Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000220A_C01 KCC000220A_c01
(578 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM94957.1| reverse transcriptase [Volvox carteri f. nagarien... 41 4e-05
dbj|BAB15673.1| unnamed protein product [Homo sapiens] 37 0.26
ref|NP_725338.1| short stop CG18076-PC [Drosophila melanogaster]... 36 0.44
gb|AAF24343.1|AF200425_1 Short stop/Kakapo long isoform [Drosoph... 36 0.44
ref|NP_725337.1| short stop CG18076-PE [Drosophila melanogaster]... 36 0.44
>gb|AAM94957.1| reverse transcriptase [Volvox carteri f. nagariensis]
Length = 829
Score = 40.8 bits (94), Expect(2) = 4e-05
Identities = 20/43 (46%), Positives = 26/43 (59%)
Frame = +1
Query: 13 VNAPFDEKGGVVLKVADKRVSCVTIVPVWPVV*VSKLSRLPER 141
+N PF V+ KVA++R CV I+PVWP V+ L LP R
Sbjct: 748 INPPFSAVARVLRKVAEERPDCVLILPVWPRAWVAILRTLPIR 790
Score = 27.7 bits (60), Expect(2) = 4e-05
Identities = 14/26 (53%), Positives = 16/26 (60%), Gaps = 2/26 (7%)
Frame = +2
Query: 167 VPGRQVP--ANPRPEAPHYAVEAVYV 238
+PG QVP A P P Y V+AVYV
Sbjct: 802 IPGPQVPNAAKRGPMTPRYRVQAVYV 827
>dbj|BAB15673.1| unnamed protein product [Homo sapiens]
Length = 155
Score = 36.6 bits (83), Expect = 0.26
Identities = 42/149 (28%), Positives = 52/149 (34%), Gaps = 10/149 (6%)
Frame = -1
Query: 479 GCLLGISHRTAHCRAFQSP*---------VLKLKCSSPYQLTLSGLHRSSRHQPQHASVQ 327
G LL S R R +P + L C+ P RS R H
Sbjct: 8 GSLLSASSRQCRRRGLAAPCPGCGPGAQSAMSLACAPP---------RSVRAPVMHPQGS 58
Query: 326 HTQRHRAGGSQRTFSGPCTTPETLQCLRSS-RTPPPPHSAELPAAGWPALVCPALACLTQ 150
+ GG Q T PCT PE S+ TP E + L+ PAL CL
Sbjct: 59 CNRGPHTGGLQTTEMHPCTLPEARSPKASAGLTPSGVSEGEFHSIRSQLLLAPALLCLW- 117
Query: 149 RLNRSGSRLSLLTHTTGHTGTMVTQLTRL 63
S L LL+H T+V + T L
Sbjct: 118 ---TLQSTLPLLSHGFSLLRTLVIEFTAL 143
>ref|NP_725338.1| short stop CG18076-PC [Drosophila melanogaster]
gi|21627204|gb|AAM68562.1| CG18076-PC [Drosophila
melanogaster]
Length = 5160
Score = 35.8 bits (81), Expect = 0.44
Identities = 42/164 (25%), Positives = 64/164 (38%), Gaps = 4/164 (2%)
Frame = -1
Query: 482 RGCLLGISHRTAHCRAFQSP*VLKLKCSSPYQLTLS-GLHR--SSRHQPQHASVQHTQRH 312
+G ++ + R+ P L S+P L+ + G H S R+ P+ + T+
Sbjct: 4934 QGPIIKVRERSVRSIPMSRPSRSSLSASTPDSLSDNEGSHGGPSGRYTPRKVTYTSTRTG 4993
Query: 311 RAGGSQRTFSGPCTTPETLQCLRSSRTPPPPHSAELPAAGWPALVCPALACLTQRLNRSG 132
G R S P + P + R PP H + L L + +
Sbjct: 4994 LTPGGSRAGSKPNSRPLS----RQGSKPPSRHGSTLS--------------LDSTDDHTP 5035
Query: 131 SRLSLLTHTTGHTGTMVT-QLTRLSATFSTTPPFSSNGALTTTR 3
SR+ +TG T + T + RLS T +TTP NG T TR
Sbjct: 5036 SRIPQRKPSTGSTASGTTPRPARLSVTTTTTPGSRLNGTSTITR 5079
>gb|AAF24343.1|AF200425_1 Short stop/Kakapo long isoform [Drosophila melanogaster]
Length = 5201
Score = 35.8 bits (81), Expect = 0.44
Identities = 42/164 (25%), Positives = 64/164 (38%), Gaps = 4/164 (2%)
Frame = -1
Query: 482 RGCLLGISHRTAHCRAFQSP*VLKLKCSSPYQLTLS-GLHR--SSRHQPQHASVQHTQRH 312
+G ++ + R+ P L S+P L+ + G H S R+ P+ + T+
Sbjct: 4975 QGPIIKVRERSVRSIPMSRPSRSSLSASTPDSLSDNEGSHGGPSGRYTPRKVTYTSTRTG 5034
Query: 311 RAGGSQRTFSGPCTTPETLQCLRSSRTPPPPHSAELPAAGWPALVCPALACLTQRLNRSG 132
G R S P + P + R PP H + L L + +
Sbjct: 5035 LTPGGSRAGSKPNSRPLS----RQGSKPPSRHGSTLS--------------LDSTDDHTP 5076
Query: 131 SRLSLLTHTTGHTGTMVT-QLTRLSATFSTTPPFSSNGALTTTR 3
SR+ +TG T + T + RLS T +TTP NG T TR
Sbjct: 5077 SRIPQRKPSTGSTASGTTPRPARLSVTTTTTPGSRLNGTSTITR 5120
>ref|NP_725337.1| short stop CG18076-PE [Drosophila melanogaster]
gi|21627202|gb|AAM68561.1| CG18076-PE [Drosophila
melanogaster]
Length = 5201
Score = 35.8 bits (81), Expect = 0.44
Identities = 42/164 (25%), Positives = 64/164 (38%), Gaps = 4/164 (2%)
Frame = -1
Query: 482 RGCLLGISHRTAHCRAFQSP*VLKLKCSSPYQLTLS-GLHR--SSRHQPQHASVQHTQRH 312
+G ++ + R+ P L S+P L+ + G H S R+ P+ + T+
Sbjct: 4975 QGPIIKVRERSVRSIPMSRPSRSSLSASTPDSLSDNEGSHGGPSGRYTPRKVTYTSTRTG 5034
Query: 311 RAGGSQRTFSGPCTTPETLQCLRSSRTPPPPHSAELPAAGWPALVCPALACLTQRLNRSG 132
G R S P + P + R PP H + L L + +
Sbjct: 5035 LTPGGSRAGSKPNSRPLS----RQGSKPPSRHGSTLS--------------LDSTDDHTP 5076
Query: 131 SRLSLLTHTTGHTGTMVT-QLTRLSATFSTTPPFSSNGALTTTR 3
SR+ +TG T + T + RLS T +TTP NG T TR
Sbjct: 5077 SRIPQRKPSTGSTASGTTPRPARLSVTTTTTPGSRLNGTSTITR 5120
