Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000110A_C01 KCC000110A_c01
(885 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00004761.1| COG0624: Acetylornithine deacetylase/Succinyl... 60 4e-08
ref|NP_879331.1| ribonuclease E [Bordetella pertussis] gi|335713... 59 1e-07
ref|NP_890304.1| ribonuclease E [Bordetella bronchiseptica] gi|3... 57 3e-07
dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvir... 55 1e-06
ref|NP_885485.1| ribonuclease E [Bordetella parapertussis] gi|33... 55 1e-06
>ref|ZP_00004761.1| COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate
desuccinylase and related deacylases [Rhodobacter
sphaeroides]
Length = 793
Score = 60.5 bits (145), Expect = 4e-08
Identities = 63/188 (33%), Positives = 69/188 (36%), Gaps = 21/188 (11%)
Frame = +3
Query: 381 RHPHHRRG*GGR------------HPHAAPRPHHRRRGRKRQQHWWSSAALRR--RTERH 518
+HP +R GGR HP PRP G R + +A R R
Sbjct: 126 QHPGRQRALGGRTGRGPRACGGPPHPRRRPRPAGGEDGLSRIRPLLGTAGAHRAGRGLGG 185
Query: 519 QRPAAAATGAPAI----PLPAAAGAADRSSPTGSGPHPCRRRSRGRRWRRRRRLSAAHDR 686
QRP A + P P AA AADR G PCRR RGR
Sbjct: 186 QRPRDRADAGAGLRHAPPRPFAARAADRGGRAGG--EPCRRAGRGRP------------- 230
Query: 687 LSAPHRQWQPRPAPATAAAAAGAHAAAAVPA--GPRGPRAPHAAGADPARQPPRRRQQRR 860
APH PR P A HAA P GPRGPR A P RRR RR
Sbjct: 231 RVAPHAA-PPRDPPHDGCARLCRHAAGRHPYQHGPRGPRGRGGAARSGGLWPSRRRGARR 289
Query: 861 -WRRRPIG 881
RR +G
Sbjct: 290 LLARRALG 297
Score = 48.1 bits (113), Expect = 2e-04
Identities = 56/177 (31%), Positives = 62/177 (34%), Gaps = 9/177 (5%)
Frame = +3
Query: 339 RVGRARPERYHQQLRH-PHHRRG*GGRHPHAAPRPHHRRRGRKRQQHWWSSAALRRRTER 515
R G RP R + P R G GG R HH RRG R R R
Sbjct: 47 RSGSRRPARGRDRAHPLPGARHGDGGAPHGRHRRRHHPRRGP------------RCRGLR 94
Query: 516 HQRPAAAATGAPAIPLPAAAGAADRSSPTGSGPHPCRRRSRGRRWRRRRRLSAAHDRLSA 695
RPA G P G + G G HP R+R+ G R R R
Sbjct: 95 RGRPAPGGGGPWRGPRSGGQGGRG-AQGRGRGQHPGRQRALGGRTGRGPRACG-----GP 148
Query: 696 PHRQWQPRPAPA--------TAAAAAGAHAAAAVPAGPRGPRAPHAAGADPARQPPR 842
PH + +PRPA AGAH A G R PR AGA PPR
Sbjct: 149 PHPRRRPRPAGGEDGLSRIRPLLGTAGAHRAGRGLGGQR-PRDRADAGAGLRHAPPR 204
Score = 35.4 bits (80), Expect = 1.3
Identities = 62/212 (29%), Positives = 69/212 (32%), Gaps = 48/212 (22%)
Frame = +3
Query: 192 GTSGSRWHRARSGLHFKRPGDN-------RYACRRRSSVATNVDDTVSEHSGWATWRVGR 350
GT+G+ HRA GL +RP D R+A R A D G R GR
Sbjct: 172 GTAGA--HRAGRGLGGQRPRDRADAGAGLRHAPPR--PFAARAADRGGRAGGEPCRRAGR 227
Query: 351 ARPE--RYHQQLRHPHHR------RG*GGRHPHA-APRPHHRRRGRKRQQHWWSSAALRR 503
RP + R P H R GRHP+ PR R G R W S RR
Sbjct: 228 GRPRVAPHAAPPRDPPHDGCARLCRHAAGRHPYQHGPRGPRGRGGAARSGGLWPS---RR 284
Query: 504 RTER-------------------------HQRPAAAATG----APAIPLPAAAGAADRSS 596
R R H R A G AP A DR
Sbjct: 285 RGARRLLARRALGPAGRARQRGLHAPSRWHDRGGAPPRGPRGRAPCHHRARGPSARDRDQ 344
Query: 597 PTGSG---PHPCRRRSRGRRWRRRRRLSAAHD 683
P P P RR+RGRR L A D
Sbjct: 345 PRRLARGIPQPRVRRNRGRRDPSMTDLPLAED 376
Score = 34.3 bits (77), Expect = 2.8
Identities = 56/183 (30%), Positives = 57/183 (30%), Gaps = 46/183 (25%)
Frame = -3
Query: 871 RRRH--RRCCRRRGGWRAGSAPAACGA-RGPR--GPAGTAAAAWAPAAAAAVAGAGRGCH 707
RRRH RR R RG R AP G RGPR G G A G GRG H
Sbjct: 79 RRRHHPRRGPRCRGLRRGRPAPGGGGPWRGPRSGGQGGRGAQ-----------GRGRGQH 127
Query: 706 C--------RCGAESRSCAALSRLRRRHR------------------------------R 641
R G R+C RRR R R
Sbjct: 128 PGRQRALGGRTGRGPRACGGPPHPRRRPRPAGGEDGLSRIRPLLGTAGAHRAGRGLGGQR 187
Query: 640 PRDRRRQGCGPEPVGLERSAAPAAAGNGIAGAPVAAAAGRWCRSVRRRRAA---DDHQCC 470
PRDR G G AA AA G AG AGR V A H C
Sbjct: 188 PRDRADAGAGLRHAPPRPFAARAADRGGRAGGEPCRRAGRGRPRVAPHAAPPRDPPHDGC 247
Query: 469 CRL 461
RL
Sbjct: 248 ARL 250
Score = 33.5 bits (75), Expect = 4.8
Identities = 33/119 (27%), Positives = 43/119 (35%), Gaps = 1/119 (0%)
Frame = +3
Query: 528 AAAATGAPAIPLPAAAGA-ADRSSPTGSGPHPCRRRSRGRRWRRRRRLSAAHDRLSAPHR 704
++ P PLP +DR + SG RR +RGR R A H APH
Sbjct: 21 SSVCAALPRRPLPRVPHELSDRPTHPRSGS---RRPARGRD-RAHPLPGARHGDGGAPHG 76
Query: 705 QWQPRPAPATAAAAAGAHAAAAVPAGPRGPRAPHAAGADPARQPPRRRQQRRWRRRPIG 881
+ + R P G P G R P + G R R Q R+R +G
Sbjct: 77 RHRRRHHPRRGPRCRGLRRGRPAPGGGGPWRGPRSGGQGGRGAQGRGRGQHPGRQRALG 135
>ref|NP_879331.1| ribonuclease E [Bordetella pertussis] gi|33571330|emb|CAE44805.1|
ribonuclease E [Bordetella pertussis]
Length = 1042
Score = 58.5 bits (140), Expect = 1e-07
Identities = 62/204 (30%), Positives = 78/204 (37%), Gaps = 29/204 (14%)
Frame = +3
Query: 345 GRARPERYHQQLRHPHHRRG*GGRHPHAAPRPHHRRRGRKRQQHW--WSSAALRRRTERH 518
G+ R H R+ H R G H + HH R GR++++ RTER
Sbjct: 597 GQNRRGERHGSDRNRHRRNEPRGEHAESGDARHHVRGGRRQEERGERGERGQKEARTERE 656
Query: 519 QRPAAAATGAPAIPLPAAAGAADRSSPTGSGPHPCRRRSRGRRWRRRRR----------- 665
Q A G P +R S +G R R RGRR R R R
Sbjct: 657 QTQQQQAAGQP---------RQERPSTAETGEEGGRGRGRGRRGRGRGRREEGQTDTPMT 707
Query: 666 ------LSAAHDRLSAPHRQWQPRPAPATAAAAAGAHAAAA-----VPA-----GPRGPR 797
+ A +A + Q PAPA AAAAA A AA P G G
Sbjct: 708 EQENMVAALAETVATALPEKRQAAPAPAAAAAAALTVAEAASSNEQAPVTEDADGIDGID 767
Query: 798 APHAAGADPARQPPRRRQQRRWRR 869
A AGA+ P R+R++RR RR
Sbjct: 768 ANADAGAETGTDPERKRRRRRSRR 791
Score = 38.9 bits (89), Expect = 0.12
Identities = 44/157 (28%), Positives = 56/157 (35%), Gaps = 49/157 (31%)
Frame = +3
Query: 510 ERHQRPAAAATGAPAIPLPAAAGA-------------------ADRSSPTGSGPHPCRRR 632
+R PA AA A A+ + AA + AD + TG+ P RRR
Sbjct: 727 KRQAAPAPAAAAAAALTVAEAASSNEQAPVTEDADGIDGIDANADAGAETGTDPERKRRR 786
Query: 633 SRGRRWRRRRR---------LSAAHDR----------LSAPHRQWQPRPAPATAAA---- 743
R RR RR + + A D + P + +P A A
Sbjct: 787 RRSRRGRRSQEDGSTVNAEGVEGADDEQADAPAGVADIETPAQPAEPETVAAPVAVSVAA 846
Query: 744 ---AAGAHAAAAVPAGPRGPRAPHA----AGADPARQ 833
AA AAA PA P+ AP A A AD A Q
Sbjct: 847 DEPAATIETAAAEPAAPQATEAPQAEPVVAAADTAPQ 883
>ref|NP_890304.1| ribonuclease E [Bordetella bronchiseptica]
gi|33577186|emb|CAE35743.1| ribonuclease E [Bordetella
bronchiseptica]
Length = 1046
Score = 57.4 bits (137), Expect = 3e-07
Identities = 57/197 (28%), Positives = 78/197 (38%), Gaps = 22/197 (11%)
Frame = +3
Query: 345 GRARPERYHQQLRHPHHRRG*GGRHPHAAPRPHHRRRGRKRQQHW--WSSAALRRRTERH 518
G+ R H R+ H R G H + HH R GR++++ RTER
Sbjct: 597 GQDRRGERHGSDRNRHRRNEPRGDHAESGDARHHVRGGRRQEERGERGERGQKEARTERE 656
Query: 519 QRPAAAATGAPAIPLPAAAGAADRSSPTGSGPHPCRRRSRGRR---------WRRRRRLS 671
Q A G P P+ A + G R R RGRR + ++
Sbjct: 657 QTQQQQAAGQPRQERPSTAETGEE----GGRGRGRRGRGRGRREEGQTDTPMTEQENMVA 712
Query: 672 AAHDRLSA---PHRQWQPRPAPATAAAAAGAHAAAAVPAGP--------RGPRAPHAAGA 818
A + ++A RQ P PA A AAA A AA++ P G A AGA
Sbjct: 713 ALAETVAAALPEKRQAAPAPAAAAAAALTVAEAASSNELAPVAEDADGIDGIDANVDAGA 772
Query: 819 DPARQPPRRRQQRRWRR 869
+ P R+R++RR RR
Sbjct: 773 ETGSDPERKRRRRRSRR 789
Score = 37.4 bits (85), Expect = 0.34
Identities = 45/157 (28%), Positives = 56/157 (35%), Gaps = 49/157 (31%)
Frame = +3
Query: 510 ERHQRPAAAATGAPAIPLPAAAGA-------------------ADRSSPTGSGPHPCRRR 632
+R PA AA A A+ + AA + D + TGS P RRR
Sbjct: 725 KRQAAPAPAAAAAAALTVAEAASSNELAPVAEDADGIDGIDANVDAGAETGSDPERKRRR 784
Query: 633 SRGRRWRRRRR----------LSAAHDRLSAP------HRQWQPRPAPATAA-------- 740
R RR RR + A +++ AP QP + AA
Sbjct: 785 RRSRRGRRSQEDGSTVNAEGVEGADDEQVDAPAGVADIETPAQPAESETVAAPVAVSVAA 844
Query: 741 --AAAGAHAAAAVPAGPRGPRAPHA----AGADPARQ 833
AA AAA PA P+ AP A A AD A Q
Sbjct: 845 DEPAATIETAAAEPAAPQATEAPRAEPVVAAADTAPQ 881
>dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvirus 1]
Length = 3326
Score = 55.5 bits (132), Expect = 1e-06
Identities = 63/191 (32%), Positives = 81/191 (41%), Gaps = 11/191 (5%)
Frame = +2
Query: 329 GNLARRARQTRTIPPTTTTPASSPRLRRATP---SRSSPPASSPPRPQTATTLVVVCSPT 499
G ++ R +R P ++P PR R A P S ++ PP P+T T SPT
Sbjct: 2754 GRVSLPRRASRQGRPAPSSPLQRPRRRAARPAVGSLTNLADPHPPGPETPTP----TSPT 2809
Query: 500 A-PHRTTPTARCCRHRRPCDSITSSSRCRRPLKPHRFWPT-------PLPPAVAWTAVAA 655
A PH TT +A P +++ RP P PT PPA A A A
Sbjct: 2810 ANPHATTASA------TPAPPPVAATGPTRPTSPATPTPTVAAAGRASAPPAPAAPAAPA 2863
Query: 656 A*AA*CGA*SALCAAPAVAATTRPSNSSSSSRRPRRCRSSSWAPGAPRSTCCRRGPGTPA 835
A AA A A AAPA A + ++ P ++ AP AP + P PA
Sbjct: 2864 APAA--PAAPAAPAAPAAPAAPAAPAAPAAPAAP----AAPAAPAAPAAPAAPAAPAAPA 2917
Query: 836 TAPAAAAAVAA 868
APAA AA AA
Sbjct: 2918 -APAAPAAPAA 2927
Score = 47.0 bits (110), Expect = 4e-04
Identities = 58/187 (31%), Positives = 71/187 (37%), Gaps = 20/187 (10%)
Frame = +2
Query: 368 PPTTTTPASSPRLRR--ATPSRSSPPASSPPRPQT--ATTLVVVCSPTAPHRTTPTARCC 535
PP P SPR + ++P A PP PQT A AP R + R
Sbjct: 2704 PPDPPPPDPSPRPNELGGGETAAAPSAPDPPPPQTVRAPERPRDDRAPAPGRVSLPRRAS 2763
Query: 536 RHRRPCDS--------------ITSSSRCRRPLKPHRFWPTPLPPAVAWTAVAAA*AA*C 673
R RP S + S + P P PTP P A A
Sbjct: 2764 RQGRPAPSSPLQRPRRRAARPAVGSLTNLADPHPPGPETPTPTSPTANPHATTA------ 2817
Query: 674 GA*SALCAAPAVAAT--TRPSNSSSSSRRPRRCRSSSWAPGAPRSTCCRRGPGTPATAPA 847
SA A P VAAT TRP++ ++ + +S AP AP + P PA APA
Sbjct: 2818 ---SATPAPPPVAATGPTRPTSPATPTPTVAAAGRAS-APPAPAAPAAPAAPAAPA-APA 2872
Query: 848 AAAAVAA 868
A AA AA
Sbjct: 2873 APAAPAA 2879
Score = 41.2 bits (95), Expect = 0.023
Identities = 37/104 (35%), Positives = 40/104 (37%), Gaps = 1/104 (0%)
Frame = +3
Query: 528 AAAATGAPAIPLPAAAGAADRSSPTGSGPHPCRRRSRGRRWRRRRRLSAAHDRLSAPHRQ 707
A AA APA P AA AA + + P AA +AP
Sbjct: 2888 APAAPAAPAAPAAPAAPAAPAAPAAPAAP-------------------AAPAAPAAPAAP 2928
Query: 708 WQPRPAPATAA-AAAGAHAAAAVPAGPRGPRAPHAAGADPARQP 836
P PA AA AA A AA A PA P P AP A A A P
Sbjct: 2929 AAPAPAAVPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAP 2972
Score = 36.6 bits (83), Expect = 0.57
Identities = 62/223 (27%), Positives = 79/223 (34%), Gaps = 15/223 (6%)
Frame = +2
Query: 257 PIRLQTSLIGRYQCRRHSLRTQRLGNLARRA-----------RQTRTIP-PTTTTPASSP 400
P L+ GR+ +R SL T R AR A QTR P TPAS P
Sbjct: 359 PSSLEDLSAGRHHPKRASLPT-RTRRSARHAATPFSRGSGGDEQTRPAAGPRPPTPASRP 417
Query: 401 RLRRATPSRSSPPA-SSPPRPQTATTLVVVCSPTAPHRTTPTARCCRHRRPCDSITSSSR 577
A P+ +PP +PP P T PT PT R P + +
Sbjct: 418 PTPGAPPTPGAPPTPGAPPTPGAPPT---PAGPTTASSEPPTP---AGRPPTPAGRPPTP 471
Query: 578 CRRPLKPHRFWPTPL--PPAVAWTAVAAA*AA*CGA*SALCAAPAVAATTRPSNSSSSSR 751
RP P PTP PP A A PA T P+N ++SS
Sbjct: 472 AGRPPTPAGRPPTPAGRPPTPAGRPPTPA---------GRPPTPAGRPPT-PANPTASSE 521
Query: 752 RPRRCRSSSWAPGAPRSTCCRRGPGTPATAPAAAAAVAATTNR 880
P + GAP + + P +T A A+ A +R
Sbjct: 522 PP-----TPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDR 559
Score = 35.4 bits (80), Expect = 1.3
Identities = 47/151 (31%), Positives = 51/151 (33%), Gaps = 35/151 (23%)
Frame = +3
Query: 528 AAAATGAPAIPLPAAA--GAADRSSPTGSGPHPCRRRSRGRRWRRRRRLSA----AHDRL 689
A+ G P PLP AA A DRS P P P R S R RR A A R
Sbjct: 2623 ASDDAGDPPPPLPPAARPAAPDRSVPP---PRPAPRPSEPAVQSRARRPDAPPQSARPRT 2679
Query: 690 S--------------------APHRQWQPRPAPATAAAAAGAHAAAAVPAGPRGP----- 794
APH P P P+ G AA P+ P P
Sbjct: 2680 PRDDPGPPAAPSTLPPSPPPPAPHPPDPPPPDPSPRPNELGGGETAAAPSAPDPPPPQTV 2739
Query: 795 RAPHAAGADPARQPPR----RRQQRRWRRRP 875
RAP D A P R RR R+ R P
Sbjct: 2740 RAPERPRDDRAPAPGRVSLPRRASRQGRPAP 2770
Score = 34.7 bits (78), Expect = 2.2
Identities = 50/178 (28%), Positives = 64/178 (35%), Gaps = 8/178 (4%)
Frame = +2
Query: 368 PPTTTTPASSPRLRRATPSRSSPPASSPPRPQTATTLVVVCSPTAPHRTTPTARCCRHRR 547
PP PA+ P A P RS PP PRP P AP ++
Sbjct: 2630 PPPPLPPAARP----AAPDRSVPPPRPAPRPSEPAVQSRARRPDAPPQSARPRTPRDDPG 2685
Query: 548 PCDSITSSSRCRRPLKPHRFWPTPLPPAVAWTAVAAA*AA*CGA*SALCAAPAVAATTRP 727
P + ++ P PH P P P+ + A AAP+ A P
Sbjct: 2686 PPAAPSTLPPSPPPPAPHPPDPPPPDPSPRPNELGGGETA---------AAPS-APDPPP 2735
Query: 728 SNSSSSSRRPRRCRSSSWAPG---APR--STCCRRGPGTPATAP---AAAAAVAATTN 877
+ + RPR R+ APG PR S R P +P P AA AV + TN
Sbjct: 2736 PQTVRAPERPRDDRAP--APGRVSLPRRASRQGRPAPSSPLQRPRRRAARPAVGSLTN 2791
>ref|NP_885485.1| ribonuclease E [Bordetella parapertussis] gi|33574271|emb|CAE38603.1|
ribonuclease E [Bordetella parapertussis]
Length = 1041
Score = 55.5 bits (132), Expect = 1e-06
Identities = 56/197 (28%), Positives = 77/197 (38%), Gaps = 22/197 (11%)
Frame = +3
Query: 345 GRARPERYHQQLRHPHHRRG*GGRHPHAAPRPHHRRRGRKRQQHW--WSSAALRRRTERH 518
G+ R H R+ H R G H + HH R GR++++ R ER
Sbjct: 597 GQDRRGERHGSDRNRHRRNEPRGDHAESGDARHHVRGGRRQEERGERGERGQKEARAERE 656
Query: 519 QRPAAAATGAPAIPLPAAAGAADRSSPTGSGPHPCRRRSRGRR---------WRRRRRLS 671
Q A G P P+ A + G R R RGRR + ++
Sbjct: 657 QTQQQQAAGQPRQERPSTAETGEE----GGRGRGRRGRGRGRREEGQTDTPMTEQENMVA 712
Query: 672 AAHDRLSA---PHRQWQPRPAPATAAAAAGAHAAAAVPAGP--------RGPRAPHAAGA 818
A + ++A RQ P PA A AAA A AA++ P G A AGA
Sbjct: 713 ALAETVAAALPEKRQAAPAPAAAAAAALTVAEAASSNELAPVAEDADGIDGIDANVDAGA 772
Query: 819 DPARQPPRRRQQRRWRR 869
+ P R+R++RR RR
Sbjct: 773 ETGTDPERKRRRRRSRR 789
Score = 34.7 bits (78), Expect = 2.2
Identities = 43/157 (27%), Positives = 55/157 (34%), Gaps = 49/157 (31%)
Frame = +3
Query: 510 ERHQRPAAAATGAPAIPLPAAAGA-------------------ADRSSPTGSGPHPCRRR 632
+R PA AA A A+ + AA + D + TG+ P RRR
Sbjct: 725 KRQAAPAPAAAAAAALTVAEAASSNELAPVAEDADGIDGIDANVDAGAETGTDPERKRRR 784
Query: 633 SRGRRWRRRRR----------LSAAHDRLSAP------HRQWQPRPAPATAA-------- 740
R RR RR + A +++ AP QP + AA
Sbjct: 785 RRSRRGRRSQEDGSTVNAEGVEGADDEQVDAPAGVADIETPAQPAESETVAAPVAVSVAA 844
Query: 741 --AAAGAHAAAAVPAGPRGPRAPHA----AGADPARQ 833
AA AAA P P+ AP A A AD A Q
Sbjct: 845 DEPAATIETAAAEPTAPQATEAPRAEPVVAAADTAPQ 881
