KCC000209A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000209A_C01 KCC000209A_c01
cctTGACGCTTTGACACTAGGCCACTGCGTTTGAGCAGGTCTAAACGATGACGTGGCTTG
TGTCTACAGTGTGTTTTTAACGCAACTTGAATTTCCAACACGCATCCACTACCGTCCAGA
CTGATAAATACAAGCTAGCGAAAGCGGGGCCGCAAAATGCGGGCGTCCATAGACCGGCAA
TGCTGCGCTGCAGCCAGCAGCCCTGCCAGTGCTCGCTGCCCAATACTTGGTCTACTTTCT
AGAGGCCAGAAGCGATTGGGGTGGCGCCTCGGCGGTCACATAGCAAGTTCACCACACGCA
GAGCTGACGTCGCCAACCCCAGTTGCTGCGGGAGCAACGGCACGAGCAGCGGCGCCGACG
TGGAGGTCCACTGTAGATGAGGAGGCCGTGCTCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000209A_C01 KCC000209A_c01
         (395 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB60940.1| P0682B08.10 [Oryza sativa (japonica cultivar-gro...    34  0.56
ref|NP_760495.1| Pyruvate carboxylase [Vibrio vulnificus CMCP6] ...    34  0.56
ref|NP_071439.2| PP3111 protein [Homo sapiens] gi|37537229|gb|AA...    33  1.3
dbj|BAC95563.1| oxaloacetate decarboxylase, alpha subunit [Vibri...    32  1.6
dbj|BAB32932.1| P0013G02.8 [Oryza sativa (japonica cultivar-group)]    32  2.1

>dbj|BAB60940.1| P0682B08.10 [Oryza sativa (japonica cultivar-group)]
          Length = 239

 Score = 33.9 bits (76), Expect = 0.56
 Identities = 19/41 (46%), Positives = 23/41 (55%), Gaps = 9/41 (21%)
 Frame = +1

Query: 139 RKRGRKMRASIDRQ---------CCAAASSPASARCPILGL 234
           R+ GR +R S+DR          CC AASSPAS R P + L
Sbjct: 86  RRTGRAVRPSLDRMGVRGPREAHCCWAASSPASMRPPTVAL 126

>ref|NP_760495.1| Pyruvate carboxylase [Vibrio vulnificus CMCP6]
           gi|27361113|gb|AAO10022.1|AE016802_65 Pyruvate
           carboxylase [Vibrio vulnificus CMCP6]
          Length = 596

 Score = 33.9 bits (76), Expect = 0.56
 Identities = 18/38 (47%), Positives = 21/38 (54%)
 Frame = +1

Query: 277 HIASSPHAELTSPTPVAAGATARAAAPTWRSTVDEEAV 390
           H+   P  +LTS TP AA A+A  AAP      D EAV
Sbjct: 493 HVEVGPEGQLTSVTPAAAPASAPIAAPVSAVPSDAEAV 530

>ref|NP_071439.2| PP3111 protein [Homo sapiens] gi|37537229|gb|AAH17081.3| PP3111
           protein [Homo sapiens]
          Length = 363

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/65 (32%), Positives = 30/65 (45%), Gaps = 2/65 (3%)
 Frame = +1

Query: 145 RGRKMRASIDRQCCAAASSPASARCPILGLL--SRGQKRLGWRLGGHIASSPHAELTSPT 318
           +G +   S+ R CC   +S  +A CP  GLL  ++ +K L W+           EL  P 
Sbjct: 292 KGNRCVFSLCRGCCKKRASKETADCPGHGLLFKTKLEKSLAWK-------EAQPELQEPQ 344

Query: 319 PVAAG 333
           P A G
Sbjct: 345 PAAPG 349

>dbj|BAC95563.1| oxaloacetate decarboxylase, alpha subunit [Vibrio vulnificus YJ016]
          Length = 596

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 17/38 (44%), Positives = 20/38 (51%)
 Frame = +1

Query: 277 HIASSPHAELTSPTPVAAGATARAAAPTWRSTVDEEAV 390
           H+   P  +LTS TP AA A+   AAP      D EAV
Sbjct: 493 HVEVGPEGQLTSVTPAAAPASTPIAAPVAAVPSDAEAV 530

>dbj|BAB32932.1| P0013G02.8 [Oryza sativa (japonica cultivar-group)]
          Length = 463

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +1

Query: 181 CCAAASSPASARCPILGLLSRGQKRLGWRLGGHIASSPHAELTSPTP---VAAGATARAA 351
           C A +      R P++ L SR   RL WRL   +     A+    +P   +A  A+  + 
Sbjct: 83  CAARSDRNLLFRIPLVTLASRLSPRLSWRLANLLVLGQQAKTLGASPTTELATWASHWSK 142

Query: 352 APTWRSTV 375
            PTW   V
Sbjct: 143 MPTWPGMV 150



EST assemble image


clone accession position
1 HCL090e06_r AV644558 1 363
2 CL10f09_r AV393681 4 395




Chlamydomonas reinhardtii
Kazusa DNA Research Institute