KCC000221A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000221A_C01 KCC000221A_c01
ggtcattcaaagccttcagtccatagtgcgcccgacactgcgcgtgcaattatagtcggg
ttattgcgtgccagtcgctaAATTTCGACCATGGCAGAAGCATCTGCACCGCCGATAGCG
GTATCTGCACTCAGGCGGGAGCTGGACTTTGTCAAGTCCCTGCTCAAGTCGGGTCGCAGC
ATCGAGGAAATGGTTGCGGCCGCGAATGCTGCCGCACGCGTGGCAAGCCGCGCGTCCTTT
GAGGCGAAGACGGCGACACAGAAAGGGGGCACGGAACTGACCATCCGGGGTCTGCCCACG
GGCCCGGACTGGGACTGGCGCGGACTCAAGCGCTGGCTGCAGAGCCGCGGCCTGGGCCAG
CGCGCCATCAAGTACAGCGACAAGGACCCCGAGTCGTCGGAGGCGGTGGTGCGCTTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000221A_C01 KCC000221A_c01
         (417 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB93301.1| B1045F02.20 [Oryza sativa (japonica cultivar-gro...    42  0.003
gb|AAH58074.1| WISP2 protein [Homo sapiens]                            40  0.010
ref|NP_114124.1| BTE-binding protein 4; dopamine receptor regula...    39  0.017
gb|AAA16422.1| uracil-DNA glycosylase                                  38  0.029
ref|XP_344036.1| similar to basic proline-rich protein [Rattus n...    37  0.064

>dbj|BAB93301.1| B1045F02.20 [Oryza sativa (japonica cultivar-group)]
          Length = 426

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 13/69 (18%)
 Frame = +2

Query: 242 RRRRRHRKGARN*PS--------GVCPRARTGTGADSSAGCRAAAWASAPSSTATRTPS- 394
           R+R+R  +GAR  P+         V PRAR+G G + S   R AA A AP + A  T   
Sbjct: 107 RQRQRRPRGARRLPARARSEAVAAVAPRARSGNGNNGSGARREAAAAVAPLTRAVATAHA 166

Query: 395 ----RRRRW 409
               RRRRW
Sbjct: 167 QGARRRRRW 175

>gb|AAH58074.1| WISP2 protein [Homo sapiens]
          Length = 218

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 18/35 (51%), Positives = 20/35 (56%)
 Frame = -3

Query: 364 RAGPGRGSAASA*VRASPSPGPWADPGWSVPCPLS 260
           RAG G G+         P PGPWAD  WSVP PL+
Sbjct: 169 RAGLGMGTRCPPSPAGGPVPGPWADGRWSVPRPLA 203

>ref|NP_114124.1| BTE-binding protein 4; dopamine receptor regulating factor; basic
           transcription element binding protein 4 [Homo sapiens]
           gi|17366682|sp|Q9BXK1|BTE4_HUMAN Transcription factor
           BTEB4 (Basic transcription element binding-protein 4)
           (BTE-binding protein 4) (Krueppel-like factor 16) (Novel
           Sp1-like zinc finger transcription factor 2)
           (Transcription factor NSLP2)
           gi|13195441|gb|AAK15698.1|AF327440_1 BTE-binding protein
           4 [Homo sapiens]
          Length = 252

 Score = 38.9 bits (89), Expect = 0.017
 Identities = 29/83 (34%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
 Frame = -3

Query: 409 PPPPTTRGPCRCT*WRAGPGRGSAA---SA*VRASPSPGPWADPGWSVPCPLSVSPSSPQ 239
           PPPP   GP        GPG  +A    +A + A    GP A PG + P   S + SSP 
Sbjct: 60  PPPPAASGP--------GPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAASSPS 111

Query: 238 RTRG---LPRVRQHSRPQPFPRC 179
             R     P     S   PFP C
Sbjct: 112 SGRAPGAAPSAAAKSHRCPFPDC 134

>gb|AAA16422.1| uracil-DNA glycosylase
          Length = 339

 Score = 38.1 bits (87), Expect = 0.029
 Identities = 34/94 (36%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
 Frame = -2

Query: 362 RWPRPRLCSQRLSPRQS---QSGPVGRPRMVSSVPPFCVAVFASKDARLATRAA-AFAAA 195
           RWP  R   +R +  +       P G P  V  V P   A  AS  A  A  AA A A A
Sbjct: 10  RWPCTRTPCRRCAIMEGPPPSKRPCGLPPGVRLVVPAAAAASASNAATAAAAAAPAGAGA 69

Query: 194 TISSMLRPDLSRDLTKSSSRLSADTAIGGADASA 93
             S   RP  +    K +   SA T   GADASA
Sbjct: 70  GASKPARPPAAARPAKGTPAASAATTATGADASA 103

>ref|XP_344036.1| similar to basic proline-rich protein [Rattus norvegicus]
          Length = 757

 Score = 37.0 bits (84), Expect = 0.064
 Identities = 30/85 (35%), Positives = 40/85 (46%), Gaps = 1/85 (1%)
 Frame = -3

Query: 388 GPCRCT*WRAGPGRGSAASA*VRASPSPGPWADPGWSVPCPLSVSPS-SPQRTRGLPRVR 212
           GP RCT    GP R + +   +R +PSPGP    G   P PL  +PS  P R    P + 
Sbjct: 441 GPLRCTP-SPGPLRCTPSPGPLRCTPSPGPLR--GTPSPGPLRCTPSPGPVRYTPSPGLL 497

Query: 211 QHSRPQPFPRCCDPT*AGT*QSPAP 137
           +   P P P  C P+      +P+P
Sbjct: 498 R-GTPSPGPLRCTPSPGPLRYTPSP 521

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = -3

Query: 388 GPCRCT*WRAGPGRGSAASA*VRASPSPGPW-ADPGWSVPCPLSVSPS-SPQRTRGLPRV 215
           GP RCT    GP RG+ +   +R +PSPGP    P    P PL  +PS  P R    P  
Sbjct: 522 GPLRCTP-SPGPLRGTPSPGPLRYTPSPGPLRCTPS---PGPLRCTPSPGPLRYTPSPGP 577

Query: 214 RQHSRPQPFPRCCDPT*AGT*QSPAP 137
            +   P P P  C P+      +P+P
Sbjct: 578 LR-CTPSPGPLRCTPSPGPLRGTPSP 602

 Score = 33.9 bits (76), Expect = 0.54
 Identities = 30/87 (34%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
 Frame = -3

Query: 388 GPCRCT*WRAGPGRGSAASA*VRASPSPGPWADPGWSVPCP--LSVSPS-SPQRTRGLPR 218
           GP RCT    GP RG+ +   +R +PSPGP        P P  L  +PS  P R    P 
Sbjct: 585 GPLRCTP-SPGPLRGTPSPGPLRCTPSPGPVR----YTPSPGLLRGTPSPGPLRCTPSPG 639

Query: 217 VRQHSRPQPFPRCCDPT*AGT*QSPAP 137
             +++ P P P  C P+      +P+P
Sbjct: 640 PLRYT-PSPGPLRCTPSPGPLRYTPSP 665

 Score = 33.5 bits (75), Expect = 0.71
 Identities = 30/87 (34%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
 Frame = -3

Query: 388 GPCRCT*WRAGPGRGSAASA*VRASPSPGPWADPGWSVPCP--LSVSPS-SPQRTRGLPR 218
           GP RCT    GP RG+ +   +R +PSPGP        P P  L  +PS  P R    P 
Sbjct: 459 GPLRCTP-SPGPLRGTPSPGPLRCTPSPGPVR----YTPSPGLLRGTPSPGPLRCTPSPG 513

Query: 217 VRQHSRPQPFPRCCDPT*AGT*QSPAP 137
             +++ P P P  C P+      +P+P
Sbjct: 514 PLRYT-PSPGPLRCTPSPGPLRGTPSP 539

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 30/93 (32%), Positives = 40/93 (42%), Gaps = 9/93 (9%)
 Frame = -3

Query: 388 GPCRCT*WRA--------GPGRGSAASA*VRASPSPGPWADPGWSVPCPLSVSPS-SPQR 236
           GP RCT            GP R + +   +R +PSPGP    G   P PL  +PS  P R
Sbjct: 558 GPLRCTPSPGPLRYTPSPGPLRCTPSPGPLRCTPSPGPLR--GTPSPGPLRCTPSPGPVR 615

Query: 235 TRGLPRVRQHSRPQPFPRCCDPT*AGT*QSPAP 137
               P + +   P P P  C P+      +P+P
Sbjct: 616 YTPSPGLLR-GTPSPGPLRCTPSPGPLRYTPSP 647

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -3

Query: 388 GPCRCT*WRAGPGRGSAASA*VRASPSPGPWADPGWSVPCPLSVSPS-SPQRTRGLPRVR 212
           GP R T    GP RG+ +   +R +PSPGP    G   P PL  +PS  P R    P   
Sbjct: 675 GPLRYTP-SPGPLRGTPSPGPLRYTPSPGPLR--GTPSPGPLRYTPSPGPLRCTPSPGPL 731

Query: 211 QHSRPQPFPRCCDPT 167
           +   P P P  C P+
Sbjct: 732 R-CTPSPGPLRCTPS 745

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
 Frame = -3

Query: 388 GPCRCT*WRA--------GPGRGSAASA*VRASPSPGPWADPGWSVPCPLSVSPSSPQRT 233
           GP RCT            GP R + +   +R +PSPGP    G   P PL  +P SP   
Sbjct: 648 GPLRCTPSPGPLRYTPSPGPLRYTPSPGPLRYTPSPGPLR--GTPSPGPLRYTP-SPGPL 704

Query: 232 RGLPRVRQ-HSRPQPFPRCCDPT*AGT*QSPAP 137
           RG P        P P P  C P+      +P+P
Sbjct: 705 RGTPSPGPLRYTPSPGPLRCTPSPGPLRCTPSP 737

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = -3

Query: 388 GPCRCT*WRAGPGRGSAASA*VRASPSPGPWADPGWSVPCPLSVSPSSPQRTRGLPRVRQ 209
           GP R T    GP R + +   VR +PSPGP        P PL  +P SP   RG P    
Sbjct: 198 GPLRYTP-SPGPLRSTPSPGPVRYTPSPGPLRYT--PSPGPLRYTP-SPGPLRGTPSPGP 253

Query: 208 -HSRPQPFPRCCDPT*AGT*QSPAP 137
               P P P  C P+      +P+P
Sbjct: 254 LRYTPSPGPLRCTPSPGPLRYTPSP 278

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 30/84 (35%), Positives = 39/84 (45%), Gaps = 1/84 (1%)
 Frame = -3

Query: 415 SAPPPPTTRGPCRCT*WRAGPGRGSAASA*VRASPSPGPWADPGWSVPCPLSVSPS-SPQ 239
           S P P    GP R T    GP R + +   +R +PSPGP    G   P PL  +PS  P 
Sbjct: 211 STPSP----GPVRYTP-SPGPLRYTPSPGPLRYTPSPGPLR--GTPSPGPLRYTPSPGPL 263

Query: 238 RTRGLPRVRQHSRPQPFPRCCDPT 167
           R    P   +++ P P P  C P+
Sbjct: 264 RCTPSPGPLRYT-PSPGPLRCTPS 286

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -3

Query: 388 GPCRCT*WRAGPGRGSAASA*VRASPSPGPWADPGWSVPCPLSVSPS-SPQRTRGLPRVR 212
           GP R T    GP RG+ +   +R  PSPGP        P PL  +PS  P R    P   
Sbjct: 351 GPLRYTP-SPGPLRGTPSPGPLRYRPSPGPLRYR--PSPGPLRYTPSPGPLRYTPSPGPL 407

Query: 211 QHSRPQPFPRCCDPT*AGT*QSPAP 137
           +++ P P P  C P+      +P+P
Sbjct: 408 RYT-PSPGPLRCTPSPGPLRYTPSP 431

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
 Frame = -3

Query: 388 GPCRCT*WRA--------GPGRGSAASA*VRASPSPGPW-ADPGWSVPCPLSVSPSSPQR 236
           GP RCT            GP R + +   +R +PSPGP    P    P PL  +P SP  
Sbjct: 414 GPLRCTPSPGPLRYTPSPGPLRYTPSPGPLRCTPSPGPLRCTPS---PGPLRCTP-SPGP 469

Query: 235 TRGLPRVRQHSRPQPFPRCCDPT*AGT*QSPAP 137
            RG         P P P  C P+      +P+P
Sbjct: 470 LRG--------TPSPGPLRCTPSPGPVRYTPSP 494



EST assemble image


clone accession position
1 HCL067e02_r AV643318 1 388
2 CL11d03_r AV393784 132 417




Chlamydomonas reinhardtii
Kazusa DNA Research Institute