KCC000134A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000134A_C01 KCC000134A_c01
GCTCATATTTTCATGTGACCAGGCGCGCGCCAGCCCGGAAACGACACAACCGCTTTGCAA
TTTCTTCGCTCCGGAAGACCAAGATGAATAAAGCTTGTTACAAACTCCATCGATTGACAG
CTTAGCTTATTGTAATCTAGCGATGCAGCCGACCGCTCTTGGAGTGTGCACAGGGCCATA
ACGCAGCTGGCCGCAGCTGCGGCACGTTCTAGCGGATTGCTGGGCCAAGCGTTGGGTCTG
CGTGCACTTGCATCGAGATCTTTGAGCTGGGACACCGGCGATTGTCGCTTAACATCGCGC
CGCAGTAACCGGTGGCTGCAGCATTTCGCTGACAGATGGGAGCCTCGGCTTCGCTGCCTG
AGAAGGTCCTGATATGTGCCCAAAAGAATGACTACTGTGGATTTCAGGCGCTGGTGGATG
ACTTTGGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000134A_C01 KCC000134A_c01
         (430 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA22868.1| bHLH-PAS transcription factor [Drosophila melano...    36  0.14
ref|NP_731308.1| tango CG11987-PA [Drosophila melanogaster] gi|7...    36  0.14
sp|O15945|ARNT_DROME Aryl hydrocarbon receptor nuclear transloca...    36  0.14
ref|NP_616091.1| predicted protein [Methanosarcina acetivorans s...    33  0.70
ref|NP_662822.1| ArsA ATPase family protein [Chlorobium tepidum ...    33  1.2

>dbj|BAA22868.1| bHLH-PAS transcription factor [Drosophila melanogaster]
          Length = 642

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 15/35 (42%), Positives = 19/35 (53%)
 Frame = -2

Query: 420 HPPAPEIHSSHSFGHISGPSQAAKPRLPSVSEMLQ 316
           HPP P  H  H   H  GP+ A +P+    S+MLQ
Sbjct: 586 HPPHPTAHPHHPHAHPGGPAGAGQPQGQEFSDMLQ 620

>ref|NP_731308.1| tango CG11987-PA [Drosophila melanogaster]
           gi|7299130|gb|AAF54329.1| CG11987-PA [Drosophila
           melanogaster] gi|17862498|gb|AAL39726.1| LD32037p
           [Drosophila melanogaster]
          Length = 642

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 15/35 (42%), Positives = 19/35 (53%)
 Frame = -2

Query: 420 HPPAPEIHSSHSFGHISGPSQAAKPRLPSVSEMLQ 316
           HPP P  H  H   H  GP+ A +P+    S+MLQ
Sbjct: 586 HPPHPTAHPHHPHAHPGGPAGAGQPQGQEFSDMLQ 620

>sp|O15945|ARNT_DROME Aryl hydrocarbon receptor nuclear translocator homolog (dARNT)
           (Tango protein) (Hypoxia-inducible factor 1 beta)
           gi|2688932|gb|AAB88882.1| basic helix-loop-helix PAS
           protein [Drosophila melanogaster]
           gi|5052000|gb|AAD38396.1| hypoxia-inducible factor 1b
           [Drosophila melanogaster]
          Length = 644

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 15/35 (42%), Positives = 19/35 (53%)
 Frame = -2

Query: 420 HPPAPEIHSSHSFGHISGPSQAAKPRLPSVSEMLQ 316
           HPP P  H  H   H  GP+ A +P+    S+MLQ
Sbjct: 588 HPPHPTAHPHHPHAHPGGPAGAGQPQGQEFSDMLQ 622

>ref|NP_616091.1| predicted protein [Methanosarcina acetivorans str. C2A]
           gi|19914983|gb|AAM04571.1| predicted protein
           [Methanosarcina acetivorans str. C2A]
          Length = 176

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 26/79 (32%), Positives = 36/79 (44%), Gaps = 3/79 (3%)
 Frame = -3

Query: 419 IHQRLKSTVVILLGTYQDLLRQRSR-GSHLSAKCCSHRLLRRDVKRQSPVS--QLKDLDA 249
           +H+   + V +LLGT  DLL   S     +  K CS  L   D KRQ  +S  ++ D + 
Sbjct: 94  LHEGENNAVFVLLGTMNDLLLAFSELRKFIEEKPCSELLAYSDSKRQGILSLFRITDAEI 153

Query: 248 SARRPNAWPSNPLERAAAA 192
            A      P   +ER A A
Sbjct: 154 EASGEEHIPELVIERVALA 172

>ref|NP_662822.1| ArsA ATPase family protein [Chlorobium tepidum TLS]
           gi|22654223|sp|Q46366|ARSA_CHLTE Putative arsenical
           pump-driving ATPase (Arsenite-translocating ATPase)
           (Arsenical resistance ATPase) (Arsenite-transporting
           ATPase) gi|21647969|gb|AAM73164.1| ArsA ATPase family
           protein [Chlorobium tepidum TLS]
          Length = 405

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +3

Query: 222 GPSVGSACTCIEIFELGHRRLSLNIAPQ*PVAAAFR*QMGASASLPEKVLICAQKNDY 395
           G +  SA T + + E+GHR L L+  P   ++ +F  Q+GA  +  ++ L   + N Y
Sbjct: 13  GKTSVSAATAVRLSEMGHRTLVLSTDPAHSLSDSFNIQLGAEPTKIKENLHAIEVNPY 70



EST assemble image


clone accession position
1 HCL054g02_r AV642612 1 502
2 CL06d02_r AV393624 77 526




Chlamydomonas reinhardtii
Kazusa DNA Research Institute