KCC000190A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000190A_C01 KCC000190A_c01
CTGAGTACATCTGGGCGGATGGCAACGAGGGCAAGCCTGAGAAGGGCATGATCTTCAACG
AGATGCGCTCGAAGACCAAGTGCTTCGAGGCCCCCCTGGGCCTGGACGCCTCGGAGTACC
CCGACTGGTCGTTCGATGGCTCGTCCACCGGCCAGGCTGAGGGCAACAACTCGGACTGCA
TCCTGCGCCCCGTGCGCGTGGTGACCGACCCCATCCGCGGTGCCCCCCACGTGCTGGTGA
TGTGCGAGGTGTTCGCCCCCGATGGCAAGCCCCACTCCACCAACACCCGCGCCAAGCTCC
GCGAGATCATTGACGACAAGGTCACTGCCGAGGACTGCTGGTACGGCTTCGAGCAGGAGT
ACACCATGCTGGCCAAGACCTCTGGCCACATCTACGGCTGGCCCGCTGGCGGCTTCCCTG
CTCCCCAGGGCCCCTTCTACTGCGGTGTGGGCGCTGAGTCCGCCTTCGGCCGCCCCCTGG
CTGAGGCCCACATGGAGGCCTGCATGAAGGCCGGTCTGGTCATCTCCGGCATCAACGCCG
AGGTGATGCCCGGCCAGTGGGAGTACCAGATCGGCCCCGTCGGCCCTCTGGCCCTGGGCG
ACGAGGTGATGCTGTCCCGCTGGCTGCTGCACCGCCTGGGCGAGGACTTCGGCATTGTGT
CGACCTTCAACCCCAAGCCCGTGCGCACCGGTGACTGGAACGGCACTGGCGCCCACACTA
ACTTCTCGACCAAGGGCATGCGCGTGCCCGGCGGCATGAAGGTGATCGAGGAGGCCGTGG
AGAAGCTGTCCAAGACCCACATCGAGCACATCACCCAGTACGGCATTGGCAACGAGGCGC
GCCTGACCGGCAAGCACGAGACCTGCGACATCAACACCTTCAAGCACGGTGTGGCTGACC
GCGGCTCTTCCATCCGCATTCCCCTGCCCGTCATGCTCAAGGGCTACGGCTACCTGGAGG
ACCGCCGCCCCGCTGCCAACGTCGACCCCTACACCGTGGCGCGCCTGCTGATCAAGACCG
TGCTCAAGGGCTAAATGCCCAGCATGCGCCAGCTAATAAGGGCAGCGATGAGGCGGAGGG
GTGCGTGACTCGGATGTGAGCTGTGATGAGGGGGTTGCTTCTATCGGCTAAGGGTGTGTG
TGTGTGTGTCTGTCTATGCTGGGCCGGGTATGTGGACCGGCGACCTGACGTTTGGAATGC
GTGCGTGTGCACACTGCCCGGTTGCAGTGTCTGCGCATGTATTTCCTGGCAACTCCAAAG
CCTACGGTTGAGCAAGTGACCTGTCTTTGGTTGGACGATTGTTCTGACACGTCGATTGCT
GCTAGGTTAACGGGAGGTTGCGGCGTGAGCCCTGCGACGAGCTGCGTAATACTATTTCCT
TGTACTTCTTCCTCGCGCGCCCTCCTGGGTGCTGACGCATTGTCAGGTTTGCTCAGGTCG
CCACATGTAATCGAACACGTCaacag


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000190A_C01 KCC000190A_c01
         (1466 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q42689|GLN2_CHLRE Glutamine synthetase, chloroplast precursor...   720  0.0
ref|NP_819537.1| glutamine synthetase [Coxiella burnetii RSA 493...   370  e-101
sp|P23712|GLNA_LACSA GLUTAMINE SYNTHETASE (GLUTAMATE--AMMONIA LI...   369  e-100
sp|P08282|GLN1_PEA Glutamine synthetase nodule isozyme (Glutamat...   368  e-100
gb|AAK08103.1|AF338444_1 glutamine synthetase [Avicennia marina]      367  e-100

>sp|Q42689|GLN2_CHLRE Glutamine synthetase, chloroplast precursor (Glutamate--ammonia
            ligase) (GS2) gi|7437923|pir||T08090 probable
            glutamate-ammonia ligase (EC 6.3.1.2), chloroplast -
            Chlamydomonas reinhardtii gi|1353878|gb|AAB01818.1|
            glutamine synthetase
          Length = 380

 Score =  720 bits (1859), Expect = 0.0
 Identities = 343/343 (100%), Positives = 343/343 (100%)
 Frame = +3

Query: 3    EYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCI 182
            EYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCI
Sbjct: 38   EYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCI 97

Query: 183  LRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIIDDKVTAEDCWYGFEQEY 362
            LRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIIDDKVTAEDCWYGFEQEY
Sbjct: 98   LRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIIDDKVTAEDCWYGFEQEY 157

Query: 363  TMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAE 542
            TMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAE
Sbjct: 158  TMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAE 217

Query: 543  VMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTN 722
            VMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTN
Sbjct: 218  VMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTN 277

Query: 723  FSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVADR 902
            FSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVADR
Sbjct: 278  FSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVADR 337

Query: 903  GSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTVLKG 1031
            GSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTVLKG
Sbjct: 338  GSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTVLKG 380

>ref|NP_819537.1| glutamine synthetase [Coxiella burnetii RSA 493]
            gi|29541108|gb|AAO90051.1| glutamine synthetase [Coxiella
            burnetii RSA 493]
          Length = 359

 Score =  370 bits (951), Expect = e-101
 Identities = 186/348 (53%), Positives = 235/348 (67%), Gaps = 9/348 (2%)
 Frame = +3

Query: 6    YIWADGNEGKPEKGMIFNEMRSKTKCFEAP-LGLDASEYPDWSFDGSSTGQAEGNNSDCI 182
            YIW DG +          ++RSK +  + P   +  +++P+W FDGSST QA G +SD I
Sbjct: 7    YIWMDGAQPT-------QKLRSKVRIVKHPERDITLADFPEWGFDGSSTYQATGKDSDLI 59

Query: 183  LRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIIDDKVTAEDCWYGFEQEY 362
            L+PV  V DPI G  + LV+CEV  PDG PH++NTRA+LR+I+ +     + W GFEQEY
Sbjct: 60   LQPVHFVKDPILGDGNYLVLCEVMNPDGSPHASNTRARLRQIMANGAAEHEPWIGFEQEY 119

Query: 363  TMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAE 542
            T+         GWP  G+PAPQGPFYCG+GA+  FGRPL E H  AC++A L+I G NAE
Sbjct: 120  TLFQGVQP--LGWPDRGYPAPQGPFYCGIGADEVFGRPLVEEHATACIEAELMIFGTNAE 177

Query: 543  VMPGQWEYQIGPVG-------PLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWN 701
            VMPGQWE+QIG  G       PL + D + L+RWLL+R+GED+GI +T  PKPV+ GDWN
Sbjct: 178  VMPGQWEFQIGYRGADDETPDPLTVSDHLWLARWLLYRIGEDYGITATLQPKPVK-GDWN 236

Query: 702  GTGAHTNFSTKGMRVPG-GMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINT 878
            G G HTNFSTK MR P  G + IE+A+E+LSK H  HI  YG G E RLTGKHET  I  
Sbjct: 237  GAGKHTNFSTKLMRDPATGREAIEQAIERLSKRHDAHIAVYGHGLEERLTGKHETAPITQ 296

Query: 879  FKHGVADRGSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTV 1022
            F  GV +RG+S+RIP  V  +G GYLEDRRP AN DPY VA +L++T+
Sbjct: 297  FSSGVGNRGASVRIPSAVASRGCGYLEDRRPGANADPYQVAAILLETI 344

>sp|P23712|GLNA_LACSA GLUTAMINE SYNTHETASE (GLUTAMATE--AMMONIA LIGASE) (GS(1))
            gi|19518|emb|CAA42689.1| glutamine synthetase [Lactuca
            sativa]
          Length = 358

 Score =  369 bits (946), Expect = e-100
 Identities = 177/342 (51%), Positives = 236/342 (68%), Gaps = 1/342 (0%)
 Frame = +3

Query: 3    EYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCI 182
            EYIW  G+      GM   ++RSK +    P+  D SE P W++DGSSTGQA G +S+ I
Sbjct: 22   EYIWIGGS------GM---DLRSKARTLSGPVS-DPSELPKWNYDGSSTGQAPGEDSEVI 71

Query: 183  LRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIIDD-KVTAEDCWYGFEQE 359
            + P  +  DP R   H+LVMC+ + P G+P  TN RA   +I  + +V  E  WYG EQE
Sbjct: 72   IYPQAIFKDPFRRGNHILVMCDAYTPAGEPIPTNKRAAAAKIFSNPEVEKEVTWYGIEQE 131

Query: 360  YTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINA 539
            YT+L K +    GWP GGFP PQGP+YCG+GA+ AFGR + +AH +AC+ AG+ ISGIN 
Sbjct: 132  YTLLQKDTNWPLGWPLGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGING 191

Query: 540  EVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHT 719
            EVMPGQWE+Q+GP   +A  D++ ++R++L R+ E +G+V +F+PKP+  GDWNG GAHT
Sbjct: 192  EVMPGQWEFQVGPSVGIAAADQIWVARYILERITEIYGVVVSFDPKPI-PGDWNGAGAHT 250

Query: 720  NFSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVAD 899
            N+STK MR  GG +VI++A+EKL   H EHI  YG GNE RLTG+HET DINTF  GVA+
Sbjct: 251  NYSTKTMREEGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVAN 310

Query: 900  RGSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTVL 1025
            RG+SIR+      +G GY EDRRPA+N+DPY V  ++ +T +
Sbjct: 311  RGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 352

>sp|P08282|GLN1_PEA Glutamine synthetase nodule isozyme (Glutamate--ammonia ligase)
            (Cytosolic GS1) gi|68588|pir||AJPMQ1 glutamate-ammonia
            ligase (EC 6.3.1.2) beta, cytosolic - garden pea
            gi|169096|gb|AAA33669.1| glutamine synthetase (cytosolic
            GS1) (EC 6.3.1.2)
          Length = 355

 Score =  368 bits (945), Expect = e-100
 Identities = 177/342 (51%), Positives = 236/342 (68%), Gaps = 1/342 (0%)
 Frame = +3

Query: 3    EYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCI 182
            EYIW  G+      G+   ++R K +    P+  D SE P W++DGSSTGQA G +S+ I
Sbjct: 21   EYIWIGGS------GL---DLRCKARTLPGPV-TDPSELPKWNYDGSSTGQAPGQDSEVI 70

Query: 183  LRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIIDDK-VTAEDCWYGFEQE 359
            L P  +  DP R   H+LVMC+ ++P G+P  TN R    ++     V AE+ WYG EQE
Sbjct: 71   LYPQAIFKDPFRRGNHILVMCDAYSPAGEPIPTNKRHAAAKVFSHPDVVAEETWYGIEQE 130

Query: 360  YTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINA 539
            YT+L K      GWPAGG+P PQGP+YC VGA+ AFGR + EAH +AC+ AG+ ISGIN 
Sbjct: 131  YTLLQKDINWPLGWPAGGYPGPQGPYYCSVGADKAFGRDVVEAHYKACLFAGINISGING 190

Query: 540  EVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHT 719
            EVMPGQWE+Q+GP   ++ GDE+ ++R++L R+ E  G+V TF+PKP++ GDWNG GAHT
Sbjct: 191  EVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLTFDPKPIK-GDWNGAGAHT 249

Query: 720  NFSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVAD 899
            N+STK MR  GG ++I++A+EKL K   EHI+ YG GNE RLTGKHET DINTF  GVA+
Sbjct: 250  NYSTKSMREDGGYEIIKKAIEKLGKRLPEHISAYGEGNERRLTGKHETADINTFSWGVAN 309

Query: 900  RGSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTVL 1025
            RG+S+R+      +G GY EDRRPA+N+DPY V  ++ +T +
Sbjct: 310  RGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 351

>gb|AAK08103.1|AF338444_1 glutamine synthetase [Avicennia marina]
          Length = 356

 Score =  367 bits (943), Expect = e-100
 Identities = 175/344 (50%), Positives = 237/344 (68%), Gaps = 1/344 (0%)
 Frame = +3

Query: 3    EYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCI 182
            EY+W  G+      GM   ++RSK +    P+  D S+ P W++DGSSTGQA G +S+ I
Sbjct: 22   EYVWVGGS------GM---DLRSKARTISGPVS-DPSKLPKWNYDGSSTGQAPGEDSEVI 71

Query: 183  LRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIIDDK-VTAEDCWYGFEQE 359
            L P  +  DP R   ++LVMC+ + P G+P  TN R    +I     V AE+ WYG EQE
Sbjct: 72   LYPQAIFRDPFRRGKNILVMCDTYTPAGEPIPTNKRHAAAKIFSHPDVAAEEPWYGIEQE 131

Query: 360  YTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINA 539
            YT+L K      GWP GG+P PQGP+YCGVGA+ AFGR + +AH ++C+ AG+ ISGIN 
Sbjct: 132  YTLLQKNVKWPMGWPTGGYPGPQGPYYCGVGADKAFGRDIVDAHYKSCLYAGINISGING 191

Query: 540  EVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHT 719
            EVMPGQWE+Q+GP   ++ GDE+ ++R++L R+ E  G+V +F+PKP++ GDWNG GAHT
Sbjct: 192  EVMPGQWEFQVGPAVGISAGDELWMARYILERITEIAGVVLSFDPKPIQ-GDWNGAGAHT 250

Query: 720  NFSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVAD 899
            N+STK MR  GG +VI++A+EKL   H EHI  YG GNE RLTG+HET DIN+FK GVA+
Sbjct: 251  NYSTKSMRKEGGFEVIKKAIEKLGHRHKEHIAAYGEGNERRLTGRHETADINSFKWGVAN 310

Query: 900  RGSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTVLKG 1031
            RG+S+R+      +G GY EDRRPA+N+DPY V  ++ +T + G
Sbjct: 311  RGASVRVGRDTEREGKGYFEDRRPASNMDPYIVTSMIAETTILG 354



EST assemble image


clone accession position
1 LC064h06_r AV623510 1 517
2 MX045g05_r BP087886 6 479
3 MX242f04_r BP091682 21 510
4 HC014c01_r AV632909 32 533
5 LC020g10_r AV620341 47 588
6 MX035d03_r BP087476 60 517
7 HC042f08_r AV635159 60 608
8 LC070b06_r AV623894 71 521
9 HC032e04_r AV634367 73 575
10 HC065f11_r AV636889 105 568
11 MX202g11_r BP089207 105 600
12 MX049h06_r BP088035 131 563
13 MX056d08_r BP088287 131 479
14 MX043b04_r BP087762 148 532
15 HC046c12_r AV635436 155 622
16 MX054c07_r BP088217 157 512
17 HC081d09_r AV638064 164 602
18 HC023h08_r AV633680 187 589
19 MX221f10_r BP090295 193 603
20 CM065e09_r AV391134 206 807
21 CM029d04_r AV389345 226 724
22 CM097d04_r AV393171 226 762
23 HC036g11_r AV634709 248 739
24 CM045a08_r AV389710 264 829
25 HC011e06_r AV632698 270 587
26 LC057h07_r AV623022 276 803
27 HC019g10_r AV633351 276 775
28 CM045c05_r AV389686 278 835
29 MXL093f04_r BP098456 280 660
30 CM086e10_r AV392541 319 873
31 HC056e08_r AV636209 333 767
32 CM043g08_r AV389488 334 693
33 LC091b10_r AV625342 339 641
34 CM084b06_r AV392629 341 921
35 HC070a12_r AV637201 342 856
36 HC021f08_r AV633512 343 869
37 HC016d05_r AV633070 345 861
38 CL65f08_r AV396579 346 956
39 CM018g12_r AV387233 349 886
40 HC022g03_r AV633595 359 856
41 CM006c10_r AV387195 370 891
42 CM074h10_r AV391524 370 873
43 MX013c07_r BP086631 371 754
44 MX101f11_r BP088840 378 783
45 MX104h10_r BP089113 378 879
46 MX103b03_r BP088956 378 771
47 MX101b11_r BP088798 378 732
48 CM019c06_r AV387333 399 985
49 CM039b11_r AV388948 427 993
50 HC072h02_r AV637412 435 942
51 CM054a09_r AV389990 441 780
52 CM060h07_r AV390782 452 924
53 CM031a10_r AV388356 452 776
54 HC045g10_r AV635392 458 923
55 CL78b09_r AV397233 460 968
56 CM008a07_r AV386709 461 1033
57 MX006d10_r BP086317 467 864
58 LC066b03_r AV623601 477 990
59 HC027f10_r AV633980 519 1029
60 MX059a04_r BP088379 531 867
61 MX258g08_r BP092762 555 1132
62 HC091h02_r AV638867 592 1067
63 MX012c11_r BP086587 597 1052
64 HC067a07_r AV636983 615 1147
65 CM065f06_r AV391158 681 1287
66 MXL024e07_r BP094533 807 1168
67 CL51h09_r AV395922 882 1422
68 HCL020h06_r AV640697 911 1181
69 CM088c07_r AV393042 919 1481
70 CM082d01_r AV392090 955 1482
71 CM099a11_r AV393167 966 1479
72 CL09e02_r AV393747 986 1494
73 HC002c07_r AV631967 1006 1479
74 MX041e12_r BP087690 1031 1468
75 HC071a03_r AV637275 1033 1538
76 CM005e02_r AV386859 1035 1511
77 HCL065b01_r AV643177 1035 1478
78 HC099h10_r AV639484 1040 1479
79 MX212h07_r BP089721 1051 1430
80 HC080d03_r AV637993 1064 1505
81 HC099h04_r AV639478 1093 1479
82 HCL001a03_r AV639558 1134 1450
83 CL78d05_r AV397231 1375 1479




Chlamydomonas reinhardtii
Kazusa DNA Research Institute