KCC000204A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000204A_C01 KCC000204A_c01
agcacagctacctagtcatgaagcatgagagtattaccaCAACAAGTTAGCTCACCGGTG
AAACTGCCCATCAGCCGGTCCCTGGTCGCAGCACGGATAACAGTCCTGGGCAGCGGTATG
CAGCAAGCAAAGCGTCAAAAGACAACTCAAGCTATTAACTCCGGCGCTGAGCCGGCCGCT
AGCGCAAAGGGCGGCATGGCCGAAGGTGCTGCCATCCGCAGTCCGCTGTTGGGGGACCAG
TCCAAGCTTCAGAGGAGCCAGAGGCCAACGCGCCCACCAACAGCGCTGCTGCGCAGGGGA
CATCCAGGTTCTGGCATGAAGAGAGGCGCTTCAAGGGCAGCGGCGAGCGGTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000204A_C01 KCC000204A_c01
         (353 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA77423.1| ORF2 [TT virus]                                        36  0.12
ref|NP_925333.1| hypothetical protein glr2387 [Gloeobacter viola...    35  0.27
ref|ZP_00091362.1| COG2192: Predicted carbamoyl transferase, Nod...    35  0.35
sp|Q9EQQ0|SU92_MOUSE Histone-lysine N-methyltransferase, H3 lysi...    34  0.46
ref|NP_073561.2| suppressor of variegation 3-9 homologue 2; Suv3...    34  0.46

>dbj|BAA77423.1| ORF2 [TT virus]
          Length = 109

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +2

Query: 68  PSAGPWSQHG*-----QSWAAVCSKQSVKRQLKLLTPALSRPLAQRAAWPKVLPSAVRCW 232
           P  GPW +        +S AA CS       L  L   L RP + +AA P+ LP A+R  
Sbjct: 36  PQNGPWLERNWYESVYRSHAAFCSCGDCAGHLSYLATNLGRPPSAQAA-PQQLPPAIRAL 94

Query: 233 GTSPSFRGARGQRA 274
              P+ +G  G RA
Sbjct: 95  PALPAPQGDSGNRA 108

>ref|NP_925333.1| hypothetical protein glr2387 [Gloeobacter violaceus]
           gi|35212955|dbj|BAC90328.1| glr2387 [Gloeobacter
           violaceus]
          Length = 417

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 29/102 (28%), Positives = 46/102 (44%), Gaps = 6/102 (5%)
 Frame = +1

Query: 28  RVLPQQVSSPVKLPISRSLVAARITVLGSGMQQAKRQKTTQAINSGAEPAASAKGGMAEG 207
           +VLP+ + +P  LP+       RI  L S M +   Q   ++     EPA+     MA+G
Sbjct: 129 QVLPEAIVTPDLLPLPELDKRERIASLESAMLKLTDQPRLRSGFMFVEPASGRYVAMADG 188

Query: 208 ------AAIRSPLLGDQSKLQRSQRPTRPPTALLRRGHPGSG 315
                 + I+ P+L +  +   S R     T +LR+ H G G
Sbjct: 189 ESFSAASVIKVPVLVEFLRQVDSGRLKLDDTLILRQEHKGGG 230

>ref|ZP_00091362.1| COG2192: Predicted carbamoyl transferase, NodU family [Azotobacter
           vinelandii]
          Length = 1081

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 25/74 (33%), Positives = 33/74 (43%)
 Frame = +1

Query: 115 GMQQAKRQKTTQAINSGAEPAASAKGGMAEGAAIRSPLLGDQSKLQRSQRPTRPPTALLR 294
           G  +A  + T  A+ +G   A  A GG A+G    +PL    ++L R  RP   P     
Sbjct: 207 GRARALHRGTAGALPAGQRRARPAAGGAAQGGCQGAPLA--PARLPRQARPRLHPVQRAA 264

Query: 295 RGHPGSGMKRGASR 336
           R H   G  RGA R
Sbjct: 265 RAH---GAARGAPR 275

>sp|Q9EQQ0|SU92_MOUSE Histone-lysine N-methyltransferase, H3 lysine-9 specific 2 (Histone
           H3-K9 methyltransferase 2) (H3-K9-HMTase 2) (Suppressor
           of variegation 3-9 homolog 2) (Su(var)3-9 homolog 2)
           gi|9956936|gb|AAG09134.1|AF149205_1 Su(var)3-9 homolog
           Suv39h2 [Mus musculus]
          Length = 477

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 21/62 (33%), Positives = 29/62 (45%)
 Frame = +1

Query: 166 AEPAASAKGGMAEGAAIRSPLLGDQSKLQRSQRPTRPPTALLRRGHPGSGMKRGASRAAA 345
           A   A A+G  A     R+P    + K +R+ R  R  T   RR  P +G +R  S+ A 
Sbjct: 2   ATARAKARGSEAGARCHRAPGPPPRPKARRTARRRRAETLTARRSRPSAGERRAGSQRAW 61

Query: 346 SG 351
           SG
Sbjct: 62  SG 63

>ref|NP_073561.2| suppressor of variegation 3-9 homologue 2; Suv39h histone
           methyltransferase [Mus musculus]
           gi|26350569|dbj|BAC38921.1| unnamed protein product [Mus
           musculus]
          Length = 477

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 21/62 (33%), Positives = 29/62 (45%)
 Frame = +1

Query: 166 AEPAASAKGGMAEGAAIRSPLLGDQSKLQRSQRPTRPPTALLRRGHPGSGMKRGASRAAA 345
           A   A A+G  A     R+P    + K +R+ R  R  T   RR  P +G +R  S+ A 
Sbjct: 2   AAARAKARGSEAGARCHRAPGPPPRPKARRTARRRRAETLTARRSRPSAGERRAGSQRAW 61

Query: 346 SG 351
           SG
Sbjct: 62  SG 63



EST assemble image


clone accession position
1 CL10c09_r AV393679 1 327
2 HCL014c04_r AV640320 40 353




Chlamydomonas reinhardtii
Kazusa DNA Research Institute