KCC000203A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000203A_C01 KCC000203A_c01
gaggGCACTCCTGAATAATGGACTCCTAGAGACGTTGATGCTCGGATCATAGCGGTCTTG
ATACACGTTGCTTGCCAGGCGGCTTGTAGAGCCAGCGCCAGGCGCTGGAACGACCTTTGC
TTCGCTGCAGTGGCCGCTCAGCAGCGGCTGTGGTGGCCATGGTAGACGGTGGTTCGCGTG
CTGCCTCTGGCCAGCTGGATGACTGGGCCGCAGGCGTCGCGGCTGACCTAGACCAGGGAG
AGGGCGACCGCGCAGGGGCGAGGCGACGACCTGCGCGCGACGCCAGCCCGGCGCCGGATG
CTCGCAAAGTGACAACGTTCACAAACAAAAAGCGCCCGGCATCGGACAGGGACAGCAGCC
CGGAGGAGGACGACGAGGAGCAGGCTCAGAAAGGCTCCCTCAAAGCGGATGGAACTCGCC
CCAAGCTTCCACGCCCCGACAAGAAGGAGGCATGCCCTCGCTGCAACAGCATGGACACCA
AATTCTGCTACTACAACAATTACAACATCAAGCAGCCCCGCTTTTACTGCAAGACGTGTC
AG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000203A_C01 KCC000203A_c01
         (542 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO72549.1| AOBP-like protein [Oryza sativa (japonica cultiva...    82  6e-15
gb|AAL84292.1|AC073556_9 putative zinc finger DNA-binding protei...    80  1e-14
pir||T09661 ascorbate oxidase promoter-binding protein AOBP - wi...    79  4e-14
dbj|BAA92506.1| unnamed protein product [Oryza sativa (japonica ...    78  7e-14
ref|NP_568567.1| Dof zinc finger protein [Arabidopsis thaliana] ...    78  9e-14

>gb|AAO72549.1| AOBP-like protein [Oryza sativa (japonica cultivar-group)]
           gi|34394527|dbj|BAC83814.1| putative ascorbate oxidase
           promoter-binding protein AOBP [Oryza sativa (japonica
           cultivar-group)]
          Length = 476

 Score = 81.6 bits (200), Expect = 6e-15
 Identities = 42/111 (37%), Positives = 57/111 (50%), Gaps = 5/111 (4%)
 Frame = +3

Query: 225 DLDQGEGDRAGARRRPARDASPAPDARKVTTFTNKKR-----PASDRDSSPEEDDEEQAQ 389
           D  +  GD   +  +P  D     D    ++F +        P++D  +  E   E    
Sbjct: 31  DSCEDTGDMRISEEKPCTDQELDADQMNSSSFNSSSECENQTPSNDEMTGSESKSEAAQT 90

Query: 390 KGSLKADGTRPKLPRPDKKEACPRCNSMDTKFCYYNNYNIKQPRFYCKTCQ 542
           +G   ++     L +PDK   CPRCNSMDTKFCYYNNYNI QPR +CK+CQ
Sbjct: 91  EGGGSSE--EKVLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQ 139

>gb|AAL84292.1|AC073556_9 putative zinc finger DNA-binding protein [Oryza sativa (japonica
           cultivar-group)] gi|29367351|gb|AAO72548.1| putative
           H-protein promoter binding factor-2a [Oryza sativa
           (japonica cultivar-group)]
          Length = 440

 Score = 80.5 bits (197), Expect = 1e-14
 Identities = 43/111 (38%), Positives = 59/111 (52%)
 Frame = +3

Query: 210 AGVAADLDQGEGDRAGARRRPARDASPAPDARKVTTFTNKKRPASDRDSSPEEDDEEQAQ 389
           A  A D+D+       +   P    +   D+   T+   +       DSS +++  E  Q
Sbjct: 31  ACAAGDVDKDLQHSGSSTTEPKTQENTVQDS---TSPPPQPEVVDTEDSSADKNSSENQQ 87

Query: 390 KGSLKADGTRPKLPRPDKKEACPRCNSMDTKFCYYNNYNIKQPRFYCKTCQ 542
           +    A+  + KL +PDK   CPRC+SMDTKFCYYNNYNI QPR +CK CQ
Sbjct: 88  QQGDTAN-QKEKLKKPDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQ 137

>pir||T09661 ascorbate oxidase promoter-binding protein AOBP - winter squash
           gi|1669341|dbj|BAA08094.1| AOBP (ascorbate oxidase
           promoter-binding protein) [Cucurbita maxima]
          Length = 380

 Score = 79.0 bits (193), Expect = 4e-14
 Identities = 34/65 (52%), Positives = 45/65 (68%), Gaps = 3/65 (4%)
 Frame = +3

Query: 357 SPEEDDE---EQAQKGSLKADGTRPKLPRPDKKEACPRCNSMDTKFCYYNNYNIKQPRFY 527
           S +E+D+    + +K    A  ++ KL +PDK   CPRCNSM+TKFCYYNNYN+ QPR +
Sbjct: 7   STDENDKLATRKTEKEQNDAPNSKEKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHF 66

Query: 528 CKTCQ 542
           CK CQ
Sbjct: 67  CKACQ 71

>dbj|BAA92506.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
          Length = 420

 Score = 78.2 bits (191), Expect = 7e-14
 Identities = 32/58 (55%), Positives = 40/58 (68%)
 Frame = +3

Query: 369 DDEEQAQKGSLKADGTRPKLPRPDKKEACPRCNSMDTKFCYYNNYNIKQPRFYCKTCQ 542
           D +++ +K +    G    L +PDK   CPRCNSMDTKFCYYNNYN+ QPR +CK CQ
Sbjct: 11  DSKDENEKTANDESGQDKVLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQ 68

>ref|NP_568567.1| Dof zinc finger protein [Arabidopsis thaliana]
           gi|30693448|ref|NP_851106.1| Dof zinc finger protein
           [Arabidopsis thaliana]
          Length = 457

 Score = 77.8 bits (190), Expect = 9e-14
 Identities = 41/107 (38%), Positives = 59/107 (54%), Gaps = 4/107 (3%)
 Frame = +3

Query: 234 QGEGDRAGARRRPARDASPAPDARKVTTFTNKKRPASDRDSSPEEDDEEQAQKGSLKADG 413
           + E D+   +    ++ S   ++  VTT T+            E+ +  +A K + ++ G
Sbjct: 72  ESETDKKEEKDSECQEESLRNESNDVTTTTS---------GITEKTETTKAAKTNEESGG 122

Query: 414 T----RPKLPRPDKKEACPRCNSMDTKFCYYNNYNIKQPRFYCKTCQ 542
           T      KL +PDK   CPRCNSM+TKFCYYNNYN+ QPR +CK CQ
Sbjct: 123 TACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQ 169



EST assemble image


clone accession position
1 HCL082g12_r AV644146 1 463
2 CL66h03_r AV396764 4 485
3 CL12f04_r AV393848 22 542
4 CL25a01_r AV394513 24 450
5 CL24g09_r AV394418 38 543
6 CL10b06_r AV393659 41 540




Chlamydomonas reinhardtii
Kazusa DNA Research Institute