KCC000136A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000136A_C01 KCC000136A_c01
CAGGTGAAATGCAGAGTAGGAATAGTCTCGCCTGCGCACATCCTTTTACGCAGAATTTGA
GTTGTGGGCTGGTTCTGGTGCCCCCGTTGCCACTGAGACCGGCGTTGGTTTATCAGAATA
GGATACAGCGTGTCCTGCAGTTAGGCGAGGCAGAGGTCGAGGTTCATTAGCCTTCTCGTC
GTGCATGTTTTGTTTTTCCTTGCATAGAAAGGGAAGCCCCAGTCTTGGCTGTGCGGGCTT
TGAGCTGTTTCATCACTCCCTTTCGTGGTGCTCTGATACGCTGGCCGTGATTCCTGCAAC
ATCGTTTGCGGTACTAATTAATAACCGGGTGGAGTTAACGGGTTCAAATGGAGCGCATTT
ATGTCCGGTGGGGGTGCGCGCGGCTCGACGTCAACGCACGAGGAAGGCTCCGAGAGGACG
TCCGTGAGGTAGAGGAGGTGCAGGTCTCTATGTTGGACAGGCGTAATTACCTGAACATAA
ACCGGCTGGAGAGACCAGGTATGTCTGTTCATTTTGGTGAACGATGGACTGGGGTACAAA
GAATGCAGAATGCCTGCCCGTTGTGCACCTCGCGGCGCGTGGTGGGGCTGCGTGCTGTGC
GTGTACAGCACGTGGCGAGTGCGCAGGAGGGTTCAAGGCGTGGGTGTACGCTTGGAAGGA
AGGCAGACGCTTTTGGCCATGGTAAAGAGCCGTAGCTAGTAATGGTGCTGAGCTGCAGGT
GCACGGGCAGGGCTAGCAGGACGCAGGGCTAACTTGGTCCAGAGTTACAGCCCGGTTGGA
TGCAGGGCTTATACAGGATTAGGTAGGAATTCTTGAGTATGGTAGTGTAGGGTAGCGTTG
CAGTCAGCGTGAAGGGAAGTGCGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000136A_C01 KCC000136A_c01
         (865 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_330331.1| predicted protein [Neurospora crassa] gi|289222...    42  0.010
emb|CAD70732.1| related to hydroxyproline-rich glycoprotein prec...    42  0.010
dbj|BAA34474.2| KIAA0754 protein [Homo sapiens]                        36  0.72
ref|NP_626196.1| hypothetical protein [Streptomyces coelicolor A...    35  1.2
ref|NP_593230.1| sexual differentiation protein Esc1p [Schizosac...    35  1.6

>ref|XP_330331.1| predicted protein [Neurospora crassa] gi|28922293|gb|EAA31535.1|
           predicted protein [Neurospora crassa]
          Length = 590

 Score = 42.4 bits (98), Expect = 0.010
 Identities = 43/161 (26%), Positives = 63/161 (38%), Gaps = 2/161 (1%)
 Frame = -3

Query: 644 PTP*TLLRTRHVLYTHSTQPHHAPRGAQRAGILHSLYPSPSFTKMNRHTWSLQPVYV--Q 471
           PTP  +L T ++  T  TQ           G      P  S    +RH++S  P     +
Sbjct: 362 PTP--ILNTSNLPLTPPTQQ----------GSFSPASPQSSTAGNHRHSFSYFPAAYPPR 409

Query: 470 VITPVQHRDLHLLYLTDVLSEPSSCVDVEPRAPPPDINALHLNPLTPPGY*LVPQTMLQE 291
              P QH+    L  +  ++ PSS     P +PP       +NP  PP Y   P    Q+
Sbjct: 410 PSPPTQHQPATTLP-SPTITSPSSPF---PSSPPA------VNPSAPPSYPSTPAHQQQQ 459

Query: 290 SRPAYQSTTKGSDETAQSPHSQDWGFPFYARKNKTCTTRRL 168
           ++P    TT  S  T  S HS     P ++  + T    +L
Sbjct: 460 AQPTITYTTAPSQPTYSSQHSSPTSTPSFSSSSSTSGATKL 500

>emb|CAD70732.1| related to hydroxyproline-rich glycoprotein precursor [Neurospora
           crassa]
          Length = 589

 Score = 42.4 bits (98), Expect = 0.010
 Identities = 43/161 (26%), Positives = 63/161 (38%), Gaps = 2/161 (1%)
 Frame = -3

Query: 644 PTP*TLLRTRHVLYTHSTQPHHAPRGAQRAGILHSLYPSPSFTKMNRHTWSLQPVYV--Q 471
           PTP  +L T ++  T  TQ           G      P  S    +RH++S  P     +
Sbjct: 362 PTP--ILNTSNLPLTPPTQQ----------GSFSPASPQSSTAGNHRHSFSYFPAAYPPR 409

Query: 470 VITPVQHRDLHLLYLTDVLSEPSSCVDVEPRAPPPDINALHLNPLTPPGY*LVPQTMLQE 291
              P QH+    L  +  ++ PSS     P +PP       +NP  PP Y   P    Q+
Sbjct: 410 PSPPTQHQPATTLP-SPTITSPSSPF---PSSPPA------VNPSAPPSYPSTPAHQQQQ 459

Query: 290 SRPAYQSTTKGSDETAQSPHSQDWGFPFYARKNKTCTTRRL 168
           ++P    TT  S  T  S HS     P ++  + T    +L
Sbjct: 460 AQPTITYTTAPSQPTYSSQHSSPTSTPSFSSSSSTSGATKL 500

>dbj|BAA34474.2| KIAA0754 protein [Homo sapiens]
          Length = 1174

 Score = 36.2 bits (82), Expect = 0.72
 Identities = 64/266 (24%), Positives = 88/266 (33%), Gaps = 12/266 (4%)
 Frame = -2

Query: 831  PTLPYSRIPT*S-CISPASNRAVTLDQVSPASC*PCPCTCSSAPLLATALYHGQKRLPSF 655
            PT P + +PT     SPA+      +  SPA+  P P      P    A     +   S 
Sbjct: 799  PTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTP----EEPTSPAAAVPTPEEPTSP 854

Query: 654  QAYTHALNPPAHSPRAVHAQHAAPPRAARCTTGRHSAFFVPQSIVHQNEQTYLVS---PA 484
             A       PA    AV         AA   T    AF  P     +   +  V+   P 
Sbjct: 855  AAAVPTPEEPASPAAAVPTPEEPASPAAAVPTPEEPAFPAPAVPTPEESASAAVAVPTPE 914

Query: 483  GLCSGNYACPT*RPAPPLPHGRPLGAFLVR*RRAARTPT-GHKCAPFEPVNSTRLLISTA 307
               S   A PT  PA        +         AA  PT     A  E   S    + T+
Sbjct: 915  ESASPAAAVPT--PAESASFAAVVATLEEPTSPAASVPTPAAMVATLEEFTSPAASVPTS 972

Query: 306  NDVAGITASVSEHHERE**NSSKPAQPRLGLPFLCKEKQN----MHDEKANEPR---PLP 148
             + A + A+VS        N  +P  P   +P L +   +    +  E+ + P    P P
Sbjct: 973  EEPASLAAAVS--------NPEEPTSPAAAVPTLEEPTSSAAAVLTPEELSSPAASVPTP 1024

Query: 147  RLTAGHAVSYSDKPTPVSVATGAPEP 70
               A  A + S+   P S A   P P
Sbjct: 1025 EEPASPAAAVSNLEEPASPAAAVPTP 1050

>ref|NP_626196.1| hypothetical protein [Streptomyces coelicolor A3(2)]
           gi|7479838|pir||T36003 hypothetical protein SCC22.13c -
           Streptomyces coelicolor gi|5459398|emb|CAB50756.1|
           hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 259

 Score = 35.4 bits (80), Expect = 1.2
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 584 HHAPRGAQRAGILHSLYPSPSFTKM--NRH-TWSLQPVYVQVITPVQHRDLH 438
           H   R    AG+LH  Y SP        RH TW+ Q ++ + +TPV  R+LH
Sbjct: 74  HARLRAEPLAGLLHCTYLSPDTVADPDQRHLTWAHQQLFKRTVTPVTRRELH 125

>ref|NP_593230.1| sexual differentiation protein Esc1p [Schizosaccharomyces pombe]
           gi|416968|sp|Q04635|ESC1_SCHPO Protein esc1
           gi|283069|pir||S28066 sexual differentiation protein
           Esc1p - fission yeast  (Schizosaccharomyces pombe)
           gi|4950|emb|CAA49186.1| Esc1 [Schizosaccharomyces pombe]
           gi|1204238|emb|CAA93587.1| esc1 [Schizosaccharomyces
           pombe]
          Length = 413

 Score = 35.0 bits (79), Expect = 1.6
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = -2

Query: 822 PYSRIPT*SCISPASNRAVTLDQVSPASC*PCPCTCSSAPLLATALY-HGQKRLPSFQAY 646
           P S IP      P ++        +P S    P T +S PL   + + HGQ RLP     
Sbjct: 13  PTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSYPLSTPSSFQHGQTRLPPI--- 69

Query: 645 THALNPPAHSPRAVHAQHAAP----PRAARCTTGRH 550
            + L  P + P+  H+  AAP    P +A  +T  H
Sbjct: 70  -NCLAEPFNRPQPWHSNSAAPASSSPTSATLSTAAH 104



EST assemble image


clone accession position
1 HC012f08_r AV632794 1 541
2 LC010f07_r AV619604 442 973




Chlamydomonas reinhardtii
Kazusa DNA Research Institute