Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000207A_C01 KCC000207A_c01
(308 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_332038.1| predicted protein [Neurospora crassa] gi|289203... 31 4.1
ref|NP_040803.1| E5 protein [Human papillomavirus type 5b] gi|13... 30 9.2
gb|AAP48608.1| minor structural protein [Human calicivirus SLV/c... 30 9.2
>ref|XP_332038.1| predicted protein [Neurospora crassa] gi|28920317|gb|EAA29689.1|
predicted protein [Neurospora crassa]
Length = 2295
Score = 31.2 bits (69), Expect = 4.1
Identities = 17/52 (32%), Positives = 24/52 (45%)
Frame = +3
Query: 6 VRLYQGVSSVPNASGAGRVPVPAPPLFRLSTP*TLKLVC*PRPSISTIHSYP 161
V +Y G ++ P +P P+ PL S+P PRP S +HS P
Sbjct: 603 VPVYVGKATEPRVDRYSPLPAPSSPLLSRSSPYRAYKSSQPRPRESLLHSVP 654
>ref|NP_040803.1| E5 protein [Human papillomavirus type 5b]
gi|137745|sp|P26551|VE5_HPV5B PROBABLE E5 PROTEIN
gi|73449|pir||W5WLB5 E5 protein - human papillomavirus
type 5b gi|222397|dbj|BAA14297.1| E5 protein [Human
papillomavirus type 5b]
Length = 168
Score = 30.0 bits (66), Expect = 9.2
Identities = 18/52 (34%), Positives = 25/52 (47%)
Frame = +3
Query: 18 QGVSSVPNASGAGRVPVPAPPLFRLSTP*TLKLVC*PRPSISTIHSYPAHIG 173
Q V + NA+ A +VP P P +S P L++ P P H P H+G
Sbjct: 28 QQVKEIANAAKAIKVPTPVP----VSVPVALQV---PNPHHLVHHQVPVHVG 72
>gb|AAP48608.1| minor structural protein [Human calicivirus SLV/cruise
ship/2000/USA]
Length = 166
Score = 30.0 bits (66), Expect = 9.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 106 VQGVLSRKRGGAGTGTLPAPEAFG 35
+QG LS + G G GT PAP FG
Sbjct: 121 MQGALSAFKTGTGVGTKPAPAGFG 144
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,517,586
Number of Sequences: 1537769
Number of extensions: 6604919
Number of successful extensions: 13953
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13950
length of database: 498,525,298
effective HSP length: 78
effective length of database: 378,579,316
effective search space used: 9085903584
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
