Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000137A_C02 KCC000137A_c02
(664 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH47855.1| Similar to ribosomal protein L13a [Danio rerio] 127 9e-54
ref|XP_326714.1| probable ribosomal protein l13a [MIPS] [Neurosp... 135 1e-53
ref|XP_208072.2| similar to ribosomal protein L13a; 60S ribosoma... 132 3e-53
gb|AAD54383.1|AF178537_1 ribosomal protein L16a [Emericella nidu... 135 3e-53
ref|NP_012133.1| Homology to rat L13a; Rpl16ap [Saccharomyces ce... 122 2e-51
>gb|AAH47855.1| Similar to ribosomal protein L13a [Danio rerio]
Length = 205
Score = 127 bits (319), Expect(2) = 9e-54
Identities = 65/112 (58%), Positives = 79/112 (70%)
Frame = +2
Query: 233 PRAIFWRTVRGMIPHKTARGAAALERLKAFEGIPHPYDKVKRLVVPDALKVLRLQHGHRN 412
P IFWRTVRGM+PHKT RG AAL+RLK F+GIP PYDK KR+VVP ALK++RL+ +
Sbjct: 78 PSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKRKRMVVPAALKIVRLKPTRKF 137
Query: 413 CKLGDLSASVGWKHQAAVAELEEKRKAKAKAFYVAKKKLVALRSKAAAQVKA 568
LG L+ VGWK+QA A LEEKRK KAK Y KK + L +A V++
Sbjct: 138 ALLGRLAHEVGWKYQAITATLEEKRKEKAKLRYSKKKVEMKLTKQAEKNVES 189
Score = 105 bits (262), Expect(2) = 9e-54
Identities = 49/74 (66%), Positives = 60/74 (80%)
Frame = +1
Query: 19 KTVVIDGRAHMLGRLASVVAKQILAGQQIVVVRAEEITISGGLVRQKMKYDRFLRKRMNT 198
K ++IDGR H+LGRL+++VAKQ+L G +IVVVR E I ISG R K+KY FLRKRMNT
Sbjct: 7 KVLIIDGRGHLLGRLSAIVAKQVLLGHKIVVVRCEGINISGNFYRNKLKYLAFLRKRMNT 66
Query: 199 NPTRGPFHFRAPSR 240
NP+RG +HFRAPSR
Sbjct: 67 NPSRGSYHFRAPSR 80
>ref|XP_326714.1| probable ribosomal protein l13a [MIPS] [Neurospora crassa]
gi|30316294|sp|Q9P720|RL16_NEUCR 60S ribosomal protein
L16 gi|11276756|pir||T48746 probable ribosomal protein
l13a [imported] - Neurospora crassa
gi|7635796|emb|CAB88562.1| probable ribosomal protein
l13a [Neurospora crassa] gi|28923134|gb|EAA32351.1|
probable ribosomal protein l13a [MIPS] [Neurospora
crassa]
Length = 202
Score = 135 bits (339), Expect(2) = 1e-53
Identities = 66/111 (59%), Positives = 81/111 (72%)
Frame = +2
Query: 233 PRAIFWRTVRGMIPHKTARGAAALERLKAFEGIPHPYDKVKRLVVPDALKVLRLQHGHRN 412
P IF++ VRGMIPHKTARGAAALERLK FEG+P PYDK K++VVP AL+VLRLQ G +
Sbjct: 78 PSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKF 137
Query: 413 CKLGDLSASVGWKHQAAVAELEEKRKAKAKAFYVAKKKLVALRSKAAAQVK 565
C +G LS+ VGWK++ V+ LEE+RKAK A+Y KK S+A K
Sbjct: 138 CTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188
Score = 97.4 bits (241), Expect(2) = 1e-53
Identities = 49/73 (67%), Positives = 57/73 (77%), Gaps = 1/73 (1%)
Frame = +1
Query: 25 VVIDGRAHMLGRLASVVAKQILAGQQIVVVRAEEITISGGLVRQKMKYDRFLRKRMNTNP 204
VVIDG+ H+LGRLAS+VAKQ+L GQ+IVVVR E + ISG R K+KY +LRK NP
Sbjct: 8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNP 67
Query: 205 TR-GPFHFRAPSR 240
TR GPFHFRAPSR
Sbjct: 68 TRGGPFHFRAPSR 80
>ref|XP_208072.2| similar to ribosomal protein L13a; 60S ribosomal protein L13a; 23
kD highly basic protein [Homo sapiens]
Length = 317
Score = 132 bits (332), Expect(2) = 3e-53
Identities = 67/111 (60%), Positives = 80/111 (71%)
Frame = +2
Query: 233 PRAIFWRTVRGMIPHKTARGAAALERLKAFEGIPHPYDKVKRLVVPDALKVLRLQHGHRN 412
P IFWRTVRGM+PHKT RG AAL+RLK F+GIP PYDK KR+VVP ALKV+RL+ +
Sbjct: 190 PSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPVALKVVRLKPTRKF 249
Query: 413 CKLGDLSASVGWKHQAAVAELEEKRKAKAKAFYVAKKKLVALRSKAAAQVK 565
LG L+ GWK+QA A LEEKRK KAK Y KK+L+ LR +A V+
Sbjct: 250 AYLGRLAHEFGWKYQAGTATLEEKRKEKAKIHYGKKKQLMRLRKQAEKNVE 300
Score = 98.6 bits (244), Expect(2) = 3e-53
Identities = 48/84 (57%), Positives = 62/84 (73%), Gaps = 5/84 (5%)
Frame = +1
Query: 4 PKKMPKT-----VVIDGRAHMLGRLASVVAKQILAGQQIVVVRAEEITISGGLVRQKMKY 168
PK++ KT +V+DGR H+LGRLA++V ++L G+++VVVR E I ISG R K+KY
Sbjct: 109 PKRLAKTAEVQVLVLDGRGHLLGRLAAIVVNKVLLGRKVVVVRCEGINISGNFYRNKLKY 168
Query: 169 DRFLRKRMNTNPTRGPFHFRAPSR 240
FLRKRMNTN RG +HFRAPSR
Sbjct: 169 LAFLRKRMNTNSYRGSYHFRAPSR 192
>gb|AAD54383.1|AF178537_1 ribosomal protein L16a [Emericella nidulans]
Length = 202
Score = 135 bits (340), Expect(2) = 3e-53
Identities = 70/112 (62%), Positives = 82/112 (72%)
Frame = +2
Query: 233 PRAIFWRTVRGMIPHKTARGAAALERLKAFEGIPHPYDKVKRLVVPDALKVLRLQHGHRN 412
P IF++ VRGMIPHKTARGAAALERLK FEG+P PYDK KR+VVP AL+VLRL+ G +
Sbjct: 78 PSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKRVVVPQALRVLRLRPGRKY 137
Query: 413 CKLGDLSASVGWKHQAAVAELEEKRKAKAKAFYVAKKKLVALRSKAAAQVKA 568
C +G LS VGWK+Q VA LEE+RK K+ A+Y KK A R A AQ A
Sbjct: 138 CTVGRLSHEVGWKYQDVVARLEERRKVKSSAYYERKK--AARRQLAHAQKSA 187
Score = 95.5 bits (236), Expect(2) = 3e-53
Identities = 49/73 (67%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Frame = +1
Query: 25 VVIDGRAHMLGRLASVVAKQILAGQQIVVVRAEEITISGGLVRQKMKYDRFLRKRMNTNP 204
VVIDG+ H+LGRLAS VAKQ+L GQ+IVVVR E + ISG R K+KY +LRK NP
Sbjct: 8 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKITRYNP 67
Query: 205 TR-GPFHFRAPSR 240
TR GPFHFRAPSR
Sbjct: 68 TRGGPFHFRAPSR 80
>ref|NP_012133.1| Homology to rat L13a; Rpl16ap [Saccharomyces cerevisiae]
gi|730452|sp|P26784|R16A_YEAST 60S ribosomal protein
L16-A (L13A) (RP22) gi|626321|pir||S48401 ribosomal
protein L16.e.A, cytosolic - yeast (Saccharomyces
cerevisiae) gi|557790|emb|CAA86145.1| unnamed protein
product [Saccharomyces cerevisiae]
Length = 199
Score = 122 bits (306), Expect(2) = 2e-51
Identities = 63/112 (56%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Frame = +2
Query: 233 PRAIFWRTVRGMIPHKTARGAAALERLKAFEGIPHPYDKVKRLVVPDALKVLRLQHGHRN 412
P IF++ +RGM+ HKTARG AALERLK FEGIP PYDK KR+VVP AL+VLRL+ G +
Sbjct: 76 PSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKY 135
Query: 413 CKLGDLSASVGWKHQAAVAELEEKRKAKAKAFYVAKK---KLVALRSKAAAQ 559
LG LS SVGWK++ VA+LE KRK + +Y K+ K VA + AA+
Sbjct: 136 TTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAE 187
Score = 102 bits (254), Expect(2) = 2e-51
Identities = 51/72 (70%), Positives = 58/72 (79%)
Frame = +1
Query: 25 VVIDGRAHMLGRLASVVAKQILAGQQIVVVRAEEITISGGLVRQKMKYDRFLRKRMNTNP 204
VVIDG+ H++GRLASVVAKQ+L GQ+IVVVRAEE+ ISG R K+KY FLRK N
Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 66
Query: 205 TRGPFHFRAPSR 240
TRGPFHFRAPSR
Sbjct: 67 TRGPFHFRAPSR 78
