Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000128A_C01 KCC000128A_c01
(613 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00064368.1| COG0776: Bacterial nucleoid DNA-binding prote... 99 5e-20
ref|NP_815267.1| DNA-binding protein HU [Enterococcus faecalis V... 99 5e-20
ref|NP_717406.1| DNA-binding protein, HU family [Shewanella onei... 99 6e-20
ref|ZP_00068345.1| COG0776: Bacterial nucleoid DNA-binding prote... 98 8e-20
ref|NP_623981.1| Bacterial nucleoid DNA-binding protein [Thermoa... 97 1e-19
>ref|ZP_00064368.1| COG0776: Bacterial nucleoid DNA-binding protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 101
Score = 99.0 bits (245), Expect = 5e-20
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2
Query: 152 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 331
K +LV+++A GLTK A + D++ IE+AL NG++V ++GFG FEVR+RAAR+GRN
Sbjct: 14 KQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGRN 73
Query: 332 PSTGAVLQIAASKAPVFKASVGLKDAV 412
P TG +QIAASK P FK LKDAV
Sbjct: 74 PQTGEEIQIAASKVPAFKPGKALKDAV 100
>ref|NP_815267.1| DNA-binding protein HU [Enterococcus faecalis V583]
gi|29343575|gb|AAO81337.1| DNA-binding protein HU
[Enterococcus faecalis V583]
Length = 91
Score = 99.0 bits (245), Expect = 5e-20
Identities = 48/87 (55%), Positives = 62/87 (71%)
Frame = +2
Query: 152 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 331
KA+L+E +A+ GLTK A A D++ I++ L G++V ++GFG FEVRERAAR+GRN
Sbjct: 4 KAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARKGRN 63
Query: 332 PSTGAVLQIAASKAPVFKASVGLKDAV 412
P TG +QIAASK P FK LKDAV
Sbjct: 64 PQTGQEIQIAASKVPAFKPGKALKDAV 90
>ref|NP_717406.1| DNA-binding protein, HU family [Shewanella oneidensis MR-1]
gi|24347626|gb|AAN54850.1|AE015624_3 DNA-binding
protein, HU family [Shewanella oneidensis MR-1]
Length = 90
Score = 98.6 bits (244), Expect = 6e-20
Identities = 47/88 (53%), Positives = 63/88 (71%)
Frame = +2
Query: 152 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 331
K++L+E IA+ ++K A +A DS I + + L GD++++VGFGTFEVRERA R GRN
Sbjct: 3 KSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTGRN 62
Query: 332 PSTGAVLQIAASKAPVFKASVGLKDAVN 415
P TG ++IAA+K P FKA LKDAVN
Sbjct: 63 PQTGEEIKIAAAKIPAFKAGKALKDAVN 90
>ref|ZP_00068345.1| COG0776: Bacterial nucleoid DNA-binding protein [Microbulbifer
degradans 2-40]
Length = 90
Score = 98.2 bits (243), Expect = 8e-20
Identities = 49/88 (55%), Positives = 64/88 (72%)
Frame = +2
Query: 152 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 331
K++L+EAIA ++K A +A D++ I +AL NGD+V +VGFGTF V+ERAAR GRN
Sbjct: 3 KSELIEAIAASADISKAAAGRALDAVTESIGEALKNGDQVALVGFGTFLVKERAARTGRN 62
Query: 332 PSTGAVLQIAASKAPVFKASVGLKDAVN 415
P TGA ++IAA+K P FK LKDAVN
Sbjct: 63 PQTGAPIEIAAAKIPSFKPGKALKDAVN 90
>ref|NP_623981.1| Bacterial nucleoid DNA-binding protein [Thermoanaerobacter
tengcongensis] gi|20517460|gb|AAM25585.1| Bacterial
nucleoid DNA-binding protein [Thermoanaerobacter
tengcongensis]
Length = 91
Score = 97.4 bits (241), Expect = 1e-19
Identities = 51/88 (57%), Positives = 63/88 (70%)
Frame = +2
Query: 152 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 331
KA+LV IA + LTK A KA ++ I +++AL NGD+V +VGFGTFEVRERA R+GRN
Sbjct: 3 KAELVAKIAEKSELTKKDAEKALNAFIEAVQEALKNGDKVQLVGFGTFEVRERAERKGRN 62
Query: 332 PSTGAVLQIAASKAPVFKASVGLKDAVN 415
P T + I ASKAP+FKA LKD VN
Sbjct: 63 PQTREEITIPASKAPIFKAGKALKDLVN 90
