Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000171A_C01 KCC000171A_c01
(1254 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL84247.1|AF458047_1 type III effector HopPmaI [Pseudomonas ... 33 0.43
ref|NP_296138.1| conserved hypothetical protein [Deinococcus rad... 30 0.55
gb|AAN11194.1| Hypothetical protein [Oryza sativa (japonica cult... 29 0.58
gb|AAO61195.1|AF411814_1 Gag polyprotein [amphotropic murine leu... 37 0.73
gb|AAO61197.1|AF411814_3 Gag-Pro-Pol polyprotein [amphotropic mu... 37 0.73
>gb|AAL84247.1|AF458047_1 type III effector HopPmaI [Pseudomonas syringae pv. maculicola]
Length = 432
Score = 33.1 bits (74), Expect(2) = 0.43
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = -1
Query: 732 RPSSHKGGYASEHGRPGIGANARVHTSPASNTCPPP*RAAMPHTNPGVVPNSQHSHRPE 556
RPSS + G A + RP +R P +N+ PPP RA P G +Q RPE
Sbjct: 227 RPSSGRPGGAQQQARPETPPRSR----PQTNSAPPPPRAE-PRPASGRPGGAQQQARPE 280
Score = 23.5 bits (49), Expect(2) = 0.43
Identities = 11/23 (47%), Positives = 12/23 (51%)
Frame = -3
Query: 493 QPFNPGTCPPSRPHTSTDNPPAS 425
Q P T P SRP T+ PP S
Sbjct: 312 QQARPETPPRSRPQTNNAPPPRS 334
>ref|NP_296138.1| conserved hypothetical protein [Deinococcus radiodurans]
Length = 579
Score = 30.0 bits (66), Expect(2) = 0.55
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 481 PGTCPPSRPHTSTDNPPASFAYAPVRRLRKLPPADASRRHVRAGS 347
P CPP +P T NPP R+ P +RR+VR G+
Sbjct: 497 PRLCPP-QPRPRTANPPGGARSRGTGPAREKAPGRRARRYVRRGA 540
Score = 26.2 bits (56), Expect(2) = 0.55
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Frame = -1
Query: 720 HKGGYASEHGRPGIGANARVHTS----PASNTCPPP*RAAMPHTNPG 592
H+GG GRPG G R + P P R A PH G
Sbjct: 447 HRGGGRGLRGRPGRGRRERRRAARPRQPQPGRAADPDRRAAPHPARG 493
>gb|AAN11194.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|31430037|gb|AAP52008.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 293
Score = 28.9 bits (63), Expect(2) = 0.58
Identities = 25/102 (24%), Positives = 37/102 (35%), Gaps = 2/102 (1%)
Frame = -3
Query: 634 PTALTCRHAPHQSGRGAQ*PALTPPRGTCGRRSISTLSPM*HWT**VQPFNPGTCPPSRP 455
P + T P G P PP + G S +P ++ P P PPS
Sbjct: 143 PASGTSPSTPGSGGYSPSTPCSAPPLPSSGT---SPTTPGGGYS----PSTPCNAPPSPS 195
Query: 454 HTSTDNPPASFAYAPVRRLRKLPPADAS--RRHVRAGSCTSS 335
++ P Y P + +PP+ +S G C+SS
Sbjct: 196 SDTSPTTPGGGNYPPAPTIGNVPPSPSSGTSPSTPGGGCSSS 237
Score = 27.3 bits (59), Expect(2) = 0.58
Identities = 31/120 (25%), Positives = 45/120 (36%), Gaps = 5/120 (4%)
Frame = -1
Query: 975 HACMRKCWVGARPAGWQSRGYGCRIAAMCIV*IQTPHT-----PAQNVYSIQSVQIIPYQ 811
HA + W + GW + R AA + + HT PA V+ ++ +
Sbjct: 37 HAALAVQWQLSHYTGWMLHSHAVRHAARAVEWHLSDHTGWKLLPAHAVHWRRATLAVQRH 96
Query: 810 QAK*GKVCLPL*CQPVNRPLFQPLGHRPSSHKGGYASEHGRPGIGANARVHTSPASNTCP 631
+ LP P + P G P++ GGY P +G V SPAS T P
Sbjct: 97 LSDHTGRRLP--STPCDTPPLPSSGTSPTTPGGGYYPP--TPSVG---DVPPSPASGTSP 149
>gb|AAO61195.1|AF411814_1 Gag polyprotein [amphotropic murine leukemia virus]
Length = 536
Score = 37.0 bits (84), Expect = 0.73
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -2
Query: 371 PPPCACGILHQQPQLPTGYATLIESIPSVLPTSYLR-PTANSLYLAKTPALGPAP-PSHL 198
PPP +H +P LP S PS+LP L P +SLY A TP+LG P P L
Sbjct: 93 PPPWVKPFVHPKPPLPP-------SAPSLLPEPPLSTPPRSSLYPALTPSLGAKPKPQVL 145
Query: 197 P 195
P
Sbjct: 146 P 146
>gb|AAO61197.1|AF411814_3 Gag-Pro-Pol polyprotein [amphotropic murine leukemia virus]
Length = 1736
Score = 37.0 bits (84), Expect = 0.73
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -2
Query: 371 PPPCACGILHQQPQLPTGYATLIESIPSVLPTSYLR-PTANSLYLAKTPALGPAP-PSHL 198
PPP +H +P LP S PS+LP L P +SLY A TP+LG P P L
Sbjct: 93 PPPWVKPFVHPKPPLPP-------SAPSLLPEPPLSTPPRSSLYPALTPSLGAKPKPQVL 145
Query: 197 P 195
P
Sbjct: 146 P 146
