KCC000140A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000140A_C01 KCC000140A_c01
CACCTCTGTGCTGTAGGTCACGTACTTGCTGCTTATTTCTGGCCGCCGCCGACAACCTCG
CAGGCCGCCAAACAGCCCTGACACAGAGGCGGTCGTCTCACAACTCGCACAACCAGGCCA
CATCGCTTAGCTATAACCTTGAGTAGGAACCTCTCTTTAATACACACGCCCCTGAGGGGC
TTTTGGTGCTTCCGTTAAGGAGCAGACGCGCAGCCATGCCCAACGCAGTGAACCTTAAGA
CCATCCAGGTCGTCCCTGGCGCCAAGGACTTTATTGATATCGTCCTTTCAAAGACCCAGC
GCGGCACGCCCACCGTTGTGCACAATGGCTGGGCGATTCAGCGCATCCGCCAGTTCTACA
TGCGTAAAGTCAAGTTTACGCAGCAGAACTGGAACGAGAAGCTCTCTGCAATTCTGGATG
AGTTCCCGAAGGTGGAGGATATCCACCCCTTCTACGCCGACCTGCTGAACGTGCTCTATG
ACAAGGACCACTACAAGCTGGCGTTGGGCCAGCTCAACACGGCGCGCAACCTCGTCGACC
GTGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000140A_C01 KCC000140A_c01
         (544 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_610484.1| CG8801-PA [Drosophila melanogaster] gi|17369753...   164  5e-40
ref|NP_446141.1| G protein-binding protein CRFG [Rattus norvegic...   163  2e-39
dbj|BAB27714.1| unnamed protein product [Mus musculus]                163  2e-39
gb|AAK13445.1|AF325354_1 G protein-binding protein CRFG [Mus mus...   163  2e-39
ref|NP_081276.2| GTP binding protein 4; GTP-binding protein NGB;...   163  2e-39

>ref|NP_610484.1| CG8801-PA [Drosophila melanogaster]
           gi|17369753|sp|Q9V411|NOG1_DROME Probable nucleolar
           GTP-binding protein 1
           gi|5901862|gb|AAD55439.1|AF181654_1 BcDNA.LD23830
           [Drosophila melanogaster] gi|7303900|gb|AAF58945.1|
           CG8801-PA [Drosophila melanogaster]
          Length = 652

 Score =  164 bits (416), Expect = 5e-40
 Identities = 77/103 (74%), Positives = 91/103 (87%)
 Frame = +3

Query: 231 NLKTIQVVPGAKDFIDIVLSKTQRGTPTVVHNGWAIQRIRQFYMRKVKFTQQNWNEKLSA 410
           N K I VVP AKDFIDI+LSKTQR TPTVVH G+ I RIR FY RKVK+TQQN++++LS 
Sbjct: 5   NFKKIMVVPPAKDFIDIMLSKTQRKTPTVVHKGYKISRIRAFYTRKVKYTQQNFHDRLSQ 64

Query: 411 ILDEFPKVEDIHPFYADLLNVLYDKDHYKLALGQLNTARNLVD 539
           I+ +FPK++D+HPFYADL+NVLYDKDHYKLALGQLNTAR+LVD
Sbjct: 65  IIQDFPKLDDVHPFYADLMNVLYDKDHYKLALGQLNTARHLVD 107

>ref|NP_446141.1| G protein-binding protein CRFG [Rattus norvegicus]
           gi|17367377|sp|Q99P77|NOG1_RAT Nucleolar GTP-binding
           protein 1 (Chronic renal failure gene protein)
           gi|13160994|gb|AAK13446.1|AF325355_1 G protein-binding
           protein CRFG [Rattus norvegicus]
          Length = 637

 Score =  163 bits (412), Expect = 2e-39
 Identities = 75/103 (72%), Positives = 89/103 (85%)
 Frame = +3

Query: 231 NLKTIQVVPGAKDFIDIVLSKTQRGTPTVVHNGWAIQRIRQFYMRKVKFTQQNWNEKLSA 410
           N K I VVP AKDFID+ LSKTQR TPTV+H  + I RIR FYMRKVKFTQQN++++LS 
Sbjct: 5   NFKKITVVPSAKDFIDLTLSKTQRKTPTVIHKHYQIHRIRHFYMRKVKFTQQNYHDRLSQ 64

Query: 411 ILDEFPKVEDIHPFYADLLNVLYDKDHYKLALGQLNTARNLVD 539
           IL +FPK++DIHPFYADL+N+LYDKDHYKLALGQ+N A+NLVD
Sbjct: 65  ILSDFPKLDDIHPFYADLMNILYDKDHYKLALGQINIAKNLVD 107

>dbj|BAB27714.1| unnamed protein product [Mus musculus]
          Length = 346

 Score =  163 bits (412), Expect = 2e-39
 Identities = 75/103 (72%), Positives = 89/103 (85%)
 Frame = +3

Query: 231 NLKTIQVVPGAKDFIDIVLSKTQRGTPTVVHNGWAIQRIRQFYMRKVKFTQQNWNEKLSA 410
           N K I VVP AKDFID+ LSKTQR TPTV+H  + I RIR FYMRKVKFTQQN++++LS 
Sbjct: 5   NFKKITVVPSAKDFIDLTLSKTQRKTPTVIHKHYQIHRIRHFYMRKVKFTQQNYHDRLSQ 64

Query: 411 ILDEFPKVEDIHPFYADLLNVLYDKDHYKLALGQLNTARNLVD 539
           IL +FPK++DIHPFYADL+N+LYDKDHYKLALGQ+N A+NLVD
Sbjct: 65  ILSDFPKLDDIHPFYADLMNILYDKDHYKLALGQINIAKNLVD 107

>gb|AAK13445.1|AF325354_1 G protein-binding protein CRFG [Mus musculus]
          Length = 634

 Score =  163 bits (412), Expect = 2e-39
 Identities = 75/103 (72%), Positives = 89/103 (85%)
 Frame = +3

Query: 231 NLKTIQVVPGAKDFIDIVLSKTQRGTPTVVHNGWAIQRIRQFYMRKVKFTQQNWNEKLSA 410
           N K I VVP AKDFID+ LSKTQR TPTV+H  + I RIR FYMRKVKFTQQN++++LS 
Sbjct: 5   NFKKITVVPSAKDFIDLTLSKTQRKTPTVIHKHYQIHRIRHFYMRKVKFTQQNYHDRLSQ 64

Query: 411 ILDEFPKVEDIHPFYADLLNVLYDKDHYKLALGQLNTARNLVD 539
           IL +FPK++DIHPFYADL+N+LYDKDHYKLALGQ+N A+NLVD
Sbjct: 65  ILSDFPKLDDIHPFYADLMNILYDKDHYKLALGQINIAKNLVD 107

>ref|NP_081276.2| GTP binding protein 4; GTP-binding protein NGB; chronic renal
           failure protein; GTP binding protein 3 [Mus musculus]
           gi|17368619|sp|Q99ME9|NOG1_MOUSE Nucleolar GTP-binding
           protein 1 (Chronic renal failure gene protein)
           (GTP-binding protein NGB)
           gi|13346459|gb|AAK19749.1|AF348208_1 GTP-binding protein
           NGB [Mus musculus] gi|19343845|gb|AAH25431.1| GTP
           binding protein 4 [Mus musculus]
          Length = 634

 Score =  163 bits (412), Expect = 2e-39
 Identities = 75/103 (72%), Positives = 89/103 (85%)
 Frame = +3

Query: 231 NLKTIQVVPGAKDFIDIVLSKTQRGTPTVVHNGWAIQRIRQFYMRKVKFTQQNWNEKLSA 410
           N K I VVP AKDFID+ LSKTQR TPTV+H  + I RIR FYMRKVKFTQQN++++LS 
Sbjct: 5   NFKKITVVPSAKDFIDLTLSKTQRKTPTVIHKHYQIHRIRHFYMRKVKFTQQNYHDRLSQ 64

Query: 411 ILDEFPKVEDIHPFYADLLNVLYDKDHYKLALGQLNTARNLVD 539
           IL +FPK++DIHPFYADL+N+LYDKDHYKLALGQ+N A+NLVD
Sbjct: 65  ILSDFPKLDDIHPFYADLMNILYDKDHYKLALGQINIAKNLVD 107



EST assemble image


clone accession position
1 HCL066f11_r AV643275 1 485
2 LCL033a06_r AV627859 1 495
3 HCL078g10_r AV643940 3 545
4 LCL091a06_r AV631259 3 265
5 MXL075h11_r BP097451 8 365
6 HCL039h11_r AV641768 8 442
7 HCL043a09_r AV641957 10 500
8 HCL063a09_r AV643060 10 536
9 HCL059b08_r AV642846 11 485
10 HCL047h08_r AV642232 11 237
11 CL06f02_r AV393627 11 341
12 HCL047h01_r AV642228 12 506
13 HCL035c03_r AV641519 12 516
14 HCL042b07_r AV641900 12 528
15 HCL097d11_r AV645049 18 495
16 HCL061a09_r AV642946 19 509
17 CL74a11_r AV396461 19 534
18 CL77a04_r AV397291 20 341
19 HCL039a10_r AV641706 21 471
20 HCL063f10_r AV643094 29 531
21 HCL022d02_r AV640783 37 485
22 HCL096g12_r AV645000 39 314
23 HCL014b11_r AV640318 101 545




Chlamydomonas reinhardtii
Kazusa DNA Research Institute