+  + +   TRRT    +     PS  +      
Sbjct: 137 RSSTRSSARSPQSPTAGWRSFAPTPRRPCTAADSGTRRTAASGTRCRGTPSGTR------ 190

Query: 393 *AAASSWTPRAGRQMSCRIGCASPRNCTVRANPSCRCSSMVRSRAASPSCSTTSCLLWPI 572
               S+  P A    S R    SPR     + PS R S+   SRA+  +CS       P 
Sbjct: 191 ---CSAPAPCAASPASARSPPVSPRTARSASRPSSR-SASAPSRASPRTCSCR-----PP 241

Query: 573 PTAAAAATGSTPAQC 617
           P    ++T S PA C
Sbjct: 242 P---RSSTVSRPASC 253

>ref|NP_612406.1| hypothetical protein BC012317 [Homo sapiens]
           gi|15147367|gb|AAH12317.1| Hypothetical protein BC012317
           [Homo sapiens]
          Length = 137

 Score = 42.0 bits (97), Expect = 0.009
 Identities = 30/93 (32%), Positives = 40/93 (42%), Gaps = 5/93 (5%)
 Frame = -3

Query: 674 CHCCGRSPSSLHAGSWALKAL--RRCAAGRCR-RCSRYWPQQA--GRC*A*RTCRS*PDH 510
           C CCGR  +   A +WA +A   R C    CR  C+  W  +A  GR    R  RS    
Sbjct: 43  CECCGRRAAGAAASAWASRAWTPRACPCPACRPSCAPTWRSRARRGRPCCLRAARSLGTW 102

Query: 509 **TAAGWVCPHGTIPWRGTANSAAHLSACPRGP 411
             +A+GW     + P    A  +  + ACP  P
Sbjct: 103 --SASGWTAAAASSPRSTPAAGSCCVRACPSAP 133

 Score = 32.0 bits (71), Expect = 8.9
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 399 AASSWTPRAGRQMSCRIGCASP-RNCTVRANPSCRCSSMVRSRAASPSCSTTSCLLWPIP 575
           A+ +WTPRA    +CR  CA   R+   R  P C          A+ S  T S   W   
Sbjct: 59  ASRAWTPRACPCPACRPSCAPTWRSRARRGRPCC--------LRAARSLGTWSASGW--T 108

Query: 576 TAAAAATGSTPA 611
            AAA++  STPA
Sbjct: 109 AAAASSPRSTPA 120

>ref|ZP_00102424.1| COG3706: Response regulator containing a CheY-like receiver domain
           and a GGDEF domain [Desulfitobacterium hafniense]
          Length = 498

 Score = 41.2 bits (95), Expect = 0.015
 Identities = 62/219 (28%), Positives = 78/219 (35%), Gaps = 14/219 (6%)
 Frame = +1

Query: 52  GRPAGGF-----GEPARACKSWQVHRRRPAPAIGGWLRYAG*PEG--CQLYRPPASRAQT 210
           GRPAGGF     G+PA        HRR+  P  G   R    P G   Q  R PA+R   
Sbjct: 6   GRPAGGFRRRGRGDPA--------HRRKIRPRHGRMARPLRAPAGRHRQCRRRPAAR--- 54

Query: 211 REGGPNFPRARFGNQPGGGEHDRIRPASLQAAAPARLAEPGPVLLRAHG-----YHQRCS 375
                          PG    D+  P + +   P   A  G   + A G      H+R  
Sbjct: 55  ---------------PGAAGGDQRPPGAARRRPPGLCARTGRTAIPALGGRFLQKHRRTL 99

Query: 376 SRKSRREQQLLPGPRGQADR*AAELAVPRQGIVPCGQTHPAAVHQWSGQERQVLHAQQRP 555
           +R  R       GPR             R+   P  +T P       G +R + HAQ R 
Sbjct: 100 ARPHRWRAADRDGPR------------RRRRPAPAARTRPPHHRPGPGLQRGLRHAQGR- 146

Query: 556 ACCGQYLLQRRQRPAA--HRRNAFRAQLPACKLLGLRPQ 666
               +   +R + PAA  HRR   R   P      LRPQ
Sbjct: 147 ----RRARRRGRNPAAGPHRRALARPLRP-----DLRPQ 176

>ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177813|gb|EAA06779.2|
           ENSANGP00000001657 [Anopheles gambiae str. PEST]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.019
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
 Frame = +3

Query: 297 ASCSSGKTRRTRTCSSSSPWIPSA---VQLPQVQA*AAASSWTPRAGRQMSCRIGCASPR 467
           +SCSSG + R+ + +SSS    S           A + +SS +  +    SCR G +S  
Sbjct: 81  SSCSSGTSSRSSSTTSSSSGTSSCSSGTTSSSSCASSCSSSTSSCSSGTSSCRSGTSSCS 140

Query: 468 NCTVRANPSCRCSSMVRSRAASP------SCSTTSCLLWPIPTAAAAATGSTPAQCFQGP 629
           +CT     SC C +   S  AS       S STTSC      +  A+++ S  + C    
Sbjct: 141 SCTT----SCSCCTSSCSSCASSCSSCASSSSTTSC------SCCASSSSSCASSCSSCA 190

Query: 630 TSC 638
           +SC
Sbjct: 191 SSC 193

 Score = 37.0 bits (84), Expect = 0.28
 Identities = 32/129 (24%), Positives = 53/129 (40%), Gaps = 1/129 (0%)
 Frame = +3

Query: 285 ARQLASC-SSGKTRRTRTCSSSSPWIPSAVQLPQVQA*AAASSWTPRAGRQMSCRIGCAS 461
           A   +SC SS  T     C+SSS    S+         + ASS +       SC   C+S
Sbjct: 157 ASSCSSCASSSSTTSCSCCASSSSSCASSCSSCASSCSSCASSCSSGTTSSSSCASSCSS 216

Query: 462 PRNCTVRANPSCRCSSMVRSRAASPSCSTTSCLLWPIPTAAAAATGSTPAQCFQGPTSCV 641
             + +     SC       S   S SC T+SC      T+++ +  +  + C    +SC 
Sbjct: 217 STSSSSSGTTSC------SSGTTSSSCCTSSC---SSSTSSSCSGTTASSSCASSCSSCA 267

Query: 642 *AAWAATAA 668
            +  ++T++
Sbjct: 268 SSCSSSTSS 276

 Score = 36.2 bits (82), Expect = 0.47
 Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 4/199 (2%)
 Frame = +3

Query: 54  SACGRLWRACSGLQELAGSPTQTCACYWRVATLRWMT*RMPAIQASSKPGSNPRGRTKFS 233
           ++C     +CS       S T +C+      T    +        SS   S     T  S
Sbjct: 39  TSCSSCTSSCSSGTSSCSSATSSCSSGTTSCTSSTSSSNSCTSSCSSGTSSRSSSTTSSS 98

Query: 234 TRKVRQPAWGWRARQDSARQLASCSSGKTRRTRTCSSSSPWIPSAVQLPQ---VQA*AAA 404
           +        G  +        +SC+S  +  T +CSS +    S                
Sbjct: 99  S--------GTSSCSSGTTSSSSCASSCSSSTSSCSSGTSSCRSGTSSCSSCTTSCSCCT 150

Query: 405 SSWTPRAGRQMSCRIGCASPRNCTVRANPSCRCSSMVRSRAASPSCSTTSCLLWPIPTAA 584
           SS +  A    SC    +S  +C+  A+ S  C+S   S A+S S   +SC      +++
Sbjct: 151 SSCSSCASSCSSCA-SSSSTTSCSCCASSSSSCASSCSSCASSCSSCASSCSSGTTSSSS 209

Query: 585 AAAT-GSTPAQCFQGPTSC 638
            A++  S+ +    G TSC
Sbjct: 210 CASSCSSSTSSSSSGTTSC 228

 Score = 33.9 bits (76), Expect = 2.3
 Identities = 38/141 (26%), Positives = 61/141 (42%), Gaps = 14/141 (9%)
 Frame = +3

Query: 297 ASCSSGK----------TRRTRTCSSSSPWIPSAVQLPQVQA*AAASSWTPRAGRQMSCR 446
           +SCSSG           +  T +C+SS+    S          + +SS T  +    SC 
Sbjct: 46  SSCSSGTSSCSSATSSCSSGTTSCTSSTSSSNSCTSSCSSGTSSRSSSTTSSSSGTSSCS 105

Query: 447 IGCASPRNCTVRANPS-CRCSSMVRS-RAASPSCS--TTSCLLWPIPTAAAAATGSTPAQ 614
            G  S  +C    + S   CSS   S R+ + SCS  TTSC       ++ A++ S+ A 
Sbjct: 106 SGTTSSSSCASSCSSSTSSCSSGTSSCRSGTSSCSSCTTSCSCCTSSCSSCASSCSSCAS 165

Query: 615 CFQGPTSCV*AAWAATAAVAA 677
                TSC   A ++++  ++
Sbjct: 166 S-SSTTSCSCCASSSSSCASS 185

>gb|AAP80676.1|AF479057_1 ocs-element binding factor 1 [Triticum aestivum]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.033
 Identities = 42/148 (28%), Positives = 57/148 (38%), Gaps = 9/148 (6%)
 Frame = +3

Query: 213 RGRTKFSTRKVRQPAWGWRARQDSARQLASCSSGKTRRTRTCSSSSPWIPSAVQL----P 380
           R RT    R+ R    G R           C +G  R  R C SSS W     +     P
Sbjct: 57  RARTATRGRRSRPGTTGGRR--------GGCRTGSRRGGRGCGSSSTWTSWCRRWRGSRP 108

Query: 381 QVQA*AAASSWTPRAGRQMSCRIGCA--SPRNCTVRANPSCRCSSMVRSRAASPSCSTTS 554
           + +A   A + +P +    + R  C+  +P +      PS RCS+  RS AASP  S  S
Sbjct: 109 RTRACWRAPTTSPGSSCAWTRRTPCSGRAPPSSATGCAPSTRCSASSRSSAASPWTSRRS 168

Query: 555 CLLWPIPTAAAAATG---STPAQCFQGP 629
                 PT   +  G   + P  C   P
Sbjct: 169 AR----PTTPCSGRGRSRTLPPPCPSTP 192



EST assemble image


clone accession position
1 LCL048c01_r AV628866 1 304
2 LCL090b07_r AV631200 2 443
3 CL12c01_r AV393827 13 470
4 HCL011c01_r AV640146 16 396
5 LCL040c12_r AV628341 17 349
6 CL49g03_r AV397748 20 430
7 LCL028c11_r AV627546 20 485
8 CL22e04_r AV394215 20 547
9 MXL017e02_r BP094051 31 351
10 MXL010b09_r BP093563 73 317
11 MXL010c02_r BP093567 73 397
12 HCL059e08_r AV642866 177 682
13 LCL051g12_r AV629089 237 682




Chlamydomonas reinhardtii
Kazusa DNA Research Institute