Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000117A_C05 KCC000117A_c05
(1184 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P49625|RL5_ORYSA 60S RIBOSOMAL PROTEIN L5 123 5e-64
gb|AAQ72789.1| 60S ribosomal protein L5 [Cucumis sativus] 120 2e-63
dbj|BAC06272.1| putative 60S ribosomal protein L5 [Oryza sativa ... 125 7e-62
ref|NP_198790.1| 60S ribosomal protein L5 (RPL5B) [Arabidopsis t... 118 4e-61
dbj|BAC06273.1| putative 60S ribosomal protein L5 [Oryza sativa ... 123 7e-61
>sp|P49625|RL5_ORYSA 60S RIBOSOMAL PROTEIN L5
Length = 304
Score = 123 bits (308), Expect(4) = 5e-64
Identities = 71/136 (52%), Positives = 84/136 (61%), Gaps = 10/136 (7%)
Frame = +1
Query: 214 QIVRSTIKGDIVEAAAYAHELPDYGLECGLTNYAAW----------LLRFWGGPXAGCPP 363
QIV +TI GDIV AAAY+HELP YGLE GLTNYAA +L+ G
Sbjct: 64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRG-------- 115
Query: 364 GF*PSSAWTRHYPGQTEPDGEDYNIEPVEEGPRPFFCLLDTGLKRTSTGSKVFGCLKGAL 543
+ Y G E GEDY +EP +E RPF LLD GL RT+TG++VFG LKGAL
Sbjct: 116 -------LDQEYEGNIEATGEDYYVEPADER-RPFRALLDVGLIRTTTGNRVFGALKGAL 167
Query: 544 DGGLDIPHNEKRLVGY 591
DGGLDIPH++KR G+
Sbjct: 168 DGGLDIPHSDKRFAGF 183
Score = 105 bits (261), Expect(4) = 5e-64
Identities = 50/117 (42%), Positives = 77/117 (65%), Gaps = 7/117 (5%)
Frame = +3
Query: 594 ERSGKKMDAEVLKKYIFGGHVAEYMEEMEEEEPEKYMKHFAKYVEADLSGGDLEDKYAEV 773
++ K++D+++ +KYI+GGHVA+YM M EEEPEK+ HF++Y++ + +E Y +V
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKV 243
Query: 774 HAAIREKPVKEKAARTKPAAAKRWHTPKLTLEQRRENLKQKLAAL-------QDDEE 923
HAAIR P K+ + +PA KR++ KLT EQR+ +L ++L AL DDEE
Sbjct: 244 HAAIRADPYHAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEE 300
Score = 50.8 bits (120), Expect(4) = 5e-64
Identities = 22/26 (84%), Positives = 23/26 (87%)
Frame = +3
Query: 132 LVKQDKNKYNTPKYRLVVRFTNRDIT 209
L QDKNKYNTPKYR VVRFTN+DIT
Sbjct: 37 LTNQDKNKYNTPKYRFVVRFTNKDIT 62
Score = 31.2 bits (69), Expect(4) = 5e-64
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +2
Query: 86 RRRREGKTDYRARLR 130
+RRR+GKTDYRAR+R
Sbjct: 22 KRRRQGKTDYRARIR 36
>gb|AAQ72789.1| 60S ribosomal protein L5 [Cucumis sativus]
Length = 302
Score = 120 bits (300), Expect(4) = 2e-63
Identities = 67/131 (51%), Positives = 81/131 (61%), Gaps = 5/131 (3%)
Frame = +1
Query: 214 QIVRSTIKGDIVEAAAYAHELPDYGLECGLTNYAAWLLRFWGGPXAGCPPGF*PSSA--- 384
QI+ ++I GD+V A+AY+HELP YGLE GLTNYAA A C
Sbjct: 63 QIISASIAGDLVLASAYSHELPQYGLEVGLTNYAA----------AYCTGLLLARRVLKM 112
Query: 385 --WTRHYPGQTEPDGEDYNIEPVEEGPRPFFCLLDTGLKRTSTGSKVFGCLKGALDGGLD 558
Y G E GEDY++EP + RPF LLD GL RT+TG++VFG LKGALDGGLD
Sbjct: 113 LEMDAEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIRTTTGNRVFGALKGALDGGLD 171
Query: 559 IPHNEKRLVGY 591
IPH++KR GY
Sbjct: 172 IPHSDKRFAGY 182
Score = 107 bits (268), Expect(4) = 2e-63
Identities = 50/118 (42%), Positives = 79/118 (66%), Gaps = 7/118 (5%)
Frame = +3
Query: 591 HERSGKKMDAEVLKKYIFGGHVAEYMEEMEEEEPEKYMKHFAKYVEADLSGGDLEDKYAE 770
+ ++G+++D EV +KYIFGGHVA YM + E+EPEKY HF++Y++ + +LE Y +
Sbjct: 182 YAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKK 241
Query: 771 VHAAIREKPVKEKAARTKPAAAKRWHTPKLTLEQRRENLKQKLAAL-------QDDEE 923
VHAAIR P+ +K+ + +P A KR++ KLT ++R+ L ++L AL DD+E
Sbjct: 242 VHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSAADGDDDDDE 299
Score = 47.4 bits (111), Expect(4) = 2e-63
Identities = 20/26 (76%), Positives = 23/26 (87%)
Frame = +3
Query: 132 LVKQDKNKYNTPKYRLVVRFTNRDIT 209
L+ QDKNKYNTPKYR VVR +N+DIT
Sbjct: 36 LINQDKNKYNTPKYRFVVRTSNKDIT 61
Score = 32.7 bits (73), Expect(4) = 2e-63
Identities = 15/32 (46%), Positives = 22/32 (67%)
Frame = +2
Query: 35 RSSRPRPYFSPLPESSTRRRREGKTDYRARLR 130
++ + + YF + +RRREGKTDYRAR+R
Sbjct: 5 KAQKTKAYFKRY-QVKFKRRREGKTDYRARIR 35
>dbj|BAC06272.1| putative 60S ribosomal protein L5 [Oryza sativa (japonica
cultivar-group)] gi|22093591|dbj|BAC06887.1| putative
60S ribosomal protein L5 [Oryza sativa (japonica
cultivar-group)]
Length = 304
Score = 125 bits (314), Expect(4) = 7e-62
Identities = 72/131 (54%), Positives = 83/131 (62%), Gaps = 5/131 (3%)
Frame = +1
Query: 214 QIVRSTIKGDIVEAAAYAHELPDYGLECGLTNYAAWLLRFWGGPXAGCPPGF*PSSAWT- 390
QIV +TI GDIV AAAY+HELP YGLE GLTNYAA A C T
Sbjct: 64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAA----------AYCTGLLLARRVLTL 113
Query: 391 ----RHYPGQTEPDGEDYNIEPVEEGPRPFFCLLDTGLKRTSTGSKVFGCLKGALDGGLD 558
+ Y G E GEDY +EP +E RPF LLD GL RT+TG++VFG LKGALDGGLD
Sbjct: 114 RGLDQEYEGNVEATGEDYYVEPADER-RPFRALLDVGLIRTTTGNRVFGALKGALDGGLD 172
Query: 559 IPHNEKRLVGY 591
IPH++KR G+
Sbjct: 173 IPHSDKRFAGF 183
Score = 106 bits (264), Expect(4) = 7e-62
Identities = 50/117 (42%), Positives = 77/117 (65%), Gaps = 7/117 (5%)
Frame = +3
Query: 594 ERSGKKMDAEVLKKYIFGGHVAEYMEEMEEEEPEKYMKHFAKYVEADLSGGDLEDKYAEV 773
++ K++D+++ +KYI+GGHVA+YM M EEEPEK+ HF++Y++ + +E Y +V
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKV 243
Query: 774 HAAIREKPVKEKAARTKPAAAKRWHTPKLTLEQRRENLKQKLAAL-------QDDEE 923
HAAIR P K+ + +PA KR++ KLT EQR+ +L ++L AL DDEE
Sbjct: 244 HAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEE 300
Score = 39.7 bits (91), Expect(4) = 7e-62
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 132 LVKQDKNKYNTPKYRLVVRFTNRDIT 209
L QDKNKYNTPKYR V TN+DIT
Sbjct: 40 LTNQDKNKYNTPKYRFV---TNKDIT 62
Score = 31.6 bits (70), Expect(4) = 7e-62
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 32 LRSSRPRPYFSPLPESSTRRRREGKTDYRARLR 130
+++ + YF + +RRR+GKTDYRAR+R
Sbjct: 8 VKTQKTHAYFKRF-QVKFKRRRQGKTDYRARIR 39
>ref|NP_198790.1| 60S ribosomal protein L5 (RPL5B) [Arabidopsis thaliana]
gi|19884108|sp|P49227|RL5_ARATH 60S ribosomal protein L5
gi|10177974|dbj|BAB11380.1| 60S ribosomal protein L5
[Arabidopsis thaliana] gi|19310482|gb|AAL84975.1|
AT5g39740/MKM21_30 [Arabidopsis thaliana]
gi|20260448|gb|AAM13122.1| ribosomal protein L5 - like
[Arabidopsis thaliana] gi|30984512|gb|AAP42719.1|
At5g39740 [Arabidopsis thaliana]
Length = 301
Score = 118 bits (296), Expect(4) = 4e-61
Identities = 67/131 (51%), Positives = 81/131 (61%), Gaps = 5/131 (3%)
Frame = +1
Query: 214 QIVRSTIKGDIVEAAAYAHELPDYGLECGLTNYAAWLLRFWGGPXAGCPPGF*PSSAWTR 393
QIV ++I GDIV+A+AYAHELP YGL GLTNYAA A C
Sbjct: 63 QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAA----------AYCTGLLLARRVLKM 112
Query: 394 -----HYPGQTEPDGEDYNIEPVEEGPRPFFCLLDTGLKRTSTGSKVFGCLKGALDGGLD 558
Y G E GED+++EP + RPF LLD GL RT+TG++VFG LKGALDGGLD
Sbjct: 113 LEMDDEYEGNVEATGEDFSVEPTDSR-RPFRALLDVGLIRTTTGNRVFGALKGALDGGLD 171
Query: 559 IPHNEKRLVGY 591
IPH++KR G+
Sbjct: 172 IPHSDKRFAGF 182
Score = 95.9 bits (237), Expect(4) = 4e-61
Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 9/118 (7%)
Frame = +3
Query: 597 RSGKKMDAEVLKKYIFGGHVAEYMEEMEEEEPEKYMKHFAKYVEADLSGGDLEDKYAEVH 776
+ K++DAE+ + YI+GGHV+ YM+ + E+EPEK HF+ Y++ + +E+ Y +VH
Sbjct: 184 KENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVH 243
Query: 777 AAIREKPVKEKAARTKPAAAKRWHTPKLTLEQRRENLKQKLAAL---------QDDEE 923
AAIR +P +K ++ P KR++ KLT E+R+ L +++ AL +DDEE
Sbjct: 244 AAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDEDDEE 301
Score = 50.1 bits (118), Expect(4) = 4e-61
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 132 LVKQDKNKYNTPKYRLVVRFTNRDI 206
L+ QDKNKYNTPKYR VVRFTN+DI
Sbjct: 36 LINQDKNKYNTPKYRFVVRFTNKDI 60
Score = 35.8 bits (81), Expect(4) = 4e-61
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 26 VTLRSSRPRPYFSPLPESSTRRRREGKTDYRARLR 130
V ++SS+ YF + RRRR+GKTDYRAR+R
Sbjct: 2 VFVKSSKSNAYFKRY-QVKFRRRRDGKTDYRARIR 35
>dbj|BAC06273.1| putative 60S ribosomal protein L5 [Oryza sativa (japonica
cultivar-group)] gi|22093592|dbj|BAC06888.1| putative
60S ribosomal protein L5 [Oryza sativa (japonica
cultivar-group)]
Length = 301
Score = 123 bits (308), Expect(4) = 7e-61
Identities = 71/136 (52%), Positives = 84/136 (61%), Gaps = 10/136 (7%)
Frame = +1
Query: 214 QIVRSTIKGDIVEAAAYAHELPDYGLECGLTNYAAW----------LLRFWGGPXAGCPP 363
QIV +TI GDIV AAAY+HELP YGLE GLTNYAA +L+ G
Sbjct: 61 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRG-------- 112
Query: 364 GF*PSSAWTRHYPGQTEPDGEDYNIEPVEEGPRPFFCLLDTGLKRTSTGSKVFGCLKGAL 543
+ Y G E GEDY +EP +E RPF LLD GL RT+TG++VFG LKGAL
Sbjct: 113 -------LDQEYEGNIEATGEDYYVEPADER-RPFRALLDVGLIRTTTGNRVFGALKGAL 164
Query: 544 DGGLDIPHNEKRLVGY 591
DGGLDIPH++KR G+
Sbjct: 165 DGGLDIPHSDKRFAGF 180
Score = 105 bits (262), Expect(4) = 7e-61
Identities = 50/117 (42%), Positives = 77/117 (65%), Gaps = 7/117 (5%)
Frame = +3
Query: 594 ERSGKKMDAEVLKKYIFGGHVAEYMEEMEEEEPEKYMKHFAKYVEADLSGGDLEDKYAEV 773
++ K++D+++ +KYI+GGHVA+YM M EEEPEK+ HF++Y++ + +E Y +V
Sbjct: 181 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKV 240
Query: 774 HAAIREKPVKEKAARTKPAAAKRWHTPKLTLEQRRENLKQKLAAL-------QDDEE 923
HAAIR P K+ + +PA KR++ KLT EQR+ +L ++L AL DDEE
Sbjct: 241 HAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEE 297
Score = 39.7 bits (91), Expect(4) = 7e-61
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 132 LVKQDKNKYNTPKYRLVVRFTNRDIT 209
L QDKNKYNTPKYR V TN+DIT
Sbjct: 37 LTNQDKNKYNTPKYRFV---TNKDIT 59
Score = 31.2 bits (69), Expect(4) = 7e-61
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +2
Query: 86 RRRREGKTDYRARLR 130
+RRR+GKTDYRAR+R
Sbjct: 22 KRRRQGKTDYRARIR 36
