KCC000222A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000222A_C01 KCC000222A_c01
ATAACTTATTTATAAGATCAATTATGCAGACCCTAAAGCCGGGCGCTGCGCGTCCAAACA
TTCTCCGACGGGCTTCTCGCACTCACTCAGTCGCAGCGATGGGCTTCTTCAACTTTGGCA
GTCTATTTAGCAAGGAGCAATGTAAGCTCGCGCCTGCGCAGGCCCCAGAGGGACTGAAGT
TGGCGACGTTCGCGGGCGGCTGCTTCTGGGGCATTGAGCTGGCCTACCAGCGCGTGCCGG
GCGTGGTGGCCACCACCGTGGGCTACACCGGAGGCGCCGACAAGAACCCCAACTACGACT
CTGTGTGCAGCGGCCGGTCGGGGCATGCTGAGGCCATCCAGTGCACCTACGACCCCAAGC
AATGCAGCTACGACTGCCCTACTGGACACGTTCTTCGCACGTGTGGATCCAACCACCCTC
AACCGCCAGGGCAACGACCGCGGCACGCAGTACCGCTCCGCCATTTACTACCACGACGAG
CAGTAGCGCGCGGCGGCGGCGGCGCGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000222A_C01 KCC000222A_c01
         (508 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM65092.1| protein-methionine-S-oxide reductase [Arabidopsis...    99  1e-31
ref|NP_194243.1| protein-methionine-S-oxide reductase [Arabidops...    99  1e-31
gb|AAK83645.1| AT4g25130/F13M23_270 [Arabidopsis thaliana] gi|24...    99  1e-31
emb|CAA65991.1| methionine sulfoxide reductase [Arabidopsis thal...    96  1e-30
sp|Q9SEC2|MSRA_LACSA Peptide methionine sulfoxide reductase (Pro...    92  3e-29

>gb|AAM65092.1| protein-methionine-S-oxide reductase [Arabidopsis thaliana]
          Length = 258

 Score = 99.0 bits (245), Expect(2) = 1e-31
 Identities = 51/124 (41%), Positives = 67/124 (53%), Gaps = 11/124 (8%)
 Frame = +3

Query: 36  KPGAARPNILRRASRTHSVAAMGFFNFGSLFSKEQCKLAP-----AQAPE------GLKL 182
           KP    P   RR    +       FN     S+ Q +  P     AQ P+      G + 
Sbjct: 34  KPICPFPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQADPSSAAIAQGPDDDVPSSGQQF 93

Query: 183 ATFAGGCFWGIELAYQRVPGVVATTVGYTGGADKNPNYDSVCSGRSGHAEAIQCTYDPKQ 362
           A F  GCFWG+ELAYQRVPGV  T VGY+ G   NP+Y+ VC+G +GH E ++  YDPK+
Sbjct: 94  AQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKE 153

Query: 363 CSYD 374
           CS++
Sbjct: 154 CSFE 157

 Score = 58.9 bits (141), Expect(2) = 1e-31
 Identities = 31/51 (60%), Positives = 35/51 (67%), Gaps = 1/51 (1%)
 Frame = +1

Query: 355 PSNAATTALLDTFFARVDPTTLNRQGNDRGTQYRSAIYYH-DEQ*RAAAAA 504
           P   +  +LLD F+ R DPTTLNRQG D GTQYRS IYY+ DEQ R A  A
Sbjct: 151 PKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREA 201

>ref|NP_194243.1| protein-methionine-S-oxide reductase [Arabidopsis thaliana]
           gi|12644314|sp|P54150|MSRA_ARATH Peptide methionine
           sulfoxide reductase (Protein-methionine-S-oxide
           reductase) (Peptide Met(O) reductase)
           gi|7446680|pir||T05534 protein-methionine-S-oxide
           reductase (EC 1.8.4.6) - Arabidopsis thaliana
           gi|4455256|emb|CAB36755.1| protein-methionine-S-oxide
           reductase [Arabidopsis thaliana]
           gi|7269363|emb|CAB79422.1| protein-methionine-S-oxide
           reductase [Arabidopsis thaliana]
          Length = 258

 Score = 99.0 bits (245), Expect(2) = 1e-31
 Identities = 51/124 (41%), Positives = 67/124 (53%), Gaps = 11/124 (8%)
 Frame = +3

Query: 36  KPGAARPNILRRASRTHSVAAMGFFNFGSLFSKEQCKLAP-----AQAPE------GLKL 182
           KP    P   RR    +       FN     S+ Q +  P     AQ P+      G + 
Sbjct: 34  KPICPFPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQADPSSAAIAQGPDDDVPSSGQQF 93

Query: 183 ATFAGGCFWGIELAYQRVPGVVATTVGYTGGADKNPNYDSVCSGRSGHAEAIQCTYDPKQ 362
           A F  GCFWG+ELAYQRVPGV  T VGY+ G   NP+Y+ VC+G +GH E ++  YDPK+
Sbjct: 94  AQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKE 153

Query: 363 CSYD 374
           CS++
Sbjct: 154 CSFE 157

 Score = 58.9 bits (141), Expect(2) = 1e-31
 Identities = 31/51 (60%), Positives = 35/51 (67%), Gaps = 1/51 (1%)
 Frame = +1

Query: 355 PSNAATTALLDTFFARVDPTTLNRQGNDRGTQYRSAIYYH-DEQ*RAAAAA 504
           P   +  +LLD F+ R DPTTLNRQG D GTQYRS IYY+ DEQ R A  A
Sbjct: 151 PKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREA 201

>gb|AAK83645.1| AT4g25130/F13M23_270 [Arabidopsis thaliana]
           gi|24111327|gb|AAN46787.1| At4g25130/F13M23_270
           [Arabidopsis thaliana]
          Length = 258

 Score = 99.0 bits (245), Expect(2) = 1e-31
 Identities = 51/124 (41%), Positives = 67/124 (53%), Gaps = 11/124 (8%)
 Frame = +3

Query: 36  KPGAARPNILRRASRTHSVAAMGFFNFGSLFSKEQCKLAP-----AQAPE------GLKL 182
           KP    P   RR    +       FN     S+ Q +  P     AQ P+      G + 
Sbjct: 34  KPICPFPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQADPSSAAIAQGPDDDVPSSGQQF 93

Query: 183 ATFAGGCFWGIELAYQRVPGVVATTVGYTGGADKNPNYDSVCSGRSGHAEAIQCTYDPKQ 362
           A F  GCFWG+ELAYQRVPGV  T VGY+ G   NP+Y+ VC+G +GH E ++  YDPK+
Sbjct: 94  AQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKE 153

Query: 363 CSYD 374
           CS++
Sbjct: 154 CSFE 157

 Score = 58.9 bits (141), Expect(2) = 1e-31
 Identities = 31/51 (60%), Positives = 35/51 (67%), Gaps = 1/51 (1%)
 Frame = +1

Query: 355 PSNAATTALLDTFFARVDPTTLNRQGNDRGTQYRSAIYYH-DEQ*RAAAAA 504
           P   +  +LLD F+ R DPTTLNRQG D GTQYRS IYY+ DEQ R A  A
Sbjct: 151 PKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQDRIAREA 201

>emb|CAA65991.1| methionine sulfoxide reductase [Arabidopsis thaliana]
          Length = 258

 Score = 95.5 bits (236), Expect(2) = 1e-30
 Identities = 50/124 (40%), Positives = 66/124 (52%), Gaps = 11/124 (8%)
 Frame = +3

Query: 36  KPGAARPNILRRASRTHSVAAMGFFNFGSLFSKEQCKLAP-----AQAPE------GLKL 182
           KP    P   RR    +       FN     S+ Q +  P     AQ P+      G + 
Sbjct: 34  KPICPFPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQADPSSAAIAQGPDDDVPSSGQQF 93

Query: 183 ATFAGGCFWGIELAYQRVPGVVATTVGYTGGADKNPNYDSVCSGRSGHAEAIQCTYDPKQ 362
           A F  GCFWG+ELAYQRVPGV  T VGY+ G   NP+ + VC+G +GH E ++  YDPK+
Sbjct: 94  AQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSSEDVCTGTTGHNEVVRVQYDPKE 153

Query: 363 CSYD 374
           CS++
Sbjct: 154 CSFE 157

 Score = 58.9 bits (141), Expect(2) = 1e-30
 Identities = 31/51 (60%), Positives = 35/51 (67%), Gaps = 1/51 (1%)
 Frame = +1

Query: 355 PSNAATTALLDTFFARVDPTTLNRQGNDRGTQYRSAIYYH-DEQ*RAAAAA 504
           P   +  +LLD F+ R DPTTLNRQG D GTQYRS IYY+ DEQ R A  A
Sbjct: 151 PKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREA 201

>sp|Q9SEC2|MSRA_LACSA Peptide methionine sulfoxide reductase (Protein-methionine-S-oxide
           reductase) (Peptide Met(O) reductase)
           gi|6635341|gb|AAF19789.1|AF162204_1 methionine sulfoxide
           reductase [Lactuca sativa]
          Length = 259

 Score = 92.4 bits (228), Expect(2) = 3e-29
 Identities = 41/79 (51%), Positives = 52/79 (64%), Gaps = 6/79 (7%)
 Frame = +3

Query: 156 AQAPE------GLKLATFAGGCFWGIELAYQRVPGVVATTVGYTGGADKNPNYDSVCSGR 317
           AQ P+      G + A F  GCFWG+ELA+QRVPGV  T VGYT G   NP Y+ +CSG 
Sbjct: 80  AQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVSKTEVGYTQGFLHNPTYNDICSGT 139

Query: 318 SGHAEAIQCTYDPKQCSYD 374
           + H+E ++  YDPK CS+D
Sbjct: 140 TNHSEVVRVQYDPKACSFD 158

 Score = 57.8 bits (138), Expect(2) = 3e-29
 Identities = 31/52 (59%), Positives = 36/52 (68%), Gaps = 1/52 (1%)
 Frame = +1

Query: 355 PSNAATTALLDTFFARVDPTTLNRQGNDRGTQYRSAIY-YHDEQ*RAAAAAR 507
           P   +  +LLD F+ R DPTTLNRQGND GTQYRS IY Y  EQ +AA  A+
Sbjct: 152 PKACSFDSLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAIEAK 203



EST assemble image


clone accession position
1 LC086c01_r AV625030 1 588
2 LC002a01_r AV618966 106 616
3 LC003b07_r AV619056 121 546
4 CL11e07_r AV393790 122 519




Chlamydomonas reinhardtii
Kazusa DNA Research Institute