Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000114A_C02 KCC000114A_c02
(1276 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495... 83 1e-14
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus] 83 1e-14
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ... 81 5e-14
pir||T43481 probable mucin DKFZp434C196.1 - human (fragment) gi|... 77 8e-13
gb|AAH36187.1| SRRM1 protein [Homo sapiens] 76 1e-12
>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
unnamed protein product [Mus musculus]
Length = 2607
Score = 82.8 bits (203), Expect = 1e-14
Identities = 107/364 (29%), Positives = 147/364 (39%), Gaps = 28/364 (7%)
Frame = -1
Query: 1141 RPEQCQGEAGERAGWEEQCPREKGREKERETEWARGRGRCRRRSAGSGAPPRQPHRPRQR 962
R + + A +R + P ++G + R +W R R SA R P R +
Sbjct: 382 RAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSR------SAQRWGKSRSPQRRGRS 435
Query: 961 RTPERS--QRPRGARQRCPERGPRRHRRRSQTPASPA-ARPSGPWRPPSSCS--PAQPQR 797
R+P+R R R ++R R RR R S++PA+ +R P R S S PA+ +
Sbjct: 436 RSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRS 495
Query: 796 RTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARRPGPWTRRS 617
R+R P R RR SR R RG +R S P RR+R P RRS
Sbjct: 496 RSRTPAR---RRSRSRTPAR-----------RGRSR-----SRTPTRRRSRTRSPVRRRS 536
Query: 616 WKPAPPAAARPGTTWSCSRRACTRTKSPGSPVPWRR--TRGQPPHYR----RASQPGRRS 455
+ A R G S SR R+ S P RR +R + P R R+ P RR
Sbjct: 537 RSRSQ--ARRSGR--SRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARRG 592
Query: 454 RRSWRPPTCPQQQSRRCGRSGRG*RRRPRRSGGAG-----------HQRRPSGQSQPEPA 308
R R P + +SR R GR R P+R G +G QRR S PE
Sbjct: 593 RSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMK 652
Query: 307 ASAGC*DRCST*DQGRRQTRSCRGRRVRTRTRMRAQPLARPGPK------ARHTRSMSAL 146
S R++RS R + ++ R+ + P PK R +RS S+
Sbjct: 653 KS----------HVSSRRSRSLSSPRSKAKSLRRSLSGSSPCPKQKSQTPTRRSRSGSSP 702
Query: 145 RYQK 134
QK
Sbjct: 703 PKQK 706
Score = 73.9 bits (180), Expect = 6e-12
Identities = 104/348 (29%), Positives = 139/348 (39%), Gaps = 25/348 (7%)
Frame = -1
Query: 1174 PGWRW*S*SPQRPEQCQGEAGERAGWEEQCPREKGREKERETEWARGRGRCR---RRSAG 1004
PGW S S + + + R + P +GR + R T RGR R R RR +
Sbjct: 441 PGW---SRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR-TPARRGRSRSRTPARRRSR 496
Query: 1003 SGAPPRQPHRPRQ--RRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAARPSGPWRP 830
S P R+ R R RR RS+ P R R RR R RSQ S +R P R
Sbjct: 497 SRTPARRRSRSRTPARRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRSGRSRSRTPARR 556
Query: 829 PSSCSPAQPQRRTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARR 650
P RR R R P RR S+R + R P R RG +R PARR
Sbjct: 557 SGRSRSRTPARRGRSRSRTPARR-SARSRSRT------PAR-RGRSRS------RTPARR 602
Query: 649 ARRPGPWTRR--SWKPAPPAAARPGTTW---SCSRRACTRTKSPGSP------VPWRRTR 503
R RR S P R G++ + SR + R++S SP V RR+R
Sbjct: 603 RSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSHVSSRRSR 662
Query: 502 GQPPHYRRASQPGRRSRRSWRPPTCPQQQSR---RCGRSGRG*RRR-----PRRSGGAGH 347
+A RRS P CP+Q+S+ R RSG ++ PR+S
Sbjct: 663 SLSSPRSKAKSL-RRSLSGSSP--CPKQKSQTPTRRSRSGSSPPKQKSKTPPRQSRSNSP 719
Query: 346 QRRPSGQSQPEPAASAGC-*DRCST*DQGRRQTRSCRGRRVRTRTRMR 206
Q + + P P + D C+ Q + + S V++RT R
Sbjct: 720 QPKVKSGTPPRPGSVTNMQADECTATPQRQSHSESSPDGEVKSRTPSR 767
Score = 71.2 bits (173), Expect = 4e-11
Identities = 112/427 (26%), Positives = 164/427 (38%), Gaps = 59/427 (13%)
Frame = -1
Query: 1150 SPQR-PEQCQGEAGERAGWEEQC-----PREKGREKERETEWARGRGRCRRRSAGSGAPP 989
SP+ P+ G R+ E + PR + E + R R RSA S
Sbjct: 1518 SPEHAPKSRTARRGSRSSIEPKTKSRTPPRRRSSRSSPELT-RKARVSRRSRSASSSPEI 1576
Query: 988 RQPHRPRQRRTP-----ERSQRPRGARQRCPERGPRRHRRRSQTPASPAARPSGPWRPPS 824
R PR+RR+P E +++ R +R+R PR + S+ SP+ +P G R S
Sbjct: 1577 RSRTPPRRRRSPSVSSPEPTEKSRSSRRRRSVSSPRT-KTTSRRGRSPSPKPRGLQRSRS 1635
Query: 823 SCSPAQPQRRTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGT---------------- 692
S + R TR+ R + +SR +QR +R RGG+
Sbjct: 1636 R-SRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTS 1694
Query: 691 ------RC*S*WSWHPPARRARRPGPWTRRSWK--PAPPAAARPGTTWSCSRRACTRT-- 542
R + + +R P PW R + PA +R T RR+ +RT
Sbjct: 1695 SRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSITPLISRRRSRSRTSP 1754
Query: 541 --------------KSPGSPVPWRRTRGQ-PPHYRRASQPGRRSRRSWRPPTCPQQQSRR 407
+S SPV RR+R + PP RR S+ +RR R T P + R
Sbjct: 1755 VSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRSRTPPVTRRRS 1814
Query: 406 CGRSGRG*RRRPRRSGGAGHQRRPSGQSQPEPAASAGC*DRCST*DQGRRQTRSCRGRRV 227
R+ RRR R +RR ++ P + R T RR++RS
Sbjct: 1815 RSRTPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRS----RSRTSPVTRRRSRSRTSPVT 1870
Query: 226 RTRTRMRAQPLARPGPKAR-------HTRSMSALRYQKPTGCSRGCACGGAYGGATTRRF 68
R R+R R P R ++R +RS S L ++ SR A G + R
Sbjct: 1871 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRR---SRSRTPRAARGKRSLTRS 1927
Query: 67 VSAVERR 47
A+ RR
Sbjct: 1928 PPAIRRR 1934
Score = 65.5 bits (158), Expect = 2e-09
Identities = 97/359 (27%), Positives = 129/359 (35%), Gaps = 35/359 (9%)
Frame = -1
Query: 1123 GEAGERAGWEEQCPREKGREKERETEWARGRGRCRRRSAGSGAPP---RQPHRPRQRRT- 956
G + E G P+E+ + R R+RS +P + H PR R+
Sbjct: 1400 GSSQELDGKPSASPQERSESDSSPDSKPKTRTPLRQRSHSGSSPEVDSKSRHSPRLSRSG 1459
Query: 955 --PERSQRPR------GARQRCPER---GPR---RHRR-------RSQTPASPAARPSGP 839
PE +PR PE PR RH R R +P ++ S P
Sbjct: 1460 SSPEMKDKPRVLQRAQSGTDSSPEHKIPAPRALPRHSRSGSSSKERGPSPEGSSSSESSP 1519
Query: 838 WRPPSSCSPAQPQRRTRQP---CRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSW 668
P S + + R + +P R P RR SSR T +R R +
Sbjct: 1520 EHAPKSRTARRGSRSSIEPKTKSRTPPRRRSSRSSPELTRKARVSRRSRSASSS------ 1573
Query: 667 HPPARRARRPGPWTRRSWKPAPPAAARPGTTWSCSRRACTRTKSPGSPVPWRRTRGQPPH 488
P R+R P P RRS P ++ T S S R SP + RR R P
Sbjct: 1574 --PEIRSRTP-PRRRRS----PSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPK 1626
Query: 487 YRRASQPGRRSRRSWRPPT-------CPQQQSRRCGRSGRG*RRRPRRSGGAGHQRRPSG 329
R + RSRR T Q SRR RS R RR GG+G+ R
Sbjct: 1627 PRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPT 1686
Query: 328 QSQPEPAASAGC*DRCST*DQGRRQTRSCRGRRVRTRTRMRAQPLARPGPKARHTRSMS 152
+ + +S R T R+++RS R+R RA P A H RS S
Sbjct: 1687 RQESSRTSSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASP-------ATHRRSRS 1738
Score = 47.0 bits (110), Expect = 7e-04
Identities = 74/303 (24%), Positives = 108/303 (35%), Gaps = 22/303 (7%)
Frame = -1
Query: 970 RQRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAARPSG--PWRPPSSCSPAQPQR 797
R +PERS P P + +P AA PS P P S SP
Sbjct: 251 RPSPSPERSS----TGPELPAPTPLLVEQHDDSPRPLAAIPSSQEPVNPSSEASPT---- 302
Query: 796 RTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARRPGPWTRRS 617
R P + PE+ P S + C PQ + S P P P +RR
Sbjct: 303 RGCSPPKSPEKPPQSTSSESCPPS---PQPTKVSRHASS-----SPESLKPTPAPGSRRE 354
Query: 616 WKPAPPAAARPGTTWSCSRRACTRTKSPGSPVPWRRTRGQPPHYRRASQPGRR-SRRSWR 440
+P + R S R KS R R + P +R R ++R
Sbjct: 355 ISSSPTSKNR-------SHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHS 407
Query: 439 PPTCPQ-QQSRRCGRSGRG*RRRPRRSGGAGHQRRPS------------------GQSQP 317
PQ ++SR R G+ R P+R G + +RP G+S
Sbjct: 408 RSRSPQWRRSRSAQRWGKS--RSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHS 465
Query: 316 EPAASAGC*DRCST*DQGRRQTRSCRGRRVRTRTRMRAQPLARPGPKARHTRSMSALRYQ 137
A+ G + +GR ++R+ RR R+RT R + +R + +RS + R +
Sbjct: 466 RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRRR 525
Query: 136 KPT 128
T
Sbjct: 526 SRT 528
Score = 44.3 bits (103), Expect = 0.005
Identities = 64/266 (24%), Positives = 94/266 (35%), Gaps = 22/266 (8%)
Frame = -1
Query: 1150 SPQRPEQCQGEAGERAGWEEQCPREKGREKERETEWARGRGRC--------RRRSAGSGA 995
S PE + R PR K + R G C RRS +
Sbjct: 645 SNSSPEMKKSHVSSRRSRSLSSPRSKAKSLRRSLS---GSSPCPKQKSQTPTRRSRSGSS 701
Query: 994 PPRQPHRPRQRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASP------AARPSG--P 839
PP+Q + R++ S +P+ P G + + + A+P + P G
Sbjct: 702 PPKQKSKTPPRQSRSNSPQPKVKSGTPPRPGSVTNMQADECTATPQRQSHSESSPDGEVK 761
Query: 838 WRPPS--SCSPAQPQRRTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWH 665
R PS SCS + P+ ++ P R R SS + T PRG + S S
Sbjct: 762 SRTPSRQSCSGSSPRVKSSTPPRQSPSRSSSPQPKVKT-----VISPRGRSHSSS--SSP 814
Query: 664 PPARRARRPGPWTRRSWKPAPPAAARPGTTWSCSRRACTRTKSPGSPV----PWRRTRGQ 497
P+R R RS P P +R R + +R+ SP S + P R +
Sbjct: 815 SPSRVTSRTPQRKSRSVSPCPKVDSR-------LRHSRSRSSSPDSKMELGTPLRHSGST 867
Query: 496 PPHYRRASQPGRRSRRSWRPPTCPQQ 419
P+ + Q S CPQ+
Sbjct: 868 SPYPKSMLQTPPDQNLSGSKSPCPQK 893
Score = 37.7 bits (86), Expect = 0.44
Identities = 76/317 (23%), Positives = 111/317 (34%), Gaps = 44/317 (13%)
Frame = -1
Query: 967 QRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAAR--------------------- 851
Q+RTP R +R A + PR RRS++ +SP R
Sbjct: 1271 QQRTPSR-ERSSSASPELKDGLPRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDT 1329
Query: 850 PSGPWRPPSSCSPAQPQRRTRQPCRMPERRPSS--RHQQRCTEGW*RPQRPRGGTRC--- 686
P P R S C + + Q R PSS R+ + T PQR R G+
Sbjct: 1330 PQTPSRGRSECDSSPEPKALPQTPRARSHSPSSPERNNKSVT-----PQRERSGSESSVE 1384
Query: 685 *S*WSWHPPARRARRPGPWTRRSWKPAPPAAARPGTTWSCSRRACTRTKSPGSPVPWRRT 506
+ P +R+ R G KP+ R + S + TRT P+ R
Sbjct: 1385 QKNLARTSPGQRS-RSGSSQELDGKPSASPQERSESDSSPDSKPKTRT-----PLRQRSH 1438
Query: 505 RGQPPHYRRASQPGRRSRRSWRPPTCPQQ----QSRRCGRSGRG*RRRP--------RRS 362
G P S+ R RS P + Q + G + P RS
Sbjct: 1439 SGSSPEVDSKSRHSPRLSRSGSSPEMKDKPRVLQRAQSGTDSSPEHKIPAPRALPRHSRS 1498
Query: 361 GGAGHQRRPSGQSQPEPAASAGC*DRCST*DQGRRQTRSCRGRRVRTRTRMR------AQ 200
G + +R PS + +S + T RR +RS + ++RT R +
Sbjct: 1499 GSSSKERGPSPEGSSSSESSPEHAPKSRT---ARRGSRSSIEPKTKSRTPPRRRSSRSSP 1555
Query: 199 PLARPGPKARHTRSMSA 149
L R +R +RS S+
Sbjct: 1556 ELTRKARVSRRSRSASS 1572
Score = 35.8 bits (81), Expect = 1.7
Identities = 45/171 (26%), Positives = 59/171 (34%), Gaps = 10/171 (5%)
Frame = -1
Query: 1084 PREKGREKERETEWARGRGRCR-----RRSAGSGAPPRQPHRPRQRRTP-----ERSQRP 935
P + R + R + R R R R RR + S P R R R P RS+ P
Sbjct: 1832 PVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTP 1891
Query: 934 RGARQRCPERGPRRHRRRSQTPASPAARPSGPWRPPSSCSPAQPQRRTRQPCRMPERRPS 755
R+R R P RRRS++ AAR + TR P + R S
Sbjct: 1892 LLPRKRSRSRSPLAIRRRSRSRTPRAARGK--------------RSLTRSPPAIRRRSAS 1937
Query: 754 SRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARRPGPWTRRSWKPAP 602
R R G+R P A + R ++R S P P
Sbjct: 1938 GSSSDRSRSATPPATRNHSGSRT------PPVALSSSRMSCFSRPSMSPTP 1982
Score = 35.4 bits (80), Expect = 2.2
Identities = 44/135 (32%), Positives = 64/135 (46%)
Frame = +2
Query: 374 TPTLSPPRTATPSTLLLRTCRRSPASSRTAAWL*CSAVMWRLTASSSPRHWATRALGPRA 553
TP +S R+ + ++ + R RRS + +R + S V R + S +P R
Sbjct: 1740 TPLISRRRSRSRTSPVSR--RRSRSVNRRRSRSRASPVSRRRSRSRTPPV-------TRR 1790
Query: 554 STPAATPSRPRACRCWRSRLPASSRPRPRTPGPPRWRMPRPSASTPGAATRTLRPSPSLC 733
+ + TP+R R+ RSR P +R R R+ PP R S ++P T R S S
Sbjct: 1791 RSRSRTPTRRRS----RSRTPPVTRRRSRSRTPPVTRRRSRSRTSP----VTRRRSRSRT 1842
Query: 734 TPLLVTRRRSPLRHS 778
+P VTRRRS R S
Sbjct: 1843 SP--VTRRRSRSRTS 1855
Score = 34.7 bits (78), Expect = 3.7
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = -3
Query: 1022 PAALCRKRRTTSAASSATSAADSRTESTASGCSSALP*AGTT*APAAKSDTSFSSSSPQR 843
P RKRR++S++SS++S++ S + S++S SS+ S +S SSSS
Sbjct: 2456 PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSS------------SSSSSSSSSSSSS 2503
Query: 842 ALAPS-FQL*PSTTTAPDTPALP 777
+ +PS + P P +P P
Sbjct: 2504 SSSPSPAKPGPQALPKPASPKKP 2526
Score = 34.3 bits (77), Expect = 4.8
Identities = 27/78 (34%), Positives = 36/78 (45%), Gaps = 4/78 (5%)
Frame = +2
Query: 545 PRASTPAATPSRPRACRCWRSRLPASSRPRPRTPGPP-RWRMPRPSASTPGAATRTLRPS 721
PR + ++P R R R ASS P R+ PP R R P S+ P +R+ R
Sbjct: 1546 PRRRSSRSSPELTRKARVSRRSRSASSSPEIRSRTPPRRRRSPSVSSPEPTEKSRSSRRR 1605
Query: 722 PSLCTPLLVT---RRRSP 766
S+ +P T R RSP
Sbjct: 1606 RSVSSPRTKTTSRRGRSP 1623
Score = 34.3 bits (77), Expect = 4.8
Identities = 37/155 (23%), Positives = 59/155 (37%), Gaps = 24/155 (15%)
Frame = +2
Query: 386 SPPRTATPSTLLLRTCRRSP-------------ASSRTAAWL*CSAVMWRLTASSSPRHW 526
+PPR + + + C +P SRT + CS R+ +S+ PR
Sbjct: 727 TPPRPGSVTNMQADECTATPQRQSHSESSPDGEVKSRTPSRQSCSGSSPRVKSSTPPRQS 786
Query: 527 ATRALGPRASTPAATPSRPRACRCWRSRLPASSRPRPRTPGPPRWRMPRPSASTPGAATR 706
+R+ P+ R R+ +SS P P R ++ TP +R
Sbjct: 787 PSRSSSPQPKVKTVISPRGRS-------HSSSSSPSP----------SRVTSRTPQRKSR 829
Query: 707 TLRPSPSLCTPLLVTRRRS-----------PLRHS 778
++ P P + + L +R RS PLRHS
Sbjct: 830 SVSPCPKVDSRLRHSRSRSSSPDSKMELGTPLRHS 864
>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
Length = 2607
Score = 82.8 bits (203), Expect = 1e-14
Identities = 107/364 (29%), Positives = 147/364 (39%), Gaps = 28/364 (7%)
Frame = -1
Query: 1141 RPEQCQGEAGERAGWEEQCPREKGREKERETEWARGRGRCRRRSAGSGAPPRQPHRPRQR 962
R + + A +R + P ++G + R +W R R SA R P R +
Sbjct: 382 RAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSR------SAQRWGKSRSPQRRGRS 435
Query: 961 RTPERS--QRPRGARQRCPERGPRRHRRRSQTPASPA-ARPSGPWRPPSSCS--PAQPQR 797
R+P+R R R ++R R RR R S++PA+ +R P R S S PA+ +
Sbjct: 436 RSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRS 495
Query: 796 RTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARRPGPWTRRS 617
R+R P R RR SR R RG +R S P RR+R P RRS
Sbjct: 496 RSRTPAR---RRSRSRTPAR-----------RGRSR-----SRTPARRRSRTRSPVRRRS 536
Query: 616 WKPAPPAAARPGTTWSCSRRACTRTKSPGSPVPWRR--TRGQPPHYR----RASQPGRRS 455
+ A R G S SR R+ S P RR +R + P R R+ P RR
Sbjct: 537 RSRSQ--ARRSGR--SRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARRG 592
Query: 454 RRSWRPPTCPQQQSRRCGRSGRG*RRRPRRSGGAG-----------HQRRPSGQSQPEPA 308
R R P + +SR R GR R P+R G +G QRR S PE
Sbjct: 593 RSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMK 652
Query: 307 ASAGC*DRCST*DQGRRQTRSCRGRRVRTRTRMRAQPLARPGPK------ARHTRSMSAL 146
S R++RS R + ++ R+ + P PK R +RS S+
Sbjct: 653 KS----------HVSSRRSRSLSSPRSKAKSLRRSLSGSSPCPKQKSQTPTRRSRSGSSP 702
Query: 145 RYQK 134
QK
Sbjct: 703 PKQK 706
Score = 74.3 bits (181), Expect = 4e-12
Identities = 104/348 (29%), Positives = 140/348 (39%), Gaps = 25/348 (7%)
Frame = -1
Query: 1174 PGWRW*S*SPQRPEQCQGEAGERAGWEEQCPREKGREKERETEWARGRGRCR---RRSAG 1004
PGW S S + + + R + P +GR + R T RGR R R RR +
Sbjct: 441 PGW---SRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR-TPARRGRSRSRTPARRRSR 496
Query: 1003 SGAPPRQPHRPRQRRTPERSQRPRGARQRCPERGP--RRHRRRSQTPASPAARPSGPWRP 830
S P R+ R R RS+ AR+R R P RR R RSQ S +R P R
Sbjct: 497 SRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSQARRSGRSRSRTPARR 556
Query: 829 PSSCSPAQPQRRTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARR 650
P RR R R P RR S+R + R P R RG +R PARR
Sbjct: 557 SGRSRSRTPARRGRSRSRTPARR-SARSRSRT------PAR-RGRSRS------RTPARR 602
Query: 649 ARRPGPWTRR--SWKPAPPAAARPGTTW---SCSRRACTRTKSPGSP------VPWRRTR 503
R RR S P R G++ + SR + R++S SP V RR+R
Sbjct: 603 RSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSHVSSRRSR 662
Query: 502 GQPPHYRRASQPGRRSRRSWRPPTCPQQQSR---RCGRSGRG*RRR-----PRRSGGAGH 347
+A RRS P CP+Q+S+ R RSG ++ PR+S
Sbjct: 663 SLSSPRSKAKSL-RRSLSGSSP--CPKQKSQTPTRRSRSGSSPPKQKSKTPPRQSRSNSP 719
Query: 346 QRRPSGQSQPEPAASAGC-*DRCST*DQGRRQTRSCRGRRVRTRTRMR 206
Q + + P P + D C+ Q + + S V++RT R
Sbjct: 720 QPKVKSGTPPRPGSVTNMQADECTATPQRQSHSESSPDGEVKSRTPSR 767
Score = 72.0 bits (175), Expect = 2e-11
Identities = 112/427 (26%), Positives = 164/427 (38%), Gaps = 59/427 (13%)
Frame = -1
Query: 1150 SPQR-PEQCQGEAGERAGWEEQC-----PREKGREKERETEWARGRGRCRRRSAGSGAPP 989
SP+ P+ G R+ E + PR + E + R R RSA S
Sbjct: 1518 SPEHAPKSRTARRGSRSSIEPKTKSHTPPRRRSSRSSPELT-RKARVSRRSRSASSSPEI 1576
Query: 988 RQPHRPRQRRTP-----ERSQRPRGARQRCPERGPRRHRRRSQTPASPAARPSGPWRPPS 824
R PR+RR+P E +++ R +R+R PR + S+ SP+ +P G R S
Sbjct: 1577 RSRTPPRRRRSPSVSSPEPTEKSRSSRRRRSVSSPRT-KTTSRRGRSPSPKPRGLQRSRS 1635
Query: 823 SCSPAQPQRRTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGT---------------- 692
S + R TR+ R + +SR +QR +R RGG+
Sbjct: 1636 R-SRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTS 1694
Query: 691 ------RC*S*WSWHPPARRARRPGPWTRRSWK--PAPPAAARPGTTWSCSRRACTRT-- 542
R + + +R P PW R + PA +R T RR+ +RT
Sbjct: 1695 SRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSP 1754
Query: 541 --------------KSPGSPVPWRRTRGQ-PPHYRRASQPGRRSRRSWRPPTCPQQQSRR 407
+S SPV RR+R + PP RR S+ +RR R T P + R
Sbjct: 1755 VSRRRSRSVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRSRTPPVTRRRS 1814
Query: 406 CGRSGRG*RRRPRRSGGAGHQRRPSGQSQPEPAASAGC*DRCST*DQGRRQTRSCRGRRV 227
R+ RRR R +RR ++ P + R T RR++RS
Sbjct: 1815 RSRTPPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRS----RSRTSPVTRRRSRSRTSPVT 1870
Query: 226 RTRTRMRAQPLARPGPKAR-------HTRSMSALRYQKPTGCSRGCACGGAYGGATTRRF 68
R R+R R P R ++R +RS S L ++ SR A G + R
Sbjct: 1871 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRR---SRSRTPRAARGKRSLTRS 1927
Query: 67 VSAVERR 47
A+ RR
Sbjct: 1928 PPAIRRR 1934
Score = 63.5 bits (153), Expect = 7e-09
Identities = 96/359 (26%), Positives = 128/359 (34%), Gaps = 35/359 (9%)
Frame = -1
Query: 1123 GEAGERAGWEEQCPREKGREKERETEWARGRGRCRRRSAGSGAPP---RQPHRPRQRRT- 956
G + E G P+E+ + R R+RS +P + H PR R+
Sbjct: 1400 GSSQELDGKPSASPQERSESDSSPDSKPKTRTPLRQRSHSGSSPEVDSKSRHSPRLSRSG 1459
Query: 955 --PERSQRPR------GARQRCPER---GPR---RHRR-------RSQTPASPAARPSGP 839
PE +PR PE PR RH R R +P ++ S P
Sbjct: 1460 SSPEMKDKPRVLQRAQSGTDSSPEHKIPAPRALPRHSRSGSSSKERGPSPEGSSSSESSP 1519
Query: 838 WRPPSSCSPAQPQRRTRQP---CRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSW 668
P S + + R + +P P RR SSR T +R R +
Sbjct: 1520 EHAPKSRTARRGSRSSIEPKTKSHTPPRRRSSRSSPELTRKARVSRRSRSASSS------ 1573
Query: 667 HPPARRARRPGPWTRRSWKPAPPAAARPGTTWSCSRRACTRTKSPGSPVPWRRTRGQPPH 488
P R+R P P RRS P ++ T S S R SP + RR R P
Sbjct: 1574 --PEIRSRTP-PRRRRS----PSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPK 1626
Query: 487 YRRASQPGRRSRRSWRPPT-------CPQQQSRRCGRSGRG*RRRPRRSGGAGHQRRPSG 329
R + RSRR T Q SRR RS R RR GG+G+ R
Sbjct: 1627 PRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPT 1686
Query: 328 QSQPEPAASAGC*DRCST*DQGRRQTRSCRGRRVRTRTRMRAQPLARPGPKARHTRSMS 152
+ + +S R T R+++RS R+R RA P A H RS S
Sbjct: 1687 RQESSRTSSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASP-------ATHRRSRS 1738
Score = 49.7 bits (117), Expect = 1e-04
Identities = 75/303 (24%), Positives = 109/303 (35%), Gaps = 22/303 (7%)
Frame = -1
Query: 970 RQRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAARPSG--PWRPPSSCSPAQPQR 797
R +PERS P P + +P AA PS P P S SP
Sbjct: 251 RPSPSPERSS----TGPELPAPTPLLVEQHVDSPRPLAAIPSSQEPVNPSSEASPT---- 302
Query: 796 RTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARRPGPWTRRS 617
R P + PE+ P S + C PQ +G S P P P +RR
Sbjct: 303 RGCSPPKSPEKPPQSTSSESCPPS---PQPTKGSRHASS-----SPESLKPTPAPGSRRE 354
Query: 616 WKPAPPAAARPGTTWSCSRRACTRTKSPGSPVPWRRTRGQPPHYRRASQPGRR-SRRSWR 440
+P + R S R KS R R + P +R R ++R
Sbjct: 355 ISSSPTSKNR-------SHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHS 407
Query: 439 PPTCPQ-QQSRRCGRSGRG*RRRPRRSGGAGHQRRPS------------------GQSQP 317
PQ ++SR R G+ R P+R G + +RP G+S
Sbjct: 408 RSRSPQWRRSRSAQRWGKS--RSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHS 465
Query: 316 EPAASAGC*DRCST*DQGRRQTRSCRGRRVRTRTRMRAQPLARPGPKARHTRSMSALRYQ 137
A+ G + +GR ++R+ RR R+RT R + +R + +RS + R +
Sbjct: 466 RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRR 525
Query: 136 KPT 128
T
Sbjct: 526 SRT 528
Score = 45.1 bits (105), Expect = 0.003
Identities = 64/266 (24%), Positives = 94/266 (35%), Gaps = 22/266 (8%)
Frame = -1
Query: 1150 SPQRPEQCQGEAGERAGWEEQCPREKGREKERETEWARGRGRC--------RRRSAGSGA 995
S PE + R PR K + R G C RRS +
Sbjct: 645 SNSSPEMKKSHVSSRRSRSLSSPRSKAKSLRRSLS---GSSPCPKQKSQTPTRRSRSGSS 701
Query: 994 PPRQPHRPRQRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASP------AARPSG--P 839
PP+Q + R++ S +P+ P G + + + A+P + P G
Sbjct: 702 PPKQKSKTPPRQSRSNSPQPKVKSGTPPRPGSVTNMQADECTATPQRQSHSESSPDGEVK 761
Query: 838 WRPPS--SCSPAQPQRRTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWH 665
R PS SCS + P+ ++ P R R SS + T PRG + S S
Sbjct: 762 SRTPSRQSCSGSSPRVKSSTPPRQSPSRSSSPQPKVKT-----VISPRGRSHSSS--SSP 814
Query: 664 PPARRARRPGPWTRRSWKPAPPAAARPGTTWSCSRRACTRTKSPGSPV----PWRRTRGQ 497
P+R R RS P P +R R + +R+ SP S + P R +
Sbjct: 815 SPSRVTSRTPQRKSRSISPCPKVDSR-------LRHSRSRSSSPDSKMELGTPLRHSGST 867
Query: 496 PPHYRRASQPGRRSRRSWRPPTCPQQ 419
P+ + Q S CPQ+
Sbjct: 868 SPYLKSMLQTPPDQNLSGSKSPCPQK 893
Score = 36.6 bits (83), Expect = 0.97
Identities = 73/314 (23%), Positives = 109/314 (34%), Gaps = 41/314 (13%)
Frame = -1
Query: 967 QRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAAR--------------------- 851
Q+RTP R +R A + PR RRS++ +SP R
Sbjct: 1271 QQRTPSR-ERSSSASPELKDGLPRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDT 1329
Query: 850 PSGPWRPPSSCSPAQPQRRTRQPCRMPERRPSS--RHQQRCTEGW*RPQRPRGGTRC--- 686
P P R S C + + Q R PSS R+ + T PQR R G+
Sbjct: 1330 PQTPSRGRSECDSSPEPKALPQTPRARSHSPSSPERNNKSVT-----PQRERSGSESSVE 1384
Query: 685 *S*WSWHPPARRARRPGPWTRRSWKPAPPAAARPGTTWSCSRRACTRTKSPGSPVPWRRT 506
+ P +R+ R G KP+ R + S + TRT P+ R
Sbjct: 1385 QKNLARTSPGQRS-RSGSSQELDGKPSASPQERSESDSSPDSKPKTRT-----PLRQRSH 1438
Query: 505 RGQPPHYRRASQPGRRSRRSWRPPTCPQQ----QSRRCGRSGRG*RRRP--------RRS 362
G P S+ R RS P + Q + G + P RS
Sbjct: 1439 SGSSPEVDSKSRHSPRLSRSGSSPEMKDKPRVLQRAQSGTDSSPEHKIPAPRALPRHSRS 1498
Query: 361 GGAGHQRRPSGQSQPEPAASAGC*DRCST*DQGRRQTRSCRGRR---VRTRTRMRAQPLA 191
G + +R PS + +S + T +G R + + + R R+ + L
Sbjct: 1499 GSSSKERGPSPEGSSSSESSPEHAPKSRTARRGSRSSIEPKTKSHTPPRRRSSRSSPELT 1558
Query: 190 RPGPKARHTRSMSA 149
R +R +RS S+
Sbjct: 1559 RKARVSRRSRSASS 1572
Score = 36.2 bits (82), Expect = 1.3
Identities = 53/157 (33%), Positives = 67/157 (41%), Gaps = 9/157 (5%)
Frame = +2
Query: 335 RSPLMASPA*PAWTPTLSPPRTATPSTLLLRTCRRSPASSRTAAWL*CSAVMWRLTASSS 514
RS SPA W + S AT R+ R+P SR + S V R + S +
Sbjct: 1711 RSRSRTSPA--PWKRSRSRASPATHR----RSRSRTPLISRRRSRSRTSPVSRRRSRSVN 1764
Query: 515 PRHWATRALG-----PRASTPAATPSRPRAC----RCWRSRLPASSRPRPRTPGPPRWRM 667
R +RA R+ TP T R R+ R RSR P +R R R+ PP R
Sbjct: 1765 RRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRSRTPPVTRRRSRSRTPPVTRR 1824
Query: 668 PRPSASTPGAATRTLRPSPSLCTPLLVTRRRSPLRHS 778
S ++P T R S S +P VTRRRS R S
Sbjct: 1825 RSRSRTSP----VTRRRSRSRTSP--VTRRRSRSRTS 1855
Score = 35.8 bits (81), Expect = 1.7
Identities = 45/171 (26%), Positives = 59/171 (34%), Gaps = 10/171 (5%)
Frame = -1
Query: 1084 PREKGREKERETEWARGRGRCR-----RRSAGSGAPPRQPHRPRQRRTP-----ERSQRP 935
P + R + R + R R R R RR + S P R R R P RS+ P
Sbjct: 1832 PVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTP 1891
Query: 934 RGARQRCPERGPRRHRRRSQTPASPAARPSGPWRPPSSCSPAQPQRRTRQPCRMPERRPS 755
R+R R P RRRS++ AAR + TR P + R S
Sbjct: 1892 LLPRKRSRSRSPLAIRRRSRSRTPRAARGK--------------RSLTRSPPAIRRRSAS 1937
Query: 754 SRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARRPGPWTRRSWKPAP 602
R R G+R P A + R ++R S P P
Sbjct: 1938 GSSSDRSRSATPPATRNHSGSRT------PPVALSSSRMSCFSRPSMSPTP 1982
Score = 34.7 bits (78), Expect = 3.7
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = -3
Query: 1022 PAALCRKRRTTSAASSATSAADSRTESTASGCSSALP*AGTT*APAAKSDTSFSSSSPQR 843
P RKRR++S++SS++S++ S + S++S SS+ S +S SSSS
Sbjct: 2456 PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSS------------SSSSSSSSSSSSS 2503
Query: 842 ALAPS-FQL*PSTTTAPDTPALP 777
+ +PS + P P +P P
Sbjct: 2504 SSSPSPAKPGPQALPKPASPKKP 2526
Score = 34.7 bits (78), Expect = 3.7
Identities = 37/155 (23%), Positives = 59/155 (37%), Gaps = 24/155 (15%)
Frame = +2
Query: 386 SPPRTATPSTLLLRTCRRSP-------------ASSRTAAWL*CSAVMWRLTASSSPRHW 526
+PPR + + + C +P SRT + CS R+ +S+ PR
Sbjct: 727 TPPRPGSVTNMQADECTATPQRQSHSESSPDGEVKSRTPSRQSCSGSSPRVKSSTPPRQS 786
Query: 527 ATRALGPRASTPAATPSRPRACRCWRSRLPASSRPRPRTPGPPRWRMPRPSASTPGAATR 706
+R+ P+ R R+ +SS P P R ++ TP +R
Sbjct: 787 PSRSSSPQPKVKTVISPRGRS-------HSSSSSPSP----------SRVTSRTPQRKSR 829
Query: 707 TLRPSPSLCTPLLVTRRRS-----------PLRHS 778
++ P P + + L +R RS PLRHS
Sbjct: 830 SISPCPKVDSRLRHSRSRSSSPDSKMELGTPLRHS 864
Score = 34.3 bits (77), Expect = 4.8
Identities = 27/78 (34%), Positives = 36/78 (45%), Gaps = 4/78 (5%)
Frame = +2
Query: 545 PRASTPAATPSRPRACRCWRSRLPASSRPRPRTPGPP-RWRMPRPSASTPGAATRTLRPS 721
PR + ++P R R R ASS P R+ PP R R P S+ P +R+ R
Sbjct: 1546 PRRRSSRSSPELTRKARVSRRSRSASSSPEIRSRTPPRRRRSPSVSSPEPTEKSRSSRRR 1605
Query: 722 PSLCTPLLVT---RRRSP 766
S+ +P T R RSP
Sbjct: 1606 RSVSSPRTKTTSRRGRSP 1623
>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
[Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
elegans RSR-1 protein (corresponding sequence F28D9.1)
[Caenorhabditis elegans]
Length = 601
Score = 80.9 bits (198), Expect = 5e-14
Identities = 94/321 (29%), Positives = 137/321 (42%), Gaps = 9/321 (2%)
Frame = -1
Query: 1096 EEQCPREKGREKERETEWARGRGRCRRRSAGSGAPPRQPHRPRQRRTPERSQRPRGARQR 917
+E+ E+ R +E E + R+++ S A + PR+RR+P S+ P AR+R
Sbjct: 261 DEKEREEESRRREIERKKRHEEAELRQKAIASVAARAKSGSPRRRRSPSASKSPPPARRR 320
Query: 916 -----CPERGPRRHRRRSQTPASPAAR---PSGPWRPPSSCSPAQPQRRTRQPCRMPERR 761
P+R + RS++P +PA R PS PP +P + + R++ P R
Sbjct: 321 RSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPP--APKRAKSRSKSPPARRRRS 378
Query: 760 PSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARRPGPWTRRSWKPAPPAAARPG 581
PS+ R +R +R + PPARR R P S +PPA
Sbjct: 379 PSASKSPPAP----RRRRSPSKSRSPAPKREIPPARRRRSP------SASKSPPA----- 423
Query: 580 TTWSCSRRACTRTKSPGSPVPWRRTRGQPPHYRRASQPGRRSRRSWRPPTCPQQQSRRCG 401
+RA +R+KSP +P R R P ++ P R RRS P PQ RR
Sbjct: 424 -----PKRAKSRSKSPPAP----RRRRSP---SQSKSPAPRRRRS--PSKSPQAPRRRRS 469
Query: 400 RSGRG*RR-RPRRSGGAGHQRRPSGQSQPEPAASAGC*DRCST*DQGRRQTRSCRGRRVR 224
SG R R RRS A +RR S Q + P R S R ++ RR R
Sbjct: 470 PSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRR------RRSPSSSSRSRSPPPPPRRPR 523
Query: 223 TRTRMRAQPLARPGPKARHTR 161
+ +A P+A P+ + R
Sbjct: 524 QDSEQQA-PVAVKSPEMKKRR 543
Score = 66.2 bits (160), Expect = 1e-09
Identities = 99/381 (25%), Positives = 137/381 (34%), Gaps = 45/381 (11%)
Frame = -1
Query: 1123 GEAGERAGWEEQCPREKGREKERETEWARGRGRCRRRSAGSGAPPRQPHRPRQRRTPERS 944
G A E+A +++ P R+T R GS A R +RR+P R
Sbjct: 162 GPAREKAVRDDRIPARA--LSPRKTPPRRNASPGGDGGGGSPAARRGGSAGNRRRSPPRR 219
Query: 943 QRPR-GARQRCPERGPRRHRRRSQTPASPAARPSGPWRPPSSCSPAQPQRRTRQPCRMPE 767
PR G+ +R R P R R SP AR P + ++ + R E
Sbjct: 220 GSPRRGSPRRDTRRSPPRRR------GSPPARGGDRRDRREDRRPVRDEKEREEESRRRE 273
Query: 766 RRPSSRHQQ-------------RCTEGW*RPQRPRGGTRC*S*WSWHPPARRAR------ 644
RH++ R G R +R ++ PPARR R
Sbjct: 274 IERKKRHEEAELRQKAIASVAARAKSGSPRRRRSPSASKS------PPPARRRRSPSQSK 327
Query: 643 RPGPWTRRSWKPAPPAAARPGTTWSCS-------RRACTRTKSP------------GSPV 521
P P +S +PPA AR + S S +RA +R+KSP P
Sbjct: 328 SPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPA 387
Query: 520 PWRR---TRGQPPHYRRASQPGRRSR---RSWRPPTCPQQQSRRCGRSGRG*RRRPRRSG 359
P RR ++ + P +R P RR R S PP + +SR RR P +S
Sbjct: 388 PRRRRSPSKSRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSK 447
Query: 358 GAGHQRRPSGQSQPEPAASAGC*DRCST*DQGRRQTRSCRGRRVRTRTRMRAQPLARPGP 179
+RR S P Q R+ RS G + R+ R R P A P
Sbjct: 448 SPAPRRRRSPSKSP----------------QAPRRRRSPSGSKSRS-PRRRRSPAAAPRR 490
Query: 178 KARHTRSMSALRYQKPTGCSR 116
+ R S R + P+ SR
Sbjct: 491 RQSPQRRRSPRRRRSPSSSSR 511
Score = 55.1 bits (131), Expect = 3e-06
Identities = 43/139 (30%), Positives = 63/139 (44%), Gaps = 9/139 (6%)
Frame = -1
Query: 1027 RCRRRSAGSGAPP---------RQPHRPRQRRTPERSQRPRGARQRCPERGPRRHRRRSQ 875
R RR + S +PP + P PR+RR+P +S+ P R+R P + P+ RRR
Sbjct: 410 RRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRR-- 467
Query: 874 TPASPAARPSGPWRPPSSCSPAQPQRRTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGG 695
SP+ S R S + A +R++ Q R P RR S R P+RPR
Sbjct: 468 --RSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPPPPPRRPRQD 525
Query: 694 TRC*S*WSWHPPARRARRP 638
+ + + P + RRP
Sbjct: 526 SEQQAPVAVKSPEMKKRRP 544
Score = 45.4 bits (106), Expect = 0.002
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Frame = -1
Query: 1138 PEQCQGEAGERAGWEEQCPREKGREKERETEWARGRGRCRRRSAGSGAPPRQPHRPRQRR 959
P Q + A R + P+ R R ++ R RRRS A PR+ P++RR
Sbjct: 443 PSQSKSPAPRRRRSPSKSPQAPRRR--RSPSGSKSRSPRRRRSPA--AAPRRRQSPQRRR 498
Query: 958 TPERSQRP-RGARQRCPERGPRRHRRRSQ--------TPASPAARPSGPWRPPSSCSPAQ 806
+P R + P +R R P PRR R+ S+ +P RP+ S S A+
Sbjct: 499 SPRRRRSPSSSSRSRSPPPPPRRPRQDSEQQAPVAVKSPEMKKRRPNDTDSDVSVDSEAE 558
Query: 805 PQRRTRQPCRMPERRPSSRHQQ 740
+RR ++ + E++ + +H++
Sbjct: 559 EERRRKKAKK--EKKAAKKHKK 578
Score = 41.2 bits (95), Expect = 0.040
Identities = 38/127 (29%), Positives = 49/127 (37%), Gaps = 5/127 (3%)
Frame = -1
Query: 1150 SPQRPEQCQGEAGERAGWEEQCPREKGREKERETEWARGRGRCRRRSAGSGAPPRQPHRP 971
SP + R+ + P R K R R R + S AP R+
Sbjct: 399 SPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPS 458
Query: 970 RQRRTPERSQRPRGARQRCP--ERGPRRHRRRSQTP---ASPAARPSGPWRPPSSCSPAQ 806
+ + P R + P G++ R P R P RR Q+P SP R S P S SP
Sbjct: 459 KSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRS-PSSSSRSRSPPP 517
Query: 805 PQRRTRQ 785
P RR RQ
Sbjct: 518 PPRRPRQ 524
Score = 40.8 bits (94), Expect = 0.052
Identities = 72/278 (25%), Positives = 98/278 (34%)
Frame = +2
Query: 434 RRSPASSRTAAWL*CSAVMWRLTASSSPRHWATRALGPRASTPAATPSRPRACRCWRSRL 613
RRSP++S++ R + S + A + R+ +P A R R+ +S
Sbjct: 305 RRSPSASKSPP------PARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPP 358
Query: 614 PASSRPRPRTPGPPRWRMPRPSASTPGAATRTLRPSPSLCTPLLVTRRRSPLRHSARLAC 793
PA R + R+ PP R PSAS A R RRRSP + +R
Sbjct: 359 PAPKRAKSRSKSPPARRRRSPSASKSPPAPR---------------RRRSPSK--SRSPA 401
Query: 794 PALWLCWATAGRRAPRPAGASCWRSWCLTSPPVPTWSPLRATLTSTPRPLTPFWSPPLTW 973
P + RR P+ + SPP P + R+ SPP
Sbjct: 402 PKREI---PPARRRRSPSASK--------SPPAPKRAKSRSK------------SPPAPR 438
Query: 974 PMRLPRWCAASCRAPPAPTPPPRPLRLPLLLPPLLPRALLLPARPLPRFPLALLWSLRTS 1153
R P + +P PR R P P PR P+ R P R
Sbjct: 439 RRRSP---------SQSKSPAPRRRRSP-SKSPQAPRRRRSPSGSKSRSP-------RRR 481
Query: 1154 RSPSPTRPSSTSPTLAAPTHLPRLRSW*TPSRTCCPPP 1267
RSP+ SP R RS + SR+ PPP
Sbjct: 482 RSPAAAPRRRQSPQRRRSPR--RRRSPSSSSRSRSPPP 517
>pir||T43481 probable mucin DKFZp434C196.1 - human (fragment)
gi|6599134|emb|CAB63715.1| hypothetical protein [Homo
sapiens]
Length = 580
Score = 76.6 bits (187), Expect = 8e-13
Identities = 103/352 (29%), Positives = 137/352 (38%), Gaps = 13/352 (3%)
Frame = +2
Query: 203 RSHARPRPHASPST*ASLT-----ASLISSGTTVLATCRSSWFRLALT*RSPLMASPA*P 367
R+ +R P PS ASL ASL +T L + R+ LM +P P
Sbjct: 27 RTPSRASPTRMPSR-ASLKMTPFRASLTKMESTALLRTLPRASLMRTPTRASLMRTP--P 83
Query: 368 AWTPTLSPPRTATPSTLLLRTCRRSPASSRTAAWL*CSAVMWRLTASSSPRHWATRALGP 547
+PT PPR + + RR P R + SP + P
Sbjct: 84 RASPTRKPPRASPRTPSRASPTRRLP----------------RASPMGSPHRASPMRTPP 127
Query: 548 RASTPAATPSRPRACRCWRSRLPASSRPRPRTPGPPRWRMPRPSAS-TPGAATRTLRPSP 724
RAS P TPS S P + PR G P PR A+ +P A+ T PS
Sbjct: 128 RAS-PTGTPSTASPTGTPSSASPTGTPPRASPTGTP----PRAWATRSPSTASLTRTPSR 182
Query: 725 SLCT--PLLVTRRRSPLRHSARL---ACPALWLCWATAGRRAPR--PAGASCWRSWCLTS 883
+ T P + R+P R S R+ A P A+ RR PR P S +
Sbjct: 183 ASLTRWPPRASPTRTPPRESPRMSHRASPTRTPPRASPTRRPPRASPTRTPPRESLRTSH 242
Query: 884 PPVPTWSPLRATLTSTPRPLTPFWSPPLTWPMRLPRWCAASCRAPPAPTPPPRPLRLPLL 1063
PT P RA+ T P +P SPP PM PR AS R PP +P P R L
Sbjct: 243 RASPTRMPPRASPTRRPPRASPTGSPPRASPMTPPR---ASPRTPPRASPTTTPSRASLT 299
Query: 1064 LPPLLPRALLLPARPLPRFPLALLWSLRTSRSPSPTRPSSTSPTLAAPTHLP 1219
P P+R + + ++ +R+P P+ T P+ A+PT P
Sbjct: 300 RTPSWASPTTTPSR---ASLMKMESTVSITRTPPRASPTGT-PSRASPTGTP 347
Score = 65.5 bits (158), Expect = 2e-09
Identities = 104/323 (32%), Positives = 125/323 (38%), Gaps = 25/323 (7%)
Frame = +2
Query: 380 TLSPPRTAT---PSTL-LLRT-CRRSPASSRTAAWL*CSAVMWRLTASSSPRHWATRALG 544
T +PPR + PST L RT R SP + A L + LT S T
Sbjct: 8 TRTPPRASLMRRPSTASLTRTPSRASPTRMPSRASLKMTPFRASLTKMESTALLRTL--- 64
Query: 545 PRASTPAATPSRPRACRCWRSRLPASSRPR--PRTPG--PPRWRMPRPSASTPGAATRTL 712
PRAS TP+R R P PR PRTP P R+PR AS G
Sbjct: 65 PRASL-MRTPTRASLMRTPPRASPTRKPPRASPRTPSRASPTRRLPR--ASPMG------ 115
Query: 713 RPSPSLCTPLLVTRRRSPLRHSARLACPALWLCWATAGRRAPR--PAGASCWRSWCLTSP 886
SP +P+ R SP + A P A+ PR P G R+W SP
Sbjct: 116 --SPHRASPMRTPPRASPTG-TPSTASPTGTPSSASPTGTPPRASPTGTPP-RAWATRSP 171
Query: 887 PVP--TWSPLRATLTSTPRPLTPFWSPPLTWPMRLPRWCAASCRAPPAPTPPPRPLRL-P 1057
T +P RA+LT P +P +PP P R A+ R PP +P RP R P
Sbjct: 172 STASLTRTPSRASLTRWPPRASPTRTPPRESPRMSHR--ASPTRTPPRASPTRRPPRASP 229
Query: 1058 LLLPP---------LLPRALLLPARPLPRFPLALLWSLRTSRSPSPTRPSSTSPTLAAPT 1210
PP P + A P R P R S + SP R S +P A+P
Sbjct: 230 TRTPPRESLRTSHRASPTRMPPRASPTRRPP-------RASPTGSPPRASPMTPPRASPR 282
Query: 1211 HLPRLRSW*TPSRTCC--PPPWA 1273
PR TPSR P WA
Sbjct: 283 TPPRASPTTTPSRASLTRTPSWA 305
Score = 56.6 bits (135), Expect = 9e-07
Identities = 97/324 (29%), Positives = 114/324 (34%), Gaps = 29/324 (8%)
Frame = -1
Query: 1015 RSAGSGAPPR-----QPHRPRQRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAAR 851
R++ +G PPR P RTP R+ R + P R P R R ASP
Sbjct: 155 RASPTGTPPRAWATRSPSTASLTRTPSRASLTRWPPRASPTRTPPRESPRMSHRASPTRT 214
Query: 850 P--SGPWRPPSSCSPAQ-PQRRT------RQPCRMPERRPSSRHQQRCTEGW*RPQRPRG 698
P + P R P SP + P R + P RMP R +R R + P G
Sbjct: 215 PPRASPTRRPPRASPTRTPPRESLRTSHRASPTRMPPRASPTRRPPRAS--------PTG 266
Query: 697 GTRC*S*WSWHPPARRARRPGPWTRRSWKPAPPAAARPGTTWSCSRRACTRTKSPGSP-- 524
PP R P T P P A P TT SR + TRT S SP
Sbjct: 267 S----------PP-----RASPMTPPRASPRTPPRASPTTT--PSRASLTRTPSWASPTT 309
Query: 523 VPWRR-----------TRGQPPHYRRASQPGRRSRRSWRPPTCPQQQSRRCGRSGRG*RR 377
P R TR P RAS G SR S P P + S S
Sbjct: 310 TPSRASLMKMESTVSITRTPP----RASPTGTPSRAS--PTGTPSRASLTGSPSRASLTG 363
Query: 376 RPRRSGGAGHQRRPSGQSQPEPAASAGC*DRCST*DQGRRQTRSCRGRRVRTRTRMRAQP 197
P R+ G R S P A+ G R S G T S TRT RA
Sbjct: 364 TPSRASLIGTPSRASLIGTPSRASLTGTPPRASL--TGTSSTASL------TRTPSRAS- 414
Query: 196 LARPGPKARHTR--SMSALRYQKP 131
L R + TR SM++L P
Sbjct: 415 LTRTQSSSSLTRTPSMASLTRTPP 438
Score = 48.5 bits (114), Expect = 2e-04
Identities = 72/261 (27%), Positives = 87/261 (32%), Gaps = 21/261 (8%)
Frame = -1
Query: 997 APPRQPHRPRQRRTPERSQRPRGARQRCPERGPRRHRRRSQTP--ASPAARPSGPW--RP 830
+P PHR RTP R+ P G G + TP ASP P W R
Sbjct: 112 SPMGSPHRASPMRTPPRAS-PTGTPSTASPTGTPSSASPTGTPPRASPTGTPPRAWATRS 170
Query: 829 PSSCSPAQPQRR---TRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPP 659
PS+ S + R TR P R R R R + R R R P
Sbjct: 171 PSTASLTRTPSRASLTRWPPRASPTRTPPRESPRMSH---RASPTRTPPRA-------SP 220
Query: 658 ARRARRPGPWTRRSWKPAPPAAARPGTTWSCSRRACTRTKSPGSP----------VPWRR 509
RR R P TR + + + R T R + TR SP P R
Sbjct: 221 TRRPPRASP-TRTPPRESLRTSHRASPTRMPPRASPTRRPPRASPTGSPPRASPMTPPRA 279
Query: 508 TRGQPPHYRRASQPGRRS---RRSW-RPPTCPQQQSRRCGRSGRG*RRRPRRSGGAGHQR 341
+ PP + P R S SW P T P + S S R P R+ G
Sbjct: 280 SPRTPPRASPTTTPSRASLTRTPSWASPTTTPSRASLMKMESTVSITRTPPRASPTGTPS 339
Query: 340 RPSGQSQPEPAASAGC*DRCS 278
R S P A+ G R S
Sbjct: 340 RASPTGTPSRASLTGSPSRAS 360
Score = 46.2 bits (108), Expect = 0.001
Identities = 82/298 (27%), Positives = 99/298 (32%), Gaps = 12/298 (4%)
Frame = -1
Query: 991 PRQPHRPRQRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAARP--SGPWRPPSSC 818
PR HR RTP R+ R + P R P R R+ ASP P + P R P
Sbjct: 203 PRMSHRASPTRTPPRASPTRRPPRASPTRTPPRESLRTSHRASPTRMPPRASPTRRPPRA 262
Query: 817 SP----------AQPQRRTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSW 668
SP P+ R P R SR T W P S
Sbjct: 263 SPTGSPPRASPMTPPRASPRTPPRASPTTTPSRASLTRTPSWASPTTTPSRASLMKMEST 322
Query: 667 HPPARRARRPGPWTRRSWKPAPPAAARPGTTWSCSRRACTRTKSPGSPVPWRRTRGQPPH 488
R R P S +R T S SR + T T S S + G P
Sbjct: 323 VSITRTPPRASPTGTPSRASPTGTPSRASLTGSPSRASLTGTPSRASLI------GTP-- 374
Query: 487 YRRASQPGRRSRRSWRPPTCPQQQSRRCGRSGRG*RRRPRRSGGAGHQRRPSGQSQPEPA 308
RAS G SR S P + S S R P R+ Q S P A
Sbjct: 375 -SRASLIGTPSRASL--TGTPPRASLTGTSSTASLTRTPSRASLTRTQSSSSLTRTPSMA 431
Query: 307 ASAGC*DRCST*DQGRRQTRSCRGRRVRTRTRMRAQPLARPGPKARHTRSMSALRYQK 134
+ R S TR+ R TRT RA L R P+A TR+ S + ++
Sbjct: 432 SLTRTPPRASL-------TRT-PPRASLTRTPPRAS-LTRTPPRASLTRTPSMVSLKR 480
Score = 44.7 bits (104), Expect = 0.004
Identities = 95/360 (26%), Positives = 131/360 (36%), Gaps = 17/360 (4%)
Frame = +2
Query: 20 THEPAKALVSPFDCADESSGCRTSIRTSTRASSRAPGGLLVTQCAHRARVPGLWPWPC*W 199
T P +A SP +S RT R S R S RA + + + R P
Sbjct: 212 TRTPPRA--SPTRRPPRASPTRTPPRESLRTSHRASPTRMPPRASPTRRPP--------- 260
Query: 200 LRSHARPRPHASPST*ASLTASLISSGTTVLATCRSSWFRLALT*RSPLMASPA*PAWTP 379
R P SP + +T S T A+ ++ R +LT R+P ASP
Sbjct: 261 -----RASPTGSPPRASPMTPPRASPRTPPRASPTTTPSRASLT-RTPSWASP------- 307
Query: 380 TLSPPRTATPSTLLLRTCRRSPASSRTAAWL*CSAVMWRLTASSSPRHWATRALGPRAST 559
T TPS L + + +RT + R + + +P + RAS
Sbjct: 308 ------TTTPSRASLMKMESTVSITRTPPRASPTGTPSRASPTGTPSRASLTGSPSRASL 361
Query: 560 PAATPSRPRACRC-WRSRLPASSRPRPRTPGPPRWRMPRPSAS-----TPGAA--TRTLR 715
TPSR R+ L + T PPR + S++ TP A TRT
Sbjct: 362 -TGTPSRASLIGTPSRASLIGTPSRASLTGTPPRASLTGTSSTASLTRTPSRASLTRTQS 420
Query: 716 PSPSLCTPLLVTRRRSPLRHSARLACPALWLCWATAGRRAPR------PAGASCWRSWCL 877
S TP + + R+P R S P A+ R PR P AS R+ +
Sbjct: 421 SSSLTRTPSMASLTRTPPRASLTRTPPR-----ASLTRTPPRASLTRTPPRASLTRTPSM 475
Query: 878 TSPPVPTWSPLRATLTSTPRPLTPFWSPPLTWPMRLPRWCAASCRAPPAP---TPPPRPL 1048
S SP RA+LT TP + +P R P + + P A TPP L
Sbjct: 476 VSLKR---SPSRASLTRTPSRASLTMTPSRASLTRTPSTASLTGTPPTASLTRTPPTASL 532
Score = 43.9 bits (102), Expect = 0.006
Identities = 72/277 (25%), Positives = 90/277 (31%), Gaps = 9/277 (3%)
Frame = -1
Query: 988 RQPHRPRQRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAARPSG------PWRPP 827
R P R RTP R+ R + P PR R S T P A P G P R P
Sbjct: 71 RTPTRASLMRTPPRASPTR----KPPRASPRTPSRASPTRRLPRASPMGSPHRASPMRTP 126
Query: 826 SSCSPAQPQRRTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPP--AR 653
SP T P P + R + P+ W+ P A
Sbjct: 127 PRASPTGTP-STASPTGTPSSASPTGTPPRASPTGTPPRA----------WATRSPSTAS 175
Query: 652 RARRPGPWTRRSWKP-APPAAARPGTTWSCSRRACTRTKSPGSPVPWRRTRGQPPHYRRA 476
R P + W P A P P + S RA + T++P P RR PP
Sbjct: 176 LTRTPSRASLTRWPPRASPTRTPPRESPRMSHRA-SPTRTPPRASPTRR----PPRASPT 230
Query: 475 SQPGRRSRRSWRPPTCPQQQSRRCGRSGRG*RRRPRRSGGAGHQRRPSGQSQPEPAASAG 296
P R S R+ + P + R + RRP R+ G R S + P
Sbjct: 231 RTPPRESLRTSHRAS-PTRMPPRASPT-----RRPPRASPTGSPPRASPMTPP------- 277
Query: 295 C*DRCST*DQGRRQTRSCRGRRVRTRTRMRAQPLARP 185
R S R + R TRT A P P
Sbjct: 278 ---RASPRTPPRASPTTTPSRASLTRTPSWASPTTTP 311
Score = 43.5 bits (101), Expect = 0.008
Identities = 83/311 (26%), Positives = 116/311 (36%), Gaps = 2/311 (0%)
Frame = +2
Query: 338 SPLMASPA*PAWTPTLSPPRTATPSTLLLRTCRRSPASSRTAAWL*CSAVMWRLTASSSP 517
SP ASP P +PPR A+P+T R + +RT +W + R +
Sbjct: 267 SPPRASPMTPPRASPRTPPR-ASPTTTPSRA-----SLTRTPSWASPTTTPSRASLMKME 320
Query: 518 RHWATRALGPRASTPAATPSRPRACRCWRSRLPASSRPRPRTPGPPRWRMPRPSASTPGA 697
+ PRAS P TPSR P + R G P AS G
Sbjct: 321 STVSITRTPPRAS-PTGTPSRAS---------PTGTPSRASLTGSP------SRASLTGT 364
Query: 698 ATRTLRPSPSLCTPLLVTRRRSPLRHSARLACPALWLCWATAGRRAPR-PAGASCWRSWC 874
+R + + TP + +P R S P L ++ R P+ AS R+
Sbjct: 365 PSR----ASLIGTPSRASLIGTPSRASLTGTPPRASLTGTSSTASLTRTPSRASLTRTQS 420
Query: 875 LTSPPVPTWSPLRATLTSTPRPLTPFWSPPLTWPMRLPRWCAASCRAPPAPTPPPRPLRL 1054
+S T +P A+LT TP + +PP A+ R PP + P R
Sbjct: 421 SSS---LTRTPSMASLTRTPPRASLTRTPPR----------ASLTRTPPRASLTRTPPRA 467
Query: 1055 PLLLPPLLPRALLLPAR-PLPRFPLALLWSLRTSRSPSPTRPSSTSPTLAAPTHLPRLRS 1231
L P + P+R L R P ++ SR+ S TR ST+ P R+
Sbjct: 468 SLTRTPSMVSLKRSPSRASLTRTPSRASLTMTPSRA-SLTRTPSTASLTGTPPTASLTRT 526
Query: 1232 W*TPSRTCCPP 1264
T S T PP
Sbjct: 527 PPTASLTRSPP 537
>gb|AAH36187.1| SRRM1 protein [Homo sapiens]
Length = 904
Score = 76.3 bits (186), Expect = 1e-12
Identities = 103/364 (28%), Positives = 139/364 (37%), Gaps = 53/364 (14%)
Frame = -1
Query: 1096 EEQCPREKGREKERETEWARGRGRCRRRSAG-SGAPPRQPHR-------PRQRRTPERSQ 941
E+ +EK +EK + +R + R R RS S PR+ HR PR+R +P R
Sbjct: 262 EKNSKKEKEKEKTQPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRP 321
Query: 940 RPRGARQRCPER---GPRRHRRRSQTPASPAARPSGPWRPPSSCSPAQPQRRTRQPCRMP 770
P R+R P R P RH RRS++P R S SS S + R+R P + P
Sbjct: 322 SP---RRRTPPRRMPPPPRH-RRSRSPVRRRRRSSASLSGSSSSSSSS---RSRSPPKKP 374
Query: 769 ERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARRPGPWT---RRSWKPAPP 599
+R SS P R+ RR P RR +P+PP
Sbjct: 375 PKRTSS------------------------------PPRKTRRLSPSASPPRRRHRPSPP 404
Query: 598 AAARPGTTWSCSRRACTRTK------SPG----------------SPVPWRRTR------ 503
A P T S + + RT+ SPG SP P + R
Sbjct: 405 ATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSE 464
Query: 502 -GQPPHYRRASQPGRRSRRSWRPPTCPQQQSRRCGRSGRG*RRRPRRS----GGAGHQRR 338
+ + A+ + RR +R QQ S G S RP+RS G G +RR
Sbjct: 465 SEEDKGGKMAAADSVQQRRQYRRQN--QQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRR 522
Query: 337 --PSGQSQPEPAASAGC*DRCST*DQGRRQTRSCRGRRVRT----RTRMRAQPLARPGPK 176
PS + P P + R++ S RGRR R+ TR R P P P+
Sbjct: 523 HSPSRSASPSP--------------RKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPR 568
Query: 175 ARHT 164
R T
Sbjct: 569 RRRT 572
Score = 69.7 bits (169), Expect = 1e-10
Identities = 69/229 (30%), Positives = 91/229 (39%), Gaps = 8/229 (3%)
Frame = -1
Query: 970 RQRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAARPSGPWRPPSSCSPAQPQRRT 791
R+R +P RS P R+R E PR RRRS +P P R S SPA P RR
Sbjct: 520 RRRHSPSRSASP-SPRKRQKETSPRGRRRRSPSPP--------PTRRRRSPSPAPPPRRR 570
Query: 790 RQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARRPGPWTRRSWK 611
R P P RR S +R R PR + PP +R P P +R
Sbjct: 571 RTPTPPPRRRTPSPPPRR------RSPSPR---------RYSPPIQRRYSPSPPPKRRTA 615
Query: 610 PAPPAAARPGTTWSCSRRACTRTKSP---GSPVPWRRTRGQPPHYRRASQPGRRSRRSWR 440
PP R + +R + + P SPV RR+ +R+ S P R +R +
Sbjct: 616 SPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARS 675
Query: 439 PPTCPQQQSRRCGRSGRG*RRRPRRSGGAGHQRR-----PSGQSQPEPA 308
P Q ++R S R R P+ S RR P + P P+
Sbjct: 676 P-----QPNKRHSPSPR--PRAPQTSSSPPPVRRGASSSPQRRQSPSPS 717
Score = 60.5 bits (145), Expect = 6e-08
Identities = 82/293 (27%), Positives = 105/293 (34%), Gaps = 12/293 (4%)
Frame = -1
Query: 1147 PQRPEQCQGEAGER---AGWEEQCPREKGREKERETEWARGRGRC-----RRRSAGSGAP 992
P+R GE G R + P + R+KE R R RRRS P
Sbjct: 507 PKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPP 566
Query: 991 PRQ---PHRPRQRRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAARPSGPWRPPSS 821
PR+ P P +RRTP R R R P RR S +P S P P
Sbjct: 567 PRRRRTPTPPPRRRTPSPPPRRRSPSPR--RYSPPIQRRYSPSPPPKRRTASPPPPPKRR 624
Query: 820 CSPAQPQRRTRQPCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARR 641
SP+ P +R P++R S ++R + R G+ S R AR
Sbjct: 625 ASPSPPPKRRVSHSPPPKQRSSPVTKRRSPS---LSSKHRKGS------SPSRSTREARS 675
Query: 640 PGPWTRRSWKPAPPAAARPGTTWSCSRRACTRTKSPGSPVPWRRTRGQPPHYRRASQPGR 461
P P R S P P A ++ SP P RR P R++ P
Sbjct: 676 PQPNKRHSPSPRPRA-----------------PQTSSSPPPVRRGASSSPQRRQSPSPST 718
Query: 460 RS-RRSWRPPTCPQQQSRRCGRSGRG*RRRPRRSGGAGHQRRPSGQSQPEPAA 305
R RR R P P++ + S + RR R SG PEPAA
Sbjct: 719 RPIRRVSRTPE-PKKIKKAASPSPQSVRR-------VSSSRSVSG--SPEPAA 761
Score = 56.6 bits (135), Expect = 9e-07
Identities = 87/331 (26%), Positives = 125/331 (37%), Gaps = 7/331 (2%)
Frame = -1
Query: 1135 EQCQGEAGERAGWEEQCPREKGREKERETEWARGRGRC---RRRSAGSGAPPRQPHRPRQ 965
+Q Q E + A ++Q + R+KE + R R RRR + S + PR+
Sbjct: 132 KQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSHSPRRRKSRSPS-------PRR 184
Query: 964 RRTPERSQRPRGARQRCPERGPRRHRRRSQTPASPAARPSGPWRPPSSCSPAQPQRRTRQ 785
R +P R +R R + R P RHR +S++P SPA P + + +P + ++
Sbjct: 185 RSSPVRRERKR-SHSRSP-----RHRTKSRSP-SPA-----PEKKEKTPELPEPSVKVKE 232
Query: 784 PCRMPERRPSSRHQQRCTEGW*RPQRPRGGTRC*S*WSWHPPARRARRPGPWTRRSWKPA 605
P S + T + +P P + P P + S K
Sbjct: 233 P---------SVQEATSTSDILKVPKPE-------------PIPEPKEPSP-EKNSKKEK 269
Query: 604 PPAAARPGTTWSCSRRACTRTKSPGSPVPWRRTRGQPPHY--RRASQPGRR--SRRSWRP 437
+P + R+ TR++SP P RR R + Y RR P RR RR P
Sbjct: 270 EKEKTQPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPP 329
Query: 436 PTCPQQQSRRCGRSGRG*RRRPRRSGGAGHQRRPSGQSQPEPAASAGC*DRCST*DQGRR 257
P R RS RRR S S +S+ P R S+ R
Sbjct: 330 RRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPP---KRTSS---PPR 383
Query: 256 QTRSCRGRRVRTRTRMRAQPLARPGPKARHT 164
+TR R R R P A P PK RH+
Sbjct: 384 KTRRLSPSASPPRRRHRPSPPATPPPKTRHS 414
Score = 44.7 bits (104), Expect = 0.004
Identities = 66/252 (26%), Positives = 93/252 (36%), Gaps = 15/252 (5%)
Frame = +2
Query: 509 SSPRHWATRALGP------RASTPAATPSRPRACRCWRSRLPASSRPRPRTPGPPRWRMP 670
+SPR R+ P R+ +PA P R R R S PR R+P P R+ P
Sbjct: 540 TSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPP 599
Query: 671 --RPSASTPGAATRTLRPSPSLCTPLLVTRRRSPLRHSARLACPALWLCWATAGRRAP-- 838
R + +P RT P P P P + + P RR+P
Sbjct: 600 IQRRYSPSPPPKRRTASPPP---PPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSL 656
Query: 839 ---RPAGASCWRSWCLTSPPVPTWSPLRATLTSTPRPLTP--FWSPPLTWPMRLPRWCAA 1003
G+S RS P P + +PRP P SPP P+R R ++
Sbjct: 657 SSKHRKGSSPSRSTREARSPQP-----NKRHSPSPRPRAPQTSSSPP---PVR--RGASS 706
Query: 1004 SCRAPPAPTPPPRPLRLPLLLPPLLPRALLLPARPLPRFPLALLWSLRTSRSPSPTRPSS 1183
S + +P+P RP+R P P+ + A P P+ + S S SP P
Sbjct: 707 SPQRRQSPSPSTRPIRRVSRTPE--PKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKP 764
Query: 1184 TSPTLAAPTHLP 1219
+P + P
Sbjct: 765 PAPPSPVQSQSP 776
Score = 38.9 bits (89), Expect = 0.20
Identities = 48/173 (27%), Positives = 63/173 (35%), Gaps = 3/173 (1%)
Frame = +2
Query: 548 RASTPAATPSRPRACRCWRSRLPASSRPRPRTPGPPRWRMPRPSAS---TPGAATRTLRP 718
+ T + SR ++ RSR P+ +RPR R R PR S P RT P
Sbjct: 271 KEKTQPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRT--P 328
Query: 719 SPSLCTPLLVTRRRSPLRHSARLACPALWLCWATAGRRAPRPAGASCWRSWCLTSPPVPT 898
+ P R RSP+R R + +++ R+ P PP T
Sbjct: 329 PRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPP----------KKPPKRT 378
Query: 899 WSPLRATLTSTPRPLTPFWSPPLTWPMRLPRWCAASCRAPPAPTPPPRPLRLP 1057
SP R T R L+P SPP R P TPPP+ P
Sbjct: 379 SSPPRKT-----RRLSPSASPP-----------RRRHRPSPPATPPPKTRHSP 415
Score = 38.1 bits (87), Expect = 0.33
Identities = 42/142 (29%), Positives = 56/142 (38%)
Frame = +2
Query: 827 RRAPRPAGASCWRSWCLTSPPVPTWSPLRATLTSTPRPLTPFWSPPLTWPMRLPRWCAAS 1006
RR+P P RS PP R T T PR TP SPP PR +
Sbjct: 547 RRSPSPPPTRRRRSPSPAPPP-----RRRRTPTPPPRRRTP--SPPPRRRSPSPRRYSPP 599
Query: 1007 CRAPPAPTPPPRPLRLPLLLPPLLPRALLLPARPLPRFPLALLWSLRTSRSPSPTRPSST 1186
+ +P+PPP+ PP P+ P+ P R R S SP P + SS
Sbjct: 600 IQRRYSPSPPPKRRTAS---PPPPPKRRASPSPPPKR---------RVSHSPPPKQRSSP 647
Query: 1187 SPTLAAPTHLPRLRSW*TPSRT 1252
+P+ + R +PSR+
Sbjct: 648 VTKRRSPSLSSKHRKGSSPSRS 669
