KCC000228A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000228A_C01 KCC000228A_c01
catgcatgtaggcgcataagtgtCTCATTGAAGAAGACATTGCACAGAGCAAGGCGTTAC
CTACTGCGATGCACTGAGAACGGGACTCACAACAAGACCTTTGACTGGAATCTAGTTCTG
TGTAGGCAACAATGGTGCTCCCATTCATAGGCGCAGGCATCGCAACCGGGATAGGCACCC
TTGCGGGGCTTTCGCTGGGACCCTACATCTTTTCAGCTCTCACAAAGCCCACCAGCTACT
ACCTGTTGCGCGAGGAGGTGGACAATGACCACAAGGTCCCGGCGCCGGAGCCGGGCCTGC
TGGTGCAGACGCAGTACCGCAACGCGCTGCCGCTGCTGGAGCCCTGGGTCACCGACCCCG
ATTATGAGCGGACCTCCATGATCAACCGCCTGACGGCCACGGTGTGGCCCACGATGACCA
AGGCCATCATCGACATGATCGTGCAGGGCGACGTGTACAACACAGTGCTGTACCCGCAGC
TGCAGGCGCAGGTGTTCAGCAAGTACGCGTTCGTGGAGGACATCTTCCTGGGCCCGCACT
CGCTCAAGCACGGCAAGATCGACCTCAAGACCAACCCCTTCCTGGCCGACAAGCTGTTCA
CTGTGGGCGGCGTGGCTCCCCGCATCGGCGGCATGCGTGTGGTGCCCACCTCGGATGACG
AGGTACTGCTGGAGACGTCCATGATCTGGGGCAGCCAGGCGCAGTTCGACGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000228A_C01 KCC000228A_c01
         (713 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_173436.1| C2 domain-containing protein [Arabidopsis thali...    56  5e-07
dbj|BAB62594.1| P0454H12.27 [Oryza sativa (japonica cultivar-gro...    55  8e-07
ref|NP_565495.1| C2 domain-containing protein [Arabidopsis thali...    51  2e-05
gb|AAC82365.1| unknown [Myxococcus xanthus]                            47  2e-04
gb|AAP80676.1|AF479057_1 ocs-element binding factor 1 [Triticum ...    45  9e-04

>ref|NP_173436.1| C2 domain-containing protein [Arabidopsis thaliana]
           gi|25518564|pir||E86334 hypothetical protein T20H2.13
           [imported] - Arabidopsis thaliana
           gi|8778989|gb|AAF79904.1|AC022472_13 Contains similarity
           to CaLB protein from Arabidopsis thaliana gb|X96598 and
           contains multiple C2 PF|00168 domains
          Length = 535

 Score = 56.2 bits (134), Expect = 5e-07
 Identities = 46/177 (25%), Positives = 72/177 (39%)
 Frame = +3

Query: 159 IATGIGTLAGLSLGPYIFSALTKPTSYYLLREEVDNDHKVPAPEPGLLVQTQYRNALPLL 338
           I  G GT  G+ +G Y+F          +  +  D+    P  E   L         P +
Sbjct: 11  IGFGFGTTIGIVIGYYLF----------IYFQSTDDPEIKPLVE---LDSETIATMFPEI 57

Query: 339 EPWVTDPDYERTSMINRLTATVWPTMTKAIIDMIVQGDVYNTVLYPQLQAQVFSKYAFVE 518
             WV +PD++R   +N+L   +WP M KAI  M                A+  +K    E
Sbjct: 58  PMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKM----------------AKSIAKPIIAE 101

Query: 519 DIFLGPHSLKHGKIDLKTNPFLADKLFTVGGVAPRIGGMRVVPTSDDEVLLETSMIW 689
            I        + KID      +  ++ T+G + P   GM+V  T D E+++E S+ W
Sbjct: 102 QI-------PNYKID-----SVEFEMLTLGSLPPSFQGMKVYATDDKEIIMELSVKW 146

>dbj|BAB62594.1| P0454H12.27 [Oryza sativa (japonica cultivar-group)]
           gi|21104782|dbj|BAB93369.1| OJ1529_G03.5 [Oryza sativa
           (japonica cultivar-group)]
          Length = 476

 Score = 55.5 bits (132), Expect = 8e-07
 Identities = 50/187 (26%), Positives = 79/187 (41%)
 Frame = +3

Query: 129 TMVLPFIGAGIATGIGTLAGLSLGPYIFSALTKPTSYYLLREEVDNDHKVPAPEPGLLVQ 308
           +MVL FIG  I   +G + G  L  Y      K      L  E D+D             
Sbjct: 5   SMVLSFIGFCIGFSVGIVIGYFLFIYFQPTDVKNVKVRPL-VEYDSD------------- 50

Query: 309 TQYRNALPLLEPWVTDPDYERTSMINRLTATVWPTMTKAIIDMIVQGDVYNTVLYPQLQA 488
               + LP +  W+ +PDY+R   +NR    +WP + KAI    +  DV N ++     A
Sbjct: 51  -SLDDTLPEIPLWLKNPDYDRLDWLNRFLELMWPYLNKAICR--IAQDVANPII-----A 102

Query: 489 QVFSKYAFVEDIFLGPHSLKHGKIDLKTNPFLADKLFTVGGVAPRIGGMRVVPTSDDEVL 668
           +   KY                KID     ++  + FT+G + P   G++V  T++ E++
Sbjct: 103 KNKEKY----------------KID-----YIKFETFTLGSLPPTFQGVKVQVTNEQELV 141

Query: 669 LETSMIW 689
           +E S+ W
Sbjct: 142 MEPSLKW 148

>ref|NP_565495.1| C2 domain-containing protein [Arabidopsis thaliana]
           gi|15027959|gb|AAK76510.1| unknown protein [Arabidopsis
           thaliana] gi|20197686|gb|AAM15203.1| expressed protein
           [Arabidopsis thaliana] gi|20197724|gb|AAD29817.2|
           expressed protein [Arabidopsis thaliana]
           gi|21593508|gb|AAM65475.1| unknown [Arabidopsis
           thaliana] gi|28393915|gb|AAO42365.1| unknown protein
           [Arabidopsis thaliana] gi|31071599|dbj|BAC76812.1|
           synaptotagmin A [Arabidopsis thaliana]
          Length = 541

 Score = 50.8 bits (120), Expect = 2e-05
 Identities = 44/187 (23%), Positives = 72/187 (37%)
 Frame = +3

Query: 135 VLPFIGAGIATGIGTLAGLSLGPYIFSALTKPTSYYLLREEVDNDHKVPAPEPGLLVQTQ 314
           +L F G G+   +G + G  L  Y+     K      +R   D D K             
Sbjct: 7   ILGFCGFGVGISLGLVIGYVLFVYLLPNDVKDPE---IRSIADQDPKAML---------- 53

Query: 315 YRNALPLLEPWVTDPDYERTSMINRLTATVWPTMTKAIIDMIVQGDVYNTVLYPQLQAQV 494
               LP +  WV +PD++R   INR    +WP + KAI            +  P ++ Q+
Sbjct: 54  --RMLPEIPLWVKNPDFDRVDWINRFLEYMWPYLDKAIC------KTAKNIAKPIIEEQI 105

Query: 495 FSKYAFVEDIFLGPHSLKHGKIDLKTNPFLADKLFTVGGVAPRIGGMRVVPTSDDEVLLE 674
             KY             K   ++ +T         T+G + P   GM+V  T + E+++E
Sbjct: 106 -PKY-------------KIDSVEFET--------LTLGSLPPTFQGMKVYLTDEKELIME 143

Query: 675 TSMIWGS 695
             + W +
Sbjct: 144 PCLKWAA 150

>gb|AAC82365.1| unknown [Myxococcus xanthus]
          Length = 542

 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 58/183 (31%), Positives = 69/183 (37%), Gaps = 25/183 (13%)
 Frame = -3

Query: 711 RRTAPGCPR--SWTSPAVPRHPRWAPHA-CRRCGEPRRPQ*TAC-----RPGRGWS*GRS 556
           R   P C R      PA  RH R  P    RRCG PR+   T C      P R       
Sbjct: 75  RSFRPTCARRSGRRCPAPSRHARRNPAGPSRRCGPPRKSTPTRCCTPCPAPPR------- 127

Query: 555 CRA*ASAGPGRCPPRTRTC*TPAPAAAGTALCCTRRPARSCR*WPWSSWATPWPSGG*SW 376
           CRA  SA     P   RTC T  P++  +  C T R   +    P  +  +P PS   S 
Sbjct: 128 CRARPSAP---APSAGRTCPTAGPSSCASGCCPTGRCGSAPGPTPHGAEPSP-PSQSPSP 183

Query: 375 RSAHNRGR*---PRAPAAAARCGTASAPAGP--------------APAPGPCGHCPPPRA 247
             A + GR    PR   A+A   TA A   P              AP      H PPPR+
Sbjct: 184 APASSGGRRRTHPRPARASAAGATAPACLPPPRCCGRPGTGCARTAPPSTSASHPPPPRS 243

Query: 246 TGS 238
            G+
Sbjct: 244 PGT 246

 Score = 37.4 bits (85), Expect = 0.23
 Identities = 56/195 (28%), Positives = 69/195 (34%), Gaps = 17/195 (8%)
 Frame = -3

Query: 690 PRSWTSPAVPRHPRWAPHACRRCGEPRRPQ*TACRPGRGWS*GRSCRA*AS------AGP 529
           P++   P  PR P  +P   RR    R     + RP      GR C A +       AGP
Sbjct: 47  PQAVPGPCAPRAPPRSPPPRRRHRGSRH---RSFRPTCARRSGRRCPAPSRHARRNPAGP 103

Query: 528 GR-C-PPRTRT---C*TPAPAAAGTALCCTRRPARSCR*WPWSSWATPWPSGG*SWRSAH 364
            R C PPR  T   C TP PA       C  RP+             P PS G   R+  
Sbjct: 104 SRRCGPPRKSTPTRCCTPCPAPPR----CRARPS------------APAPSAG---RTCP 144

Query: 363 NRGR*PRAPAAAA----RCGTASAPA--GPAPAPGPCGHCPPPRATGSSWWAL*ELKRCR 202
             G  P + A+      RCG+A  P   G  P+P      P P ++G          R  
Sbjct: 145 TAG--PSSCASGCCPTGRCGSAPGPTPHGAEPSPPSQSPSPAPASSGGRRRTHPRPARAS 202

Query: 201 VPAKAPQGCLSRLRC 157
                   CL   RC
Sbjct: 203 AAGATAPACLPPPRC 217

 Score = 37.4 bits (85), Expect = 0.23
 Identities = 38/122 (31%), Positives = 42/122 (34%)
 Frame = -3

Query: 531 PGRCPPRTRTC*TPAPAAAGTALCCTRRPARSCR*WPWSSWATPWPSGG*SWRSAHNRGR 352
           PG  PP T T   P P A     C  R P RS             P       S H   R
Sbjct: 32  PGARPPPTETASYPPPQAV-PGPCAPRAPPRSP------------PPRRRHRGSRHRSFR 78

Query: 351 *PRAPAAAARCGTASAPAGPAPAPGPCGHCPPPRATGSSWWAL*ELKRCRVPAKAPQGCL 172
              A  +  RC   S  A   PA GP   C PPR +  +        RC  P  AP  C 
Sbjct: 79  PTCARRSGRRCPAPSRHARRNPA-GPSRRCGPPRKSTPT--------RCCTPCPAPPRCR 129

Query: 171 SR 166
           +R
Sbjct: 130 AR 131

 Score = 35.4 bits (80), Expect = 0.89
 Identities = 45/164 (27%), Positives = 57/164 (34%), Gaps = 23/164 (14%)
 Frame = +1

Query: 277 SRRRSRACWCRRSTATRC----------------RCWSPGSPTPIMSGPP*STA*RPRCG 408
           SR RS    C R +  RC                RC  P   TP     P     R R  
Sbjct: 72  SRHRSFRPTCARRSGRRCPAPSRHARRNPAGPSRRCGPPRKSTPTRCCTPCPAPPRCRAR 131

Query: 409 PR*PRPSST*SC----RATCTTQCC-TRSCRRRCSASTRSWRTSSWARTRSSTARSTS-- 567
           P  P PS+  +C     ++C + CC T  C      +      S  +++ S    S+   
Sbjct: 132 PSAPAPSAGRTCPTAGPSSCASGCCPTGRCGSAPGPTPHGAEPSPPSQSPSPAPASSGGR 191

Query: 568 RPTPSWPTSCSLWAAWLPASAACVWCPPRMTRYCWRRP*SGAAR 699
           R T   P   S   A  PA       PPR    C  RP +G AR
Sbjct: 192 RRTHPRPARASAAGATAPACLP----PPR----CCGRPGTGCAR 227

>gb|AAP80676.1|AF479057_1 ocs-element binding factor 1 [Triticum aestivum]
          Length = 210

 Score = 45.4 bits (106), Expect = 9e-04
 Identities = 51/157 (32%), Positives = 61/157 (38%), Gaps = 11/157 (7%)
 Frame = +1

Query: 223 QSPPATTCCARRWTMTTRSRRRSRAC--------WCRRSTATRCR---CWSPGSPTPIMS 369
           +S P TT   RR    T SRR  R C        WCRR   +R R   CW   + +P   
Sbjct: 66  RSRPGTTG-GRRGGCRTGSRRGGRGCGSSSTWTSWCRRWRGSRPRTRACWRAPTTSP--- 121

Query: 370 GPP*STA*RPRCGPR*PRPSST*SCRATCTTQCCTRSCRRRCSASTRSWRTSSWARTRSS 549
           G   +   R  C  R P PSS   C  +            RCSAS+RS   S W      
Sbjct: 122 GSSCAWTRRTPCSGRAP-PSSATGCAPST-----------RCSASSRSSAASPW------ 163

Query: 550 TARSTSRPTPSWPTSCSLWAAWLPASAACVWCPPRMT 660
           T+R ++RPT    T CS           C   PP  T
Sbjct: 164 TSRRSARPT----TPCSGRGRSRTLPPPCPSTPPPRT 196

 Score = 32.0 bits (71), Expect = 9.8
 Identities = 50/161 (31%), Positives = 57/161 (35%), Gaps = 2/161 (1%)
 Frame = -3

Query: 711 RRTAPGCPRS--WTSPAVPRHPRWAPHACRRCGEPRRPQ*TACRPGRGWS*GRSCRA*AS 538
           RR   GC  S  WTS        W    CRR     RP+  AC      S G SC     
Sbjct: 84  RRGGRGCGSSSTWTS--------W----CRRW-RGSRPRTRACWRAPTTSPGSSC----- 125

Query: 537 AGPGRCPPRTRTC*TPAPAAAGTALCCTRRPARSCR*WPWSSWATPWPSGG*SWRSAHNR 358
           A   R P     C   AP ++ T    + R + S R    SS A+PW S     RSA   
Sbjct: 126 AWTRRTP-----CSGRAPPSSATGCAPSTRCSASSR----SSAASPWTSR----RSAR-- 170

Query: 357 GR*PRAPAAAARCGTASAPAGPAPAPGPCGHCPPPRATGSS 235
              P  P         S        P PC   PPPR   S+
Sbjct: 171 ---PTTPC--------SGRGRSRTLPPPCPSTPPPRTCSST 200



EST assemble image


clone accession position
1 MXL083h05_r BP097941 1 344
2 HCL083e09_r AV644188 24 550
3 MXL014d10_r BP093832 26 469
4 MXL039d11_r BP095290 26 502
5 HCL038e04_r AV641674 32 463
6 CL12a07_r AV393803 180 713




Chlamydomonas reinhardtii
Kazusa DNA Research Institute