KCC000147A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000147A_C01 KCC000147A_c01
GAAAACTGAACATGTACAAATAGCTCGAAACGGGAAGGATGTCGCAGTTCAACTGTTTCG
GACAGCAAGTGCCTCAGGCGACACCCTGGATCCCCTTGACGCTGCACAGTCATTTAACAA
CTGGTCACGGTCAATGGGGCATAGAAACGGAGGCTGTTGAACACGTTCAGGGCGCGCTCG
TCAGCGAAGCGCAGGGTGCGCTCAGCAGCCCGGTGCAGACAGAGGATGCTATTCAAATGT
GTGTCGACTCAGGTTCTCCGAAAGCGGCCCGGAAAGCTGCCGAGCGGAGACGGAAGGTTT
GTCGTTTCGCGTTGCCGTGGCGCCTACGAGCAGCTTGCAGCTGCATTTGTGCTTACAGCA
GCATCAGGTCGGGTCTCTGGAGTTGTAATGTATCACCTAGGGACCCGCGCTACGGATCCG
CGCTAAGATGCGCGTCGTAACCACGGCGTTGTAGCACTGTGTAGAGTGTGCTGTACTGCA
CCTTTGGTAACAGGGGGCATCGGCGCCGCGCCCACAACAGTTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000147A_C01 KCC000147A_c01
         (524 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_650903.1| CG5483-PA [Drosophila melanogaster] gi|23176012...    33  1.7
emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa (japonica cultivar...    33  1.7
pir||T03455 ALR protein - human gi|2358287|gb|AAC51735.1| ALR [H...    32  3.8
ref|NP_003473.1| myeloid/lymphoid or mixed-lineage leukemia 2; A...    32  3.8
ref|NP_508127.1| putative protein, with at least 2 transmembrane...    32  3.8

>ref|NP_650903.1| CG5483-PA [Drosophila melanogaster] gi|23176012|gb|AAF55793.2|
            CG5483-PA [Drosophila melanogaster]
          Length = 2351

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +2

Query: 14   VQIARNGKDVAVQLFRTASASGDTLDPLDAAQSFNNWSRSMGHRNGGC*TRSGRARQRSA 193
            V +A  GK   + L R  + SG +     +  S N+W++ MGH      +RS R    S+
Sbjct: 931  VGVAGIGKSTLLDLLRQGAGSGSSSSSHRSRASENHWAKRMGHARST--SRSHRHSSASS 988

Query: 194  GCAQQPGADRGCYSNVCRLR 253
                  G D G +  +C  R
Sbjct: 989  ANISTVGVDIGTW--ICEKR 1006

>emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa (japonica cultivar-group)]
           gi|32480229|emb|CAE02052.1| OJ990528_30.10 [Oryza sativa
           (japonica cultivar-group)]
          Length = 479

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 180 VSEAQGALSSPVQTEDAIQMCVDSGSPKAARKAAERRRKVCRF--ALPWR 323
           V+     ++ P Q ++ + +  +SG PKA RK  + RR V RF  +L W+
Sbjct: 80  VNSQNHTIAEPQQKQEDVALVDESGRPKAKRKKLKGRRAVTRFLKSLRWK 129

>pir||T03455 ALR protein - human gi|2358287|gb|AAC51735.1| ALR [Homo sapiens]
          Length = 4957

 Score = 32.3 bits (72), Expect = 3.8
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 114  LTTGHGQWGIETEAVEHVQGALVSEAQGALSSPVQTEDAIQMCVDSGSPKAARKAAER 287
            L+TG G  G+  E   H+   L    Q    +P   EDA      +  PK  +KA++R
Sbjct: 3894 LSTGQGSEGLRAEINGHIDSKLAGLEQKLQGTPSNKEDAAARKPLTPKPKRVQKASDR 3951

>ref|NP_003473.1| myeloid/lymphoid or mixed-lineage leukemia 2; ALL1-related gene [Homo
            sapiens] gi|7460240|pir||T03454 ALR protein - human
            gi|2358285|gb|AAC51734.1| ALR [Homo sapiens]
          Length = 5262

 Score = 32.3 bits (72), Expect = 3.8
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 114  LTTGHGQWGIETEAVEHVQGALVSEAQGALSSPVQTEDAIQMCVDSGSPKAARKAAER 287
            L+TG G  G+  E   H+   L    Q    +P   EDA      +  PK  +KA++R
Sbjct: 4199 LSTGQGSEGLRAEINGHIDSKLAGLEQKLQGTPSNKEDAAARKPLTPKPKRVQKASDR 4256

>ref|NP_508127.1| putative protein, with at least 2 transmembrane domains, a coiled
           coil-4 domain (XB223) [Caenorhabditis elegans]
           gi|7498990|pir||T33331 hypothetical protein F13C5.1 -
           Caenorhabditis elegans gi|3319396|gb|AAC64611.1|
           Hypothetical protein F13C5.1 [Caenorhabditis elegans]
          Length = 437

 Score = 32.3 bits (72), Expect = 3.8
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 118 QLVTVNGA*KRRLLNTFRARSSAKRRVRSAARCRQRMLFKCVSTQVLRKRP-GKLPSGDG 294
           Q V  N A  R L  T RAR   KRR RS+A C    L    S   ++    G LP  D 
Sbjct: 297 QKVAPNRAATRTLKKTVRARKLTKRRKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDN 356

Query: 295 RFVVSRCRGA 324
            +  + C  A
Sbjct: 357 SYAANICSAA 366



EST assemble image


clone accession position
1 HCL098c05_r AV645103 1 423
2 LCL097e04_r AV631645 246 524




Chlamydomonas reinhardtii
Kazusa DNA Research Institute