KCC000115A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000115A_C01 KCC000115A_c01
GCTAAACTTCCACTTGCTTCTATCCTCACTTCTTTGCCTACTCCGCACCCGTTCGTCTTT
CGGCGACCAGTCAATCTTTGAAGATGGCGTCTTCCACTATTGTGATGGGCGTTGCTGCCC
TGGCCTTCTGCACCTGGGCCGTCTCGCTGGCCGGCCTCGCTTCCGTCCAGGAGCAGTGCA
CCCCTGACTGGAGCGACATGATTGGTGTGCGCGTGAACGGCTTCTCCACTGGCCTGGCCT
GCTACACCTTCTTCCGCTACTATTGGTTCATCGTGAGCCTTGAGTTCGCCCTGCATTGTC
GGCGTTGCCGGCGTCCTGGCCACCGGCGCCTACGCCAAGTTCCGCAACTCCTTCCTGGGC
CTGATCTGCGTGGCCACCCTGCTGTACATCCAGATGTCCGACGCCACCCTGACCCTGGAC
TCCCTGACCGCTGAGTCCGGTGGCCAGCTCAAGAACCGCGTGCGCACCTGGATCGCCGGC
TCCATCATGACCGCCGCCGTCAACTGCTTCCTGATCATCGCCCTGGGCATGACCGAGGCC
CAGGTGGAGGCTATCTCCGGCGAGAAGGCCACCGCTGTTTAATGCGCCTGGTGCGTAGTG
TTACGCGAGTGTGAGCAGCTGACCTGATGAGCGTGACCCACTTTGCCGCTGCCATTGTGC
GGTGGCCTGACCTGACTGAGTGACATCTAAATTTGGGCTGTTTCTTATTGCGCATCCGCG
AATGACCTCTCGGACCAACTGACGGAAAATAACGAGCGTGGTGGACATCCTCCTGCGACA
CGAGCGTTGCGTGGCCACTTAACGTAGCGTGCGTGTCGAAGACGTTTATACCCGGGGCTG
ATGGAGGTCATGCGGTGGCCCCAGGGCGGGAAGTACATACGTGCTAGATTGCTATGTGCT
AGCAATTCATGCTGAATAAATGAGGGATTGAGGCGGTGGGCTGGCTAGTGGCCACACTAC
AGGAGTGTGCGCGCACGAGACGCGGCAAGCGGCAAGGCTATATCTTGTAAGCATTTTGTC
GAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000115A_C01 KCC000115A_c01
         (1023 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB03282.1| EBNA-1 [Cynomolgus Epstein-Barr Virus Si-IIA]          62  1e-08
ref|NP_039875.1| nuclear antigen EBNA1 [Human herpesvirus 4] gi|...    60  8e-08
dbj|BAB03281.1| EBNA-1 [Cynomolgus Epstein-Barr Virus TsB-B6]          57  4e-07
emb|CAE05204.1| OSJNBa0070C17.11 [Oryza sativa (japonica cultiva...    55  1e-06
sp|Q9FPQ6|GP1_CHLRE Vegetative cell wall protein gp1 precursor (...    52  1e-05

>dbj|BAB03282.1| EBNA-1 [Cynomolgus Epstein-Barr Virus Si-IIA]
          Length = 588

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 59/166 (35%), Positives = 66/166 (39%), Gaps = 5/166 (3%)
 Frame = -1

Query: 588 GALNSGGLLAGDSLHLGLGHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQ---GV 418
           GA  +GG  AG S   G G A G       G G  GAG  GA       TG SG    G 
Sbjct: 137 GAGGAGGSGAGGS---GAGGAGGSGAGGAGGSGAGGAGGSGAVGAGGSGTGGSGAVGAGG 193

Query: 417 QGQGGVGHLDVQQGGHADQAQEGVAELGV-GAGGQDAGNADNAGRTQGSR*TNSSGRRCS 241
            G GG G +     G       G    G  GAGG  AG A  +G   G     S GR  S
Sbjct: 194 SGAGGSGAVGAGGSGAGGSGAVGAGGSGAGGAGGSGAGGAGGSGGGGGRGRGGSRGRGGS 253

Query: 240 R-PGQWRSRSRAHQSCRSSQGCTAPGRKRGRPARRPRCRRPGQQRP 106
           R  G  R R  +    R   G    GR RGR   R +  R G++RP
Sbjct: 254 RGRGGSRGRGGSRGRGRGRGGSRGRGRGRGRGRGRGQGPRQGEKRP 299

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 65/195 (33%), Positives = 72/195 (36%), Gaps = 12/195 (6%)
 Frame = -1

Query: 588 GALNSGGLLAGDSLHLGLGHAQGDDQEAVDGGGHDGAGDPGA------HAVLELATGLSG 427
           GA  +GG  AGDS   G G A G        GG  G+G  GA       A    A G  G
Sbjct: 124 GAGGAGGSGAGDS---GAGGAGGSGAGGSGAGGAGGSGAGGAGGSGAGGAGGSGAVGAGG 180

Query: 426 QGVQGQGGVGHLDVQQGGHADQAQEGVAELG---VGAGGQDAGNADNAGRTQGSR*TNSS 256
            G  G G VG      GG       G    G   VGAGG  AG A  +G   G+  +   
Sbjct: 181 SGTGGSGAVGAGGSGAGGSGAVGAGGSGAGGSGAVGAGGSGAGGAGGSG-AGGAGGSGGG 239

Query: 255 GRRCSRPGQWRSRSRAHQSCRSSQGCTAPGRKRGRPARRPRCRRPGQ---QRPSQ*WKTP 85
           G R     + R  SR     R   G    GR RG    R R R  G+   Q P Q  K P
Sbjct: 240 GGRGRGGSRGRGGSRGRGGSRGRGGSRGRGRGRGGSRGRGRGRGRGRGRGQGPRQGEKRP 299

Query: 84  SSKIDWSPKDERVRS 40
            S    S      RS
Sbjct: 300 RSPSGSSSSGSSSRS 314

 Score = 37.4 bits (85), Expect = 0.42
 Identities = 26/82 (31%), Positives = 28/82 (33%)
 Frame = -1

Query: 498 GGGHDGAGDPGAHAVLELATGLSGQGVQGQGGVGHLDVQQGGHADQAQEGVAELGVGAGG 319
           GG   GAG  GA       +G  G G  G GG G  D   GG       G    G G  G
Sbjct: 104 GGSGGGAGGSGAGG-----SGAGGSGAGGAGGSGAGDSGAGGAGGSGAGGSGAGGAGGSG 158

Query: 318 QDAGNADNAGRTQGSR*TNSSG 253
                   AG   GS    + G
Sbjct: 159 AGGAGGSGAGGAGGSGAVGAGG 180

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 31/95 (32%), Positives = 34/95 (35%), Gaps = 1/95 (1%)
 Frame = -1

Query: 534 GHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQGVQGQGGVGHLDVQQGGHADQAQ 355
           G A G       G G  G+G  G+ A      G SG G  G GG G       G      
Sbjct: 100 GGAGGGSGGGAGGSGAGGSGAGGSGAG---GAGGSGAGDSGAGGAGGSGAGGSGAGGAGG 156

Query: 354 EGVAELGVGAGGQDAGNADNAGRT-QGSR*TNSSG 253
            G      GAGG  AG A  +G    G   T  SG
Sbjct: 157 SGAG----GAGGSGAGGAGGSGAVGAGGSGTGGSG 187

>ref|NP_039875.1| nuclear antigen EBNA1 [Human herpesvirus 4]
           gi|119110|sp|P03211|EBN1_EBV EBNA-1 nuclear protein
           gi|73987|pir||QQBE31 nuclear antigen EBNA1 - human
           herpesvirus 4 gi|1334880|emb|CAA24816.1| BKRF1 encodes
           EBNA-1 protein, latent cycle gene. [Human herpesvirus 4]
           gi|23893623|emb|CAD53427.1| EBNA-1 protein [Human
           herpesvirus 4] gi|30407699|gb|AAO61295.1| EBNA-1 [BAC
           cloning vector pEBAC190G]
          Length = 641

 Score = 59.7 bits (143), Expect = 8e-08
 Identities = 51/152 (33%), Positives = 55/152 (35%)
 Frame = -1

Query: 588 GALNSGGLLAGDSLHLGLGHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQGVQGQ 409
           G   +GG  AG +   G G A          GG  GAG  G         G  G G  G 
Sbjct: 233 GGAGAGGAGAGGAGAGGAGGAGAGGAGGAGAGGAGGAGAGGGAGGAGAGGGAGGAGAGGA 292

Query: 408 GGVGHLDVQQGGHADQAQEGVAELGVGAGGQDAGNADNAGRTQGSR*TNSSGRRCSRPGQ 229
           GG G      G  A  A    A  G GAGG  AG         G R    SG R  R G 
Sbjct: 293 GGAG-AGGAGGAGAGGAGGAGAGGGAGAGGAGAGGGGRGRGGSGGRGRGGSGGR-GRGGS 350

Query: 228 WRSRSRAHQSCRSSQGCTAPGRKRGRPARRPR 133
              R R  +  R      A GR RGR  +RPR
Sbjct: 351 GGRRGRGRERARGGSRERARGRGRGRGEKRPR 382

 Score = 43.1 bits (100), Expect = 0.008
 Identities = 40/100 (40%), Positives = 41/100 (41%)
 Frame = -1

Query: 588 GALNSGGLLAGDSLHLGLGHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQGVQGQ 409
           GA  +GG  AG     G G A G    A  GGG  GAG  GA      A G  G G  G 
Sbjct: 162 GAGGAGGAGAGGGAGAG-GGAGG----AGAGGGAGGAGGAGAGGGAG-AGGAGGAGGAGA 215

Query: 408 GGVGHLDVQQGGHADQAQEGVAELGVGAGGQDAGNADNAG 289
           GG G      GG       G    G GAGG  AG A  AG
Sbjct: 216 GGAG-AGGGAGGAGGAGAGGAGAGGAGAGGAGAGGAGGAG 254

 Score = 40.8 bits (94), Expect = 0.038
 Identities = 39/108 (36%), Positives = 42/108 (38%)
 Frame = -1

Query: 576 SGGLLAGDSLHLGLGHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQGVQGQGGVG 397
           +GG  AG       G   G    A   GG  GAG  GA A      G  G G  G GG G
Sbjct: 181 AGGAGAGGGAGGAGGAGAGGGAGAGGAGGAGGAGAGGAGA----GGGAGGAGGAGAGGAG 236

Query: 396 HLDVQQGGHADQAQEGVAELGVGAGGQDAGNADNAGRTQGSR*TNSSG 253
                 GG A     G A  G GAGG  AG A  AG   G+    + G
Sbjct: 237 AGGAGAGG-AGAGGAGGAGAG-GAGGAGAGGAGGAGAGGGAGGAGAGG 282

 Score = 39.3 bits (90), Expect = 0.11
 Identities = 35/102 (34%), Positives = 36/102 (34%)
 Frame = -1

Query: 594 APGALNSGGLLAGDSLHLGLGHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQGVQ 415
           A GA  +GG  AG     G G   G    A  GGG    G  G       A G  G G  
Sbjct: 115 AGGAGGAGGAGAGGGA--GAGGGAGGAGGAGAGGGAGAGGGAGGAGAGGGAGGAGGAGAG 172

Query: 414 GQGGVGHLDVQQGGHADQAQEGVAELGVGAGGQDAGNADNAG 289
           G  G G      G        G A  G GAG   AG A  AG
Sbjct: 173 GGAGAGGGAGGAGAGGGAGGAGGAGAGGGAGAGGAGGAGGAG 214

 Score = 38.9 bits (89), Expect = 0.14
 Identities = 40/107 (37%), Positives = 41/107 (37%), Gaps = 7/107 (6%)
 Frame = -1

Query: 588 GALNSGGLLAGDSLHLGLGHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQGVQG- 412
           GA  +GG  AG     G G A G    A  GGG  GAG  GA        G  G G  G 
Sbjct: 135 GAGGAGGAGAGGGAGAG-GGAGG----AGAGGGAGGAGGAGAGGGAGAGGGAGGAGAGGG 189

Query: 411 QGGVGHLDVQQG------GHADQAQEGVAELGVGAGGQDAGNADNAG 289
            GG G      G      G A  A  G A  G GAGG     A  AG
Sbjct: 190 AGGAGGAGAGGGAGAGGAGGAGGAGAGGAGAGGGAGGAGGAGAGGAG 236

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 36/117 (30%), Positives = 40/117 (33%), Gaps = 1/117 (0%)
 Frame = -1

Query: 600 HYAPGA-LNSGGLLAGDSLHLGLGHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQ 424
           H   GA   +GG  AG +   G G   G    A   GG  GAG  G       A G  G 
Sbjct: 86  HGGTGAGAGAGGAGAGGA---GAGGGAGAGGGAGGAGGAGGAGAGGGAGAGGGAGGAGGA 142

Query: 423 GVQGQGGVGHLDVQQGGHADQAQEGVAELGVGAGGQDAGNADNAGRTQGSR*TNSSG 253
           G  G  G G      G  A     G    G G G    G A  AG   G+     +G
Sbjct: 143 GAGGGAGAG--GGAGGAGAGGGAGGAGGAGAGGGAGAGGGAGGAGAGGGAGGAGGAG 197

>dbj|BAB03281.1| EBNA-1 [Cynomolgus Epstein-Barr Virus TsB-B6]
          Length = 619

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 58/161 (36%), Positives = 67/161 (41%)
 Frame = -1

Query: 588 GALNSGGLLAGDSLHLGLGHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQGVQGQ 409
           GA  +GG  AG S   G G A G       G G  GAG  GA       +G  G G  G 
Sbjct: 194 GAGGAGGSGAGGS---GAGGAGGSGAGGAGGSGAGGAGGSGAGG-----SGAGGAGGSGA 245

Query: 408 GGVGHLDVQQGGHADQAQEGVAELGVGAGGQDAGNADNAGRTQGSR*TNSSGRRCSRPGQ 229
           GG G       G A  +  G      GAGG  AG A  +G  +G     S GR  SR G+
Sbjct: 246 GGSG------AGGAGGSGAG------GAGGSGAGGAGGSGGGRGRGRGGSRGRGGSR-GR 292

Query: 228 WRSRSRAHQSCRSSQGCTAPGRKRGRPARRPRCRRPGQQRP 106
             SR R       S+G    GR RGR   R    R G++RP
Sbjct: 293 GGSRGRGRGRGGGSRG---RGRGRGRGRGRGEGPRQGEKRP 330

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 64/192 (33%), Positives = 72/192 (37%), Gaps = 9/192 (4%)
 Frame = -1

Query: 588 GALNSGGLLAGDSLHLGLG--HAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQGVQ 415
           GA  +GG  AG S   G G   A G       G G  G+G  GA       +G  G G  
Sbjct: 155 GAGGAGGRGAGGSGAGGAGGSGAGGSGAGGAGGSGAGGSGAGGAGGSGAGGSGAGGAGGS 214

Query: 414 GQGGVGHLDVQQGGHADQAQEGVAEL-GVGAGGQDAGNA--DNAGRTQGSR*TNSSGRRC 244
           G GG G       G +     G     G GAGG  AG A    AG   GS    + G   
Sbjct: 215 GAGGAGGSGAGGAGGSGAGGSGAGGAGGSGAGGSGAGGAGGSGAGGAGGSGAGGAGGSGG 274

Query: 243 SRPGQWRSRSRAHQSCRSSQGCTAPGRKRGRPAR-RPRCRRPGQQR---PSQ*WKTPSSK 76
            R G+ R  SR     R   G    GR RG  +R R R R  G+ R   P Q  K P S 
Sbjct: 275 GR-GRGRGGSRGRGGSRGRGGSRGRGRGRGGGSRGRGRGRGRGRGRGEGPRQGEKRPRSP 333

Query: 75  IDWSPKDERVRS 40
              S      RS
Sbjct: 334 SGSSSSGSSSRS 345

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 49/161 (30%), Positives = 56/161 (34%), Gaps = 9/161 (5%)
 Frame = -1

Query: 588 GALNSGGLLAGDSLHLGLGHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQGVQGQ 409
           G   +GG  AG +   G G A G        GG  G G  G+ A     +G  G G  G 
Sbjct: 126 GGSGAGGSGAGGAGGSGAGGAGGRGAGGSGAGGAGGRGAGGSGAGGAGGSGAGGSGAGGA 185

Query: 408 GGVGHLDVQQGGHADQAQEGVAELGV------GAGGQDAGNADNAGR-TQGSR*TNSSGR 250
           GG G      GG       G    G       GAGG  AG A  +G    G+     SG 
Sbjct: 186 GGSGAGGSGAGGAGGSGAGGSGAGGAGGSGAGGAGGSGAGGAGGSGAGGSGAGGAGGSGA 245

Query: 249 RCSRPG--QWRSRSRAHQSCRSSQGCTAPGRKRGRPARRPR 133
             S  G         A  S     G +  GR RGR   R R
Sbjct: 246 GGSGAGGAGGSGAGGAGGSGAGGAGGSGGGRGRGRGGSRGR 286

 Score = 40.8 bits (94), Expect = 0.038
 Identities = 47/153 (30%), Positives = 58/153 (37%), Gaps = 12/153 (7%)
 Frame = -1

Query: 588 GALNSGGLLAGDSLHLGLGHAQGDDQ--EAVDGGGHDGAGDPGAH-AVLELATGLSGQGV 418
           GA  +GG  AG +   G G A G         G G  GAG  GA  A    A G  G G 
Sbjct: 207 GAGGAGGSGAGGAGGSGAGGAGGSGAGGSGAGGAGGSGAGGSGAGGAGGSGAGGAGGSGA 266

Query: 417 QGQGGVG-----HLDVQQGGHADQAQEGVAELGVGAG----GQDAGNADNAGRTQGSR*T 265
            G GG G          +G    + + G    G G G    G+  G     GR +G R  
Sbjct: 267 GGAGGSGGGRGRGRGGSRGRGGSRGRGGSRGRGRGRGGGSRGRGRGRGRGRGRGEGPRQG 326

Query: 264 NSSGRRCSRPGQWRSRSRAHQSCRSSQGCTAPG 166
               R  S      S SR+  S R+S G ++ G
Sbjct: 327 EKRPRSPSGSSSSGSSSRSSSSGRASSGGSSSG 359

 Score = 40.4 bits (93), Expect = 0.049
 Identities = 38/130 (29%), Positives = 43/130 (32%), Gaps = 1/130 (0%)
 Frame = -1

Query: 675 SGQATAQWQRQSGSRSSGQLLTLA*HYAPGALNSGGLLAGDSLHLGLGHAQGDDQEAVDG 496
           SG      +R  G R S +   +      G   SGG   G     G     G       G
Sbjct: 74  SGSRLGDDRRPDGQRPSKRRSCIGCRGGAGG-GSGGGAGGSGAGGGGAGGSGAGGSGAGG 132

Query: 495 GGHDGAGDPGAHAVLELATGLSGQGVQGQGGVGHLDVQQGGHADQAQEGVAEL-GVGAGG 319
            G  GAG  GA        G SG G  G  G G       G +     G     G GAGG
Sbjct: 133 SGAGGAGGSGAGGAGGRGAGGSGAGGAGGRGAGGSGAGGAGGSGAGGSGAGGAGGSGAGG 192

Query: 318 QDAGNADNAG 289
             AG A  +G
Sbjct: 193 SGAGGAGGSG 202

 Score = 36.6 bits (83), Expect = 0.71
 Identities = 26/89 (29%), Positives = 27/89 (30%)
 Frame = -1

Query: 540 GLGHAQGDDQEAVDGGGHDGAGDPGAHAVLELATGLSGQGVQGQGGVGHLDVQQGGHADQ 361
           G G   G       G G  GAG  GA       +G  G G  G GG G       G    
Sbjct: 105 GSGGGAGGSGAGGGGAGGSGAGGSGAGG-----SGAGGAGGSGAGGAGGRGAGGSGAGGA 159

Query: 360 AQEGVAELGVGAGGQDAGNADNAGRTQGS 274
              G    G G  G        AG   GS
Sbjct: 160 GGRGAGGSGAGGAGGSGAGGSGAGGAGGS 188

>emb|CAE05204.1| OSJNBa0070C17.11 [Oryza sativa (japonica cultivar-group)]
          Length = 202

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 27/72 (37%), Positives = 35/72 (48%)
 Frame = +2

Query: 308 PASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAPGSPAPS 487
           P   PP PTP+ ATP+   + W P   +  P  P PWTP P +P  +  T   P +P   
Sbjct: 42  PPCQPPPPTPTPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPPTP 101

Query: 488 *PPPSTAS*SSP 523
            P PST +   P
Sbjct: 102 APAPSTPTGKCP 113

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
 Frame = +2

Query: 296 LSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCP--------TPP*PWTP*PLSPVASS 451
           L+   A+W  +  P++  P       PP C    P        TPP PWTP P +P   +
Sbjct: 22  LAPAAATWCGSNCPTTKPP-------PPPCQPPPPTPTPATPTTPPTPWTPPPATPTPPT 74

Query: 452 RTACAPGSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRPPLFNAP 589
            T   P +P P+ PPP+ A+ ++P   P P    +PA   P    P
Sbjct: 75  PT---PWTPTPATPPPTPATPATPTTPPTP----APAPSTPTGKCP 113

>sp|Q9FPQ6|GP1_CHLRE Vegetative cell wall protein gp1 precursor (Hydroxyproline-rich
           glycoprotein 1) gi|12018147|gb|AAG45420.1|AF309494_1
           vegetative cell wall protein gp1 [Chlamydomonas
           reinhardtii]
          Length = 555

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 34/95 (35%), Positives = 42/95 (43%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAP 469
           P   A P+  PP+P P S  P    S  PP      P PP P +P P SP   +  + +P
Sbjct: 83  PPSPAPPSPAPPSPAPPSPAPP---SPAPPSPAPPSPAPPSPPSPAPPSPSPPAPPSPSP 139

Query: 470 GSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRPP 574
            SPAP  PP       SP   P P   + P+  PP
Sbjct: 140 PSPAPPLPPSPAPPSPSPPVPPSPSPPVPPSPAPP 174

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 40/104 (38%), Positives = 50/104 (47%), Gaps = 4/104 (3%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPS---SATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTA 460
           PA    P+  PP+P+P    S +P    S  PP  T   P+PP P +P P SP      +
Sbjct: 142 PAPPLPPSPAPPSPSPPVPPSPSPPVPPSPAPPSPTPPSPSPPVPPSPAPPSPAPPVPPS 201

Query: 461 CAPGSPAPS*PP-PSTAS*SSPWA*PRPRWRLSPARRPPLFNAP 589
            AP SPAP  PP P+  S  SP A P P     P+  PP   +P
Sbjct: 202 PAPPSPAPPVPPSPAPPSPPSP-APPSPPSPAPPSPSPPAPPSP 244

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 37/100 (37%), Positives = 45/100 (45%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAP 469
           P   A P+  PP+P P S  P    S  PP      P PP P  P P +P + +  + AP
Sbjct: 55  PPSPAPPSPAPPSPGPPSPAPPSPPSPAPPSPAPPSPAPPSPAPPSP-APPSPAPPSPAP 113

Query: 470 GSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRPPLFNAP 589
            SPAP  PP       SP A P P     P+  PPL  +P
Sbjct: 114 PSPAPPSPPSPAPPSPSPPAPPSPS---PPSPAPPLPPSP 150

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 33/100 (33%), Positives = 43/100 (43%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAP 469
           P   A P+  PP+P P S       S  PP      P PP P  P P  P  +  +   P
Sbjct: 60  PPSPAPPSPGPPSPAPPSPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPP 119

Query: 470 GSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRPPLFNAP 589
             P+P+ P PS  +  SP + P P   L P+  PP  + P
Sbjct: 120 SPPSPAPPSPSPPAPPSP-SPPSPAPPLPPSPAPPSPSPP 158

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 35/95 (36%), Positives = 43/95 (44%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAP 469
           P   A P+  PP+P P S  P    S  PP   S  P  P P +P P SP   S    +P
Sbjct: 50  PPSPAPPSPAPPSPAPPSPGPP---SPAPPSPPSPAPPSPAPPSPAPPSPAPPSPAPPSP 106

Query: 470 GSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRPP 574
             P+P+ P P+  S  SP A P P     P+  PP
Sbjct: 107 APPSPAPPSPAPPSPPSP-APPSPSPPAPPSPSPP 140

 Score = 49.7 bits (117), Expect = 8e-05
 Identities = 35/101 (34%), Positives = 45/101 (43%), Gaps = 1/101 (0%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAP 469
           P   A P+  PP+P P S  P    S  PP      P PP P +P P SP   S    +P
Sbjct: 40  PPSPAPPSPAPPSPAPPSPAPP---SPAPPSPGPPSPAPPSPPSPAPPSPAPPSPAPPSP 96

Query: 470 GSPAPS*PPPSTAS*SSPW-A*PRPRWRLSPARRPPLFNAP 589
             P+P+ P P+  S + P  A P P     P+  PP   +P
Sbjct: 97  APPSPAPPSPAPPSPAPPSPAPPSPPSPAPPSPSPPAPPSP 137

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 38/100 (38%), Positives = 46/100 (46%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAP 469
           PA + +P S PP+P PS A P+      PP  +   P PP P  P P SP   S     P
Sbjct: 281 PANTPMPPS-PPSPPPSPAPPT---PPTPPSPSPPSPVPPSP-APVPPSPAPPSPAPSPP 335

Query: 470 GSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRPPLFNAP 589
            SPAP  P PS +   SP   P P    SP+  P    +P
Sbjct: 336 PSPAP--PTPSPSPSPSPSPSPSPSPSPSPSPSPSPIPSP 373

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 37/101 (36%), Positives = 46/101 (44%), Gaps = 1/101 (0%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAP 469
           P   A P+  PP+P P S  P       PP      P+PP P +P P SP      + AP
Sbjct: 93  PPSPAPPSPAPPSPAPPSPAPPSPAPPSPPSPAPPSPSPPAPPSPSPPSPAPPLPPSPAP 152

Query: 470 GSPAPS*PP-PSTAS*SSPWA*PRPRWRLSPARRPPLFNAP 589
            SP+P  PP PS     SP A P P     P+  PP+  +P
Sbjct: 153 PSPSPPVPPSPSPPVPPSP-APPSP---TPPSPSPPVPPSP 189

 Score = 46.2 bits (108), Expect = 9e-04
 Identities = 34/87 (39%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +2

Query: 320 PPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAPGSPAPS*P-P 496
           PP+P+P S  P    S  PP  +   P PP P  P P SP   S T  +P  P P  P P
Sbjct: 134 PPSPSPPSPAPPLPPSPAPP--SPSPPVPPSPSPPVPPSPAPPSPTPPSPSPPVPPSPAP 191

Query: 497 PSTAS*SSPW-A*PRPRWRLSPARRPP 574
           PS A    P  A P P   + P+  PP
Sbjct: 192 PSPAPPVPPSPAPPSPAPPVPPSPAPP 218

 Score = 46.2 bits (108), Expect = 9e-04
 Identities = 37/98 (37%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRT---- 457
           P     PA+ P  P+P S  PS A            PTPP P +P P SPV  S      
Sbjct: 275 PPRPPFPANTPMPPSPPSPPPSPA-----------PPTPPTPPSPSPPSPVPPSPAPVPP 323

Query: 458 ACAPGSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRP 571
           + AP SPAPS PP       SP   P P    SP+  P
Sbjct: 324 SPAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSPSP 361

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 39/99 (39%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCP-TPP*PWTP*PLSPVASSRTACA 466
           P   A P+  PP P PS A PS A    PP   S  P +PP P  P P SP   S +  A
Sbjct: 186 PPSPAPPSPAPPVP-PSPAPPSPA----PPVPPSPAPPSPPSPAPPSPPSPAPPSPSPPA 240

Query: 467 PGSP---APS*PPPSTAS*SSPWA*PRPRWRLSPARRPP 574
           P SP   +P+ P P+  S   P   P P     P  RPP
Sbjct: 241 PPSPVPPSPAPPSPAPPSPKPPAPPPPPSPPPPPPPRPP 279

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 35/103 (33%), Positives = 48/103 (45%), Gaps = 3/103 (2%)
 Frame = +2

Query: 290 PALSALPASWPPAPT---PSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTA 460
           PA  + P+  PP+P+   P S +P       PP      P+PP P  P P  PV  S   
Sbjct: 116 PAPPSPPSPAPPSPSPPAPPSPSPPSPAPPLPPSPAPPSPSPPVP--PSPSPPVPPSPAP 173

Query: 461 CAPGSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRPPLFNAP 589
            +P  P+PS P P + +  SP A P P     P+  PP+  +P
Sbjct: 174 PSPTPPSPSPPVPPSPAPPSP-APPVPPSPAPPSPAPPVPPSP 215

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 37/94 (39%), Positives = 43/94 (45%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAP 469
           PA    P+  PP+P PS A PS      PP      P+PP P +P P SP   S    +P
Sbjct: 207 PAPPVPPSPAPPSP-PSPAPPS------PPSPAPPSPSPPAPPSPVPPSPAPPSPAPPSP 259

Query: 470 GSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRP 571
             PAP  PPPS      P   PRP +   PA  P
Sbjct: 260 KPPAPP-PPPS----PPPPPPPRPPF---PANTP 285

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 37/102 (36%), Positives = 45/102 (43%), Gaps = 7/102 (6%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCP---TPP*PWTP*PLSPVASSRTA 460
           P+    P+  PP+PTP S +P    S  PP      P    PP P  P P SP   S  +
Sbjct: 163 PSPPVPPSPAPPSPTPPSPSPPVPPSPAPPSPAPPVPPSPAPPSPAPPVPPSPAPPSPPS 222

Query: 461 CAPGSP---APS*P-PPSTAS*SSPWA*PRPRWRLSPARRPP 574
            AP SP   AP  P PP+  S   P   P P     P+ +PP
Sbjct: 223 PAPPSPPSPAPPSPSPPAPPSPVPPS--PAPPSPAPPSPKPP 262

 Score = 42.0 bits (97), Expect = 0.017
 Identities = 36/106 (33%), Positives = 41/106 (37%), Gaps = 11/106 (10%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*--------PWTP*PLSPVA 445
           P+  A P+  PP+P P S  P       PP   S  P PP         P  P P SP  
Sbjct: 236 PSPPAPPSPVPPSPAPPSPAPPSPKPPAPPPPPSPPPPPPPRPPFPANTPMPPSPPSPPP 295

Query: 446 SSRTACAPGSPAPS*P---PPSTAS*SSPWA*PRPRWRLSPARRPP 574
           S      P  P+PS P   PPS A      A P P     P+  PP
Sbjct: 296 SPAPPTPPTPPSPSPPSPVPPSPAPVPPSPAPPSPAPSPPPSPAPP 341

 Score = 42.0 bits (97), Expect = 0.017
 Identities = 37/99 (37%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = +2

Query: 290 PALSALPASWPPAPT----PSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRT 457
           P   A P+  PPAP     PS A PS A    PP  + + P PP P +P P  P      
Sbjct: 228 PPSPAPPSPSPPAPPSPVPPSPAPPSPA----PP--SPKPPAPPPPPSPPPPPPPRPPFP 281

Query: 458 ACAPGSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRPP 574
           A  P  P+P  PPPS A    P   P P     P+  PP
Sbjct: 282 ANTPMPPSPPSPPPSPA----PPTPPTPPSPSPPSPVPP 316

 Score = 42.0 bits (97), Expect = 0.017
 Identities = 37/97 (38%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +2

Query: 290 PALSALPASWPPAP-TPSSATPSWA*SAWPPCCTSRC-PTPP*PWTP*PLSPVASSRTAC 463
           P +   PA   PAP  P S  P    S  PP   S   P+PP P  P P SP   S +  
Sbjct: 183 PPVPPSPAPPSPAPPVPPSPAPP---SPAPPVPPSPAPPSPPSPAPPSPPSPAPPSPSPP 239

Query: 464 APGSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRPP 574
           AP SP P  P P + +  SP   P P    SP   PP
Sbjct: 240 APPSPVPPSPAPPSPAPPSPKP-PAPPPPPSPPPPPP 275

 Score = 37.4 bits (85), Expect = 0.42
 Identities = 36/95 (37%), Positives = 40/95 (41%)
 Frame = +2

Query: 290 PALSALPASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAP 469
           PA  + P+  PP+P PS A PS +  A PP      P PP P  P P  P        AP
Sbjct: 215 PAPPSPPSPAPPSP-PSPAPPSPSPPA-PPSPVPPSPAPPSPAPPSPKPP--------AP 264

Query: 470 GSPAPS*PPPSTAS*SSPWA*PRPRWRLSPARRPP 574
             P PS PPP       P   P P    SP   PP
Sbjct: 265 -PPPPSPPPPPPPRPPFPANTPMPP---SPPSPPP 295

 Score = 37.4 bits (85), Expect = 0.42
 Identities = 25/66 (37%), Positives = 30/66 (44%), Gaps = 1/66 (1%)
 Frame = +2

Query: 380 CCTSRCPTPP*PWTP*PLSPVASSRTACAPGSPAPS*P-PPSTAS*SSPWA*PRPRWRLS 556
           C  S  P  P P +P P SP   S    +PG P+P+ P PPS A  S     P P     
Sbjct: 39  CPPSPAPPSPAPPSPAPPSPAPPSPAPPSPGPPSPAPPSPPSPAPPSPAPPSPAPPSPAP 98

Query: 557 PARRPP 574
           P+  PP
Sbjct: 99  PSPAPP 104

 Score = 37.4 bits (85), Expect = 0.42
 Identities = 30/82 (36%), Positives = 39/82 (46%), Gaps = 1/82 (1%)
 Frame = +2

Query: 320 PPAPTPSSATPSWA*SAWP-PCCTSRCPTPP*PWTP*PLSPVASSRTACAPGSPAPS*PP 496
           PP+P+P S  P       P P   S  P+PP    P P  P  S   + +P SP+PS P 
Sbjct: 305 PPSPSPPSPVPPSPAPVPPSPAPPSPAPSPP----PSPAPPTPSPSPSPSP-SPSPS-PS 358

Query: 497 PSTAS*SSPWA*PRPRWRLSPA 562
           PS +   SP   P P  + SP+
Sbjct: 359 PSPSPSPSPSPIPSPSPKPSPS 380

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 32/78 (41%), Positives = 37/78 (47%)
 Frame = +2

Query: 308 PASWPPAPTPSSATPSWA*SAWPPCCTSRCPTPP*PWTP*PLSPVASSRTACAPGSPAPS 487
           PA  PP+P P S  PS      PP      P PP   TP P SP  S   + +P SP+PS
Sbjct: 318 PAPVPPSPAPPSPAPS------PP----PSPAPP---TPSP-SPSPSPSPSPSP-SPSPS 362

Query: 488 *PPPSTAS*SSPWA*PRP 541
            P PS +   SP   P P
Sbjct: 363 -PSPSPSPIPSPSPKPSP 379



EST assemble image


clone accession position
1 HC090g09_r AV638786 1 536
2 CM001e01_r AV386517 99 593
3 CM068b06_r AV391058 99 731
4 MXL013f08_r BP093779 99 591
5 CM040h01_r AV389157 99 660
6 MXL054f06_r BP096210 99 595
7 MX047f03_r BP087947 101 472
8 MXL031e03_r BP094877 101 488
9 CM066f12_r AV390838 101 667
10 MX031h07_r BP087326 101 575
11 LC042f10_r AV621923 102 610
12 LC034h11_r AV621360 102 593
13 LC025g02_r AV620705 105 668
14 MX002d04_r BP086126 107 489
15 MX044f05_r BP087836 107 454
16 LC018c11_r AV620154 107 568
17 LC024a12_r AV620592 107 624
18 LC044e10_r AV622180 107 640
19 LC059a09_r AV623110 107 641
20 LC096g12_r AV625716 107 574
21 MX230c04_r BP090863 108 396
22 LC015e04_r AV619953 108 583
23 LC084c10_r AV624902 108 524
24 CM089f10_r AV392244 108 640
25 CM074e01_r AV391518 110 697
26 MX006a11_r BP086296 112 476
27 CM043c07_r AV389494 112 401
28 MX252e10_r BP092320 117 561
29 HC019a04_r AV633288 118 464
30 HC085f04_r AV638377 118 566
31 HC059f11_r AV636453 118 264
32 HC034d01_r AV634510 122 638
33 LC098b02_r AV625807 125 368
34 HC043c11_r AV635206 132 476
35 MXL089f01_r BP098221 166 557
36 CM087f12_r AV392418 238 628
37 LCL026d06_r AV627416 271 532
38 HCL022h02_r AV640814 337 754
39 MXL009b11_r BP093495 488 875
40 MX245d02_r BP091860 671 1185
41 CL05e07_r AV393571 718 1218
42 CL10d11_r AV393667 857 1203
43 MXL018e03_r BP094124 897 1175




Chlamydomonas reinhardtii
Kazusa DNA Research Institute