Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000218A_C01 KCC000218A_c01
(910 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P49202|RS18_CHLRE 40S ribosomal protein S18 gi|1076216|pir||S... 308 1e-82
dbj|BAC24844.1| putative ribosomal protein S18 [Oryza sativa (ja... 250 3e-65
dbj|BAC24846.1| putative ribosomal protein S18 [Oryza sativa (ja... 246 3e-64
gb|AAM92708.1| putative ribosomal protein S18 [Triticum aestivum] 246 4e-64
ref|NP_173692.1| 40S ribosomal protein S18 (RPS18A) [Arabidopsis... 242 7e-63
>sp|P49202|RS18_CHLRE 40S ribosomal protein S18 gi|1076216|pir||S51145 ribosomal protein
S18.e, cytosolic - Chlamydomonas reinhardtii
gi|624957|emb|CAA58668.1| ribosomal protein S18
[Chlamydomonas reinhardtii] gi|1587084|prf||2205351A
ribosomal protein S18
Length = 153
Score = 308 bits (788), Expect = 1e-82
Identities = 151/153 (98%), Positives = 151/153 (98%)
Frame = +3
Query: 264 MGSLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKRAGEC 443
MGSLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRK AGEC
Sbjct: 1 MGSLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGEC 60
Query: 444 SADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRN 623
SADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIR
Sbjct: 61 SADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRG 120
Query: 624 HRGLRHYWGLRVRGQHTKTTGRAGKTVGVAKKK 722
HRGLRHYWGLRVRGQHTKTTGRAGKTVGVAKKK
Sbjct: 121 HRGLRHYWGLRVRGQHTKTTGRAGKTVGVAKKK 153
>dbj|BAC24844.1| putative ribosomal protein S18 [Oryza sativa (japonica
cultivar-group)] gi|28269440|gb|AAO37983.1| putative
ribosomal protein S18A [Oryza sativa (japonica
cultivar-group)]
Length = 152
Score = 250 bits (638), Expect = 3e-65
Identities = 113/151 (74%), Positives = 137/151 (89%)
Frame = +3
Query: 270 SLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKRAGECSA 449
SL+ G+DFQHILRLLNTNVDGK KIM+A+T+I+G+GRRFSN+ CKKA++D+ KRAGE +
Sbjct: 2 SLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRAGELTP 61
Query: 450 DELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRNHR 629
+ELER+M +VANPR +K+PDWFLNR+KD+K GRFSQ+ S+ LD +RDDLERLKKIRNHR
Sbjct: 62 EELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHR 121
Query: 630 GLRHYWGLRVRGQHTKTTGRAGKTVGVAKKK 722
GLRHYWGLRVRGQHTKTTGR GKTVGV+KK+
Sbjct: 122 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
>dbj|BAC24846.1| putative ribosomal protein S18 [Oryza sativa (japonica
cultivar-group)]
Length = 148
Score = 246 bits (629), Expect = 3e-64
Identities = 112/147 (76%), Positives = 134/147 (90%)
Frame = +3
Query: 282 GDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKRAGECSADELE 461
G+DFQHILRLLNTNVDGK KIM+A+T+I+GIGRRFSN+ CKKA++D+ KRAGE + +ELE
Sbjct: 2 GEDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELE 61
Query: 462 RMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRNHRGLRH 641
R+M +VANPR +K+PDWFLNR+KD+K GRFSQ+ S+ LD +RDDLERLKKIRNHRGLRH
Sbjct: 62 RLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRH 121
Query: 642 YWGLRVRGQHTKTTGRAGKTVGVAKKK 722
YWGLRVRGQHTKTTGR GKTVGV+KK+
Sbjct: 122 YWGLRVRGQHTKTTGRRGKTVGVSKKR 148
>gb|AAM92708.1| putative ribosomal protein S18 [Triticum aestivum]
Length = 152
Score = 246 bits (628), Expect = 4e-64
Identities = 109/151 (72%), Positives = 138/151 (91%)
Frame = +3
Query: 270 SLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKRAGECSA 449
SL+ G++FQHILR+LNTNVDGK KIM+A+T+I+G+GRRFSN+VCKKA++D+ KRAGE SA
Sbjct: 2 SLIAGEEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSA 61
Query: 450 DELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRNHR 629
+E++R+M +V NPR +K+PDWFLNR+KD+K GRFSQ+ S+ +D +RDDLERLKKIRNHR
Sbjct: 62 EEMDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHR 121
Query: 630 GLRHYWGLRVRGQHTKTTGRAGKTVGVAKKK 722
GLRHYWG+RVRGQHTKTTGR GKTVGV+KK+
Sbjct: 122 GLRHYWGVRVRGQHTKTTGRRGKTVGVSKKR 152
>ref|NP_173692.1| 40S ribosomal protein S18 (RPS18A) [Arabidopsis thaliana]
gi|15234790|ref|NP_192718.1| 40S ribosomal protein S18
(RPS18C) [Arabidopsis thaliana]
gi|18399100|ref|NP_564434.1| 40S ribosomal protein S18
(RPS18B) [Arabidopsis thaliana]
gi|464707|sp|P34788|RS18_ARATH 40S ribosomal protein S18
gi|480908|pir||S37496 ribosomal protein S18.A, cytosolic
- Arabidopsis thaliana gi|405613|emb|CAA80684.1|
ribosomal protein S18A [Arabidopsis thaliana]
gi|434343|emb|CAA82273.1| S18 ribosomal protein
[Arabidopsis thaliana] gi|434345|emb|CAA82274.1| S18
ribosomal protein [Arabidopsis thaliana]
gi|434906|emb|CAA82275.1| S18 ribosomal protein
[Arabidopsis thaliana] gi|2505871|emb|CAA72909.1|
ribosomal protein S18A [Arabidopsis thaliana]
gi|3287678|gb|AAC25506.1|AAC25506 Match to ribosomal S18
gene mRNA gb|Z28701, DNA gb|Z23165 from A. thaliana.
ESTs gb|T21121, gb|Z17755, gb|R64776 and gb|R30430 come
from this gene. [Arabidopsis thaliana]
gi|4538910|emb|CAB39647.1| S18.A ribosomal protein
[Arabidopsis thaliana] gi|7267675|emb|CAB78103.1| S18.A
ribosomal protein [Arabidopsis thaliana]
gi|10086474|gb|AAG12534.1|AC015446_15 ribosomal protein
S18 [Arabidopsis thaliana]
gi|10092450|gb|AAG12853.1|AC079286_10 40S ribosomal
protein S18; 25853-24673 [Arabidopsis thaliana]
gi|14334584|gb|AAK59471.1| putative ribosomal protein
S18 [Arabidopsis thaliana]
gi|14423408|gb|AAK62386.1|AF386941_1 S18.A ribosomal
protein [Arabidopsis thaliana]
gi|15724158|gb|AAL06471.1|AF411781_1 At1g22780/T22J18_5
[Arabidopsis thaliana] gi|17979113|gb|AAL47500.1|
putative ribosomal protein S18 [Arabidopsis thaliana]
gi|21555397|gb|AAM63849.1| ribosomal protein S18,
putative [Arabidopsis thaliana]
gi|21592452|gb|AAM64403.1| ribosomal protein S18,
putative [Arabidopsis thaliana]
gi|21593027|gb|AAM64976.1| ribosomal protein S18,
putative [Arabidopsis thaliana]
gi|30102858|gb|AAP21347.1| At4g09800 [Arabidopsis
thaliana]
Length = 152
Score = 242 bits (617), Expect = 7e-63
Identities = 112/151 (74%), Positives = 135/151 (89%)
Frame = +3
Query: 270 SLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKRAGECSA 449
SLV ++FQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ KRAGE SA
Sbjct: 2 SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61
Query: 450 DELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRNHR 629
E++ +M IVANPR +KIPDWFLNRQKD+K G++SQ+ S+ LD +RDDLERLKKIRNHR
Sbjct: 62 AEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 121
Query: 630 GLRHYWGLRVRGQHTKTTGRAGKTVGVAKKK 722
GLRHYWGLRVRGQHTKTTGR GKTVGV+KK+
Sbjct: 122 GLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
