[KDRI]Chlamydomonas reinhardtii EST index

KCC000141A_c01
[Fasta Sequence] [Nr Search] [EST assemble image]

>KCC000141A_C01 KCC000141A_c01
CACAATGGCTGCCGAAGTGGCAAGAAGTGTGGCCCCCACCCCGTGCCGCGTGTGAAGAAG
GGCGGCCGCCCCGTGCCAAGCAGACCAACCCTCTCTATGAGAAGCTGGGCTAAGTGCTTT
CGGCCTGGGCGGTGCCCCCAAGCCGAAGCGCGACCTGCACCGCTTCGTGAAGTGGCCCCA
GTACGTGCTGCCTAGCAGCGCCAGAAGCGCTGTGCTGTCGATGCGCCTGAAGGTGCCCCC
GGTCATCAACCAGTTCTGTCACCCGCGCGCTGGACAAGAACTCGGCGGAGACCTGCTTCA
AGCTGCTGATGAAGTACCGCCCCGAGGACAAGAAGCAGAAGGCTGAGCTGCCTGAAGGCC
GAGGCCGCTGCCCGCGAGGCCGGCAAGGAGGCTGAGAAGAAGAAGCCCGTCGTGGTCAAG
TACGGCCTGAACCACATCACCACTCTGGTGGAGTCGGGCAAGGCGCAGATGGTGGTCATC
GCCCACGACGTGGACCCCATCGAGCTGGTGTGCTGGCTCCCAGCCCTGTGCCGCAAGATG
GGCGTGCCCTACGCGATTGTGAAGGGCAAGGCTCGCCTGGGCCAGATTGTGCACAAGAAG
ACCGCCACCGCCCTGGCCCTGACCGCGGTGAAGAACCGAGGACCAGCGTGAGTTCGCCAA
GCTGGTGGAGAGCTTCAAGAGCCAGTACAACGAGGGCCCGCGCGTCCAGTGGGGCGGGCA
CATCCTGGGCATGAAGTCCGTGCACAAGCAGAAGAAGCGCGAGCGCGCCATCGCCAAGGA
GCTGGCGCAGCGCGCCGGCGTGTAAGCGCCTCACGGCGGCAACCGCTGTGCGGCCTGGCG
CCGTCGCGCCTGCTTCGTGCGGGAGGCGGCGGCGGACACGCATGCCGCTGGTGGGCCCCC
TGTCGGAGGAGCCAGCGGCGGGGGCGGCTGTGGTGGAGCGGTCCGCGCAGCAGCCAACGT
CGCCGTTTGCTAGTGGCGCGGCTCTCGGAAGTGTAATGGGTTCAAAGTGacctggtgc

Nr search



BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000141A_C01 KCC000141A_c01
         (1018 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC22311.1| 60S ribosomal protein L7A [Oryza sativa (japonic...   144  1e-60
sp|P35685|RL7A_ORYSA 60S RIBOSOMAL PROTEIN L7A gi|542158|pir||S3...   144  1e-60
ref|NP_191846.1| 60S ribosomal protein L7A (RPL7aB) [Arabidopsis...   144  4e-59
ref|NP_182283.1| 60S ribosomal protein L7A (RPL7aA) [Arabidopsis...   142  2e-58
ref|XP_122526.1| similar to ribosomal protein L7a; surfeit 3 [Mu...   122  2e-45

>dbj|BAC22311.1| 60S ribosomal protein L7A [Oryza sativa (japonica cultivar-group)]
          Length = 306

 Score =  144 bits (363), Expect(4) = 1e-60
 Identities = 71/105 (67%), Positives = 79/105 (74%)
 Frame = +1

Query: 322 PRTRSRRLSCLKAEAAAREAGKEAEKKKPVVVKYGLNHITTLVESGKAQMVVIAHDVDPI 501
           P  ++ +   L   A A   GK  E KKP+VVKYGLNH+T L+E  KAQ+VVIAHDVDPI
Sbjct: 145 PEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPI 204

Query: 502 ELVCWLPALCRKMGVPYAIVKGKARLGQIVHKKTATALALTAVKN 636
           ELV WLPALCRKM VPY IVKGKARLG IVHKKTA+ L LT VKN
Sbjct: 205 ELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKN 249

 Score = 59.7 bits (143), Expect(4) = 1e-60
 Identities = 28/46 (60%), Positives = 33/46 (70%)
 Frame = +2

Query: 119 FGLGGAPKPKRDLHRFVKWPQYVLPSSARSAVLSMRLKVPPVINQF 256
           FG+GGA  PK+DLHRFVKWP+ V     R  +L  RLKVPP +NQF
Sbjct: 80  FGIGGALPPKKDLHRFVKWPKVVRIQRQR-RILKQRLKVPPALNQF 124

 Score = 52.8 bits (125), Expect(4) = 1e-60
 Identities = 25/57 (43%), Positives = 39/57 (67%), Gaps = 3/57 (5%)
 Frame = +2

Query: 632 RTEDQREFAKLVESFKSQYNEG---PRVQWGGHILGMKSVHKQKKRERAIAKELAQR 793
           + ED+ EF+K++E+ K+ +N+     R +WGG ++G KS  K K RE+ +AKE AQR
Sbjct: 248 KNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQR 304

 Score = 42.0 bits (97), Expect(4) = 1e-60
 Identities = 19/29 (65%), Positives = 21/29 (71%)
 Frame = +3

Query: 261 TRALDKNSAETCFKLLMKYRPEDKKQKAE 347
           TR LDKN A   FK+L+KYRPEDK  K E
Sbjct: 125 TRTLDKNLATNLFKMLLKYRPEDKAAKKE 153

>sp|P35685|RL7A_ORYSA 60S RIBOSOMAL PROTEIN L7A gi|542158|pir||S38360 ribosomal protein
           L7a, cytosolic - rice gi|303855|dbj|BAA02156.1|
           ribosomal protein L7A [Oryza sativa (japonica
           cultivar-group)]
          Length = 258

 Score =  144 bits (363), Expect(4) = 1e-60
 Identities = 71/105 (67%), Positives = 79/105 (74%)
 Frame = +1

Query: 322 PRTRSRRLSCLKAEAAAREAGKEAEKKKPVVVKYGLNHITTLVESGKAQMVVIAHDVDPI 501
           P  ++ +   L   A A   GK  E KKP+VVKYGLNH+T L+E  KAQ+VVIAHDVDPI
Sbjct: 97  PEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPI 156

Query: 502 ELVCWLPALCRKMGVPYAIVKGKARLGQIVHKKTATALALTAVKN 636
           ELV WLPALCRKM VPY IVKGKARLG IVHKKTA+ L LT VKN
Sbjct: 157 ELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKN 201

 Score = 59.7 bits (143), Expect(4) = 1e-60
 Identities = 28/46 (60%), Positives = 33/46 (70%)
 Frame = +2

Query: 119 FGLGGAPKPKRDLHRFVKWPQYVLPSSARSAVLSMRLKVPPVINQF 256
           FG+GGA  PK+DLHRFVKWP+ V     R  +L  RLKVPP +NQF
Sbjct: 32  FGIGGALPPKKDLHRFVKWPKVVRIQRQR-RILKQRLKVPPALNQF 76

 Score = 52.8 bits (125), Expect(4) = 1e-60
 Identities = 25/57 (43%), Positives = 39/57 (67%), Gaps = 3/57 (5%)
 Frame = +2

Query: 632 RTEDQREFAKLVESFKSQYNEG---PRVQWGGHILGMKSVHKQKKRERAIAKELAQR 793
           + ED+ EF+K++E+ K+ +N+     R +WGG ++G KS  K K RE+ +AKE AQR
Sbjct: 200 KNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQR 256

 Score = 42.0 bits (97), Expect(4) = 1e-60
 Identities = 19/29 (65%), Positives = 21/29 (71%)
 Frame = +3

Query: 261 TRALDKNSAETCFKLLMKYRPEDKKQKAE 347
           TR LDKN A   FK+L+KYRPEDK  K E
Sbjct: 77  TRTLDKNLATNLFKMLLKYRPEDKAAKKE 105

>ref|NP_191846.1| 60S ribosomal protein L7A (RPL7aB) [Arabidopsis thaliana]
           gi|11276721|pir||T48076 60S RIBOSOMAL PROTEIN L7A
           protein - Arabidopsis thaliana
           gi|7362767|emb|CAB83137.1| 60S RIBOSOMAL PROTEIN L7A
           protein [Arabidopsis thaliana]
           gi|15529280|gb|AAK97734.1| AT3g62870/F26K9_300
           [Arabidopsis thaliana] gi|16974413|gb|AAL31132.1|
           AT3g62870/F26K9_300 [Arabidopsis thaliana]
           gi|17065364|gb|AAL32836.1| 60S RIBOSOMAL PROTEIN L7A
           protein [Arabidopsis thaliana]
           gi|21387165|gb|AAM47986.1| 60S ribosomal protein L7A
           protein [Arabidopsis thaliana]
           gi|21592470|gb|AAM64421.1| 60S RIBOSOMAL PROTEIN L7A
           protein [Arabidopsis thaliana]
          Length = 256

 Score =  144 bits (362), Expect(4) = 4e-59
 Identities = 70/105 (66%), Positives = 81/105 (76%)
 Frame = +1

Query: 322 PRTRSRRLSCLKAEAAAREAGKEAEKKKPVVVKYGLNHITTLVESGKAQMVVIAHDVDPI 501
           P  ++ +   L  +A A   GK AE KKP+VVKYGLNH+T L+E  KAQ+VVIAHDVDPI
Sbjct: 95  PEDKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPI 154

Query: 502 ELVCWLPALCRKMGVPYAIVKGKARLGQIVHKKTATALALTAVKN 636
           ELV WLPALCRKM VPY IVKGK+RLG +VH+KTA AL LT VKN
Sbjct: 155 ELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKN 199

 Score = 55.1 bits (131), Expect(4) = 4e-59
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
 Frame = +2

Query: 632 RTEDQREFAKLVESFKSQYN---EGPRVQWGGHILGMKSVHKQKKRERAIAKELAQR 793
           + ED+ EF+K++E+ K+ +N   E  R +WGG I+G KS  K K +ER IAKE AQR
Sbjct: 198 KNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQR 254

 Score = 53.1 bits (126), Expect(4) = 4e-59
 Identities = 23/46 (50%), Positives = 32/46 (69%)
 Frame = +2

Query: 119 FGLGGAPKPKRDLHRFVKWPQYVLPSSARSAVLSMRLKVPPVINQF 256
           FG+GGA  PK+DL R++KWP+ +     +  +L  RLKVPP +NQF
Sbjct: 30  FGIGGALPPKKDLSRYIKWPKSI-RLQRQKRILKQRLKVPPALNQF 74

 Score = 41.2 bits (95), Expect(4) = 4e-59
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +3

Query: 261 TRALDKNSAETCFKLLMKYRPEDKKQKAE 347
           T+ LDKN A + FK+L+KYRPEDK  K E
Sbjct: 75  TKTLDKNLATSLFKILLKYRPEDKAAKKE 103

>ref|NP_182283.1| 60S ribosomal protein L7A (RPL7aA) [Arabidopsis thaliana]
           gi|6174956|sp|P49692|RL7A_ARATH 60S ribosomal protein
           L7A gi|7440707|pir||T00423 ribosomal protein L7a,
           cytosolic - Arabidopsis thaliana
           gi|2529665|gb|AAC62850.1| 60S ribosomal protein L7A
           [Arabidopsis thaliana]
           gi|14326531|gb|AAK60310.1|AF385719_1 At2g47610/T30B22.8
           [Arabidopsis thaliana] gi|15450613|gb|AAK96578.1|
           At2g47610/T30B22.8 [Arabidopsis thaliana]
           gi|21594006|gb|AAM65924.1| 60S ribosomal protein L7A
           [Arabidopsis thaliana] gi|23308199|gb|AAN18069.1|
           At2g47610/T30B22.8 [Arabidopsis thaliana]
          Length = 257

 Score =  142 bits (357), Expect(4) = 2e-58
 Identities = 68/105 (64%), Positives = 81/105 (76%)
 Frame = +1

Query: 322 PRTRSRRLSCLKAEAAAREAGKEAEKKKPVVVKYGLNHITTLVESGKAQMVVIAHDVDPI 501
           P  ++ +   L  +A A   GK +E KKP+VVKYGLNH+T L+E  KAQ+VVIAHDVDPI
Sbjct: 96  PEDKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPI 155

Query: 502 ELVCWLPALCRKMGVPYAIVKGKARLGQIVHKKTATALALTAVKN 636
           ELV WLPALCRKM VPY IVKGK+RLG +VH+KTA+ L LT VKN
Sbjct: 156 ELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKN 200

 Score = 55.1 bits (131), Expect(4) = 2e-58
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
 Frame = +2

Query: 632 RTEDQREFAKLVESFKSQYN---EGPRVQWGGHILGMKSVHKQKKRERAIAKELAQR 793
           + ED+ EF+K++E+ K+ +N   E  R +WGG I+G KS  K K +ER IAKE AQR
Sbjct: 199 KNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQR 255

 Score = 53.1 bits (126), Expect(4) = 2e-58
 Identities = 23/46 (50%), Positives = 32/46 (69%)
 Frame = +2

Query: 119 FGLGGAPKPKRDLHRFVKWPQYVLPSSARSAVLSMRLKVPPVINQF 256
           FG+GGA  PK+DL R++KWP+ +     +  +L  RLKVPP +NQF
Sbjct: 31  FGIGGALPPKKDLSRYIKWPKSI-RLQRQKRILKQRLKVPPALNQF 75

 Score = 40.8 bits (94), Expect(4) = 2e-58
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +3

Query: 261 TRALDKNSAETCFKLLMKYRPEDKKQKAE 347
           T+ LDKN A + FK+L+KYRPEDK  K E
Sbjct: 76  TKTLDKNLATSLFKVLLKYRPEDKAAKKE 104

>ref|XP_122526.1| similar to ribosomal protein L7a; surfeit 3 [Mus musculus]
          Length = 266

 Score =  122 bits (307), Expect(4) = 2e-45
 Identities = 63/110 (57%), Positives = 82/110 (74%), Gaps = 3/110 (2%)
 Frame = +1

Query: 322 PRTRSRRLSCLKAEAAAREAGKEA-EKKKPVVVKYGLNHITTLVESGKAQMVVIAHDVDP 498
           P T+  +   L A A  + AGK+    K+P V++ G+N +TTLVE+ KAQ+VVIAHDVDP
Sbjct: 104 PETKQEKKQRLLAHAEKKAAGKDTIPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDP 163

Query: 499 IELVCWLPALCRKMGVPYAIVKGKARLGQIVHKKTATALALTAV--KNRG 642
           IELV +LPALC+KMGVPY I+KGKARLG +VH+KT T +A T V  +N+G
Sbjct: 164 IELVVFLPALCQKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSENKG 213

 Score = 46.6 bits (109), Expect(4) = 2e-45
 Identities = 25/46 (54%), Positives = 29/46 (62%)
 Frame = +2

Query: 119 FGLGGAPKPKRDLHRFVKWPQYVLPSSARSAVLSMRLKVPPVINQF 256
           FG+G   +PKR L  FVKWP Y+     R A+L  RLKVPP I QF
Sbjct: 39  FGIGQDIQPKRVLTCFVKWPCYIRLQQQR-AILYKRLKVPPAIKQF 83

 Score = 45.4 bits (106), Expect(4) = 2e-45
 Identities = 26/58 (44%), Positives = 36/58 (61%), Gaps = 3/58 (5%)
 Frame = +2

Query: 635 TEDQREFAKLVESFKSQYNE---GPRVQWGGHILGMKSVHKQKKRERAIAKELAQRAG 799
           +E++   AKLVE+ ++ YN+     R  WG +ILG KSV +  K E+A AKELA   G
Sbjct: 209 SENKGALAKLVEAIRTNYNDIYDKIRCHWGDNILGPKSVARIAKLEKAKAKELATNLG 266

 Score = 32.0 bits (71), Expect(4) = 2e-45
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 261 TRALDKNSAETCFKLLMKYRPEDKKQKAE 347
           T+ALD+ +A    KL  KYRPE K++K +
Sbjct: 84  TQALDRQTATQLLKLSHKYRPETKQEKKQ 112

EST assemble image

	clone	accession	position
1	CL06g06_r	AV393630	1	636
2	CM037b01_r	AV388832	85	505
3	LCL061h10_r	AV629610	85	551
4	LCL058d08_r	AV629417	86	525
5	LC089e03_r	AV625221	86	636
6	LC037g12_r	AV621561	86	624
7	LCL041c03_r	AV628401	86	440
8	LCL031c03_r	AV627730	86	478
9	LC022g11_r	AV620487	87	681
10	CM022b07_r	AV387858	87	666
11	MXL078c08_r	BP097599	88	569
12	LC087b08_r	AV625051	89	596
13	CM036d01_r	AV388772	89	448
14	LC033c11_r	AV621244	90	689
15	LC046f12_r	AV622216	90	645
16	HC076f06_r	AV637719	90	636
17	LC020h06_r	AV620349	90	665
18	LC008d08_r	AV619442	90	624
19	LC015h07_r	AV619987	90	659
20	LC090h07_r	AV625323	90	686
21	LC083h06_r	AV624872	90	676
22	LC019f06_r	AV620254	90	641
23	HC044g10_r	AV635317	91	607
24	CL14g12_r	AV393871	93	588
25	CM085h08_r	AV392388	93	659
26	CM048e02_r	AV389090	93	373
27	CM015c12_r	AV387415	93	721
28	CM075g12_r	AV391642	94	633
29	HC096h11_r	AV639251	94	471
30	HC033c03_r	AV634427	94	625
31	CM028d01_r	AV387666	94	724
32	CL40e11_r	AV395390	95	653
33	CM019f09_r	AV387346	95	764
34	CM046h03_r	AV388054	95	667
35	HC059f10_r	AV636452	95	609
36	CM088b07_r	AV393039	96	626
37	CM035d04_r	AV388737	96	692
38	CM024e11_r	AV388284	96	758
39	CM038b01_r	AV389020	96	598
40	CM027e06_r	AV387654	96	726
41	CM008g06_r	AV386766	96	581
42	LC093b02_r	AV625470	96	331
43	MXL024e01_r	BP094528	96	417
44	LCL012d10_r	AV626621	96	682
45	CM013d01_r	AV387032	97	571
46	CM087d11_r	AV392440	97	602
47	LC013g11_r	AV619834	99	644
48	MXL018g04_r	BP094146	100	368
49	CM008a06_r	AV386751	100	705
50	MX013f02_r	BP086644	103	630
51	CM033d04_r	AV388378	103	708
52	CM032b08_r	AV388528	104	634
53	HC037e10_r	AV634761	105	480
54	CL60f05_r	AV396382	105	644
55	LC004h07_r	AV619186	105	690
56	MXL058b09_r	BP096403	105	542
57	CL07g02_r	AV393474	106	617
58	CM050c08_r	AV389749	106	512
59	HC053c01_r	AV635952	106	361
60	MXL092a01_r	BP098348	108	537
61	CL06f10_r	AV393654	109	683
62	CM063c05_r	AV390065	109	785
63	CL06f11_r	AV393634	115	417
64	LC007d08_r	AV619372	118	647
65	CL72c10_r	AV397011	121	692
66	CM057a06_r	AV390450	123	690
67	CM021h06_r	AV387945	126	748
68	CM096h08_r	AV392790	206	646
69	HC098c10_r	AV392790	212	645
70	CM085g04_r	AV392386	264	537
71	CM081g12_r	AV391932	284	647
72	CM083d12_r	AV392195	294	538
73	CM078g12_r	AV391851	615	1108
74	CM082e10_r	AV392099	640	1149
75	HC002g10_r	AV632009	731	1133
76	HCL098h04_r	AV645152	834	1140
77	MXL090e06_r	BP098267	842	1140

Chlamydomonas reinhardtii
Kazusa DNA Research Institute