KCC000109A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000109A_C01 KCC000109A_c01
gctacatttAGAGTTGCCAAACATCAAGGGGCCATAGAAGACGTATCGCAAGCTGGTAAA
CGCTGCACTGGAAGCCCGAACCGTTTTGTGCCTCTCTCATAGCCGCGTTCCCGGCTGTGC
CTGGTCGTGATACCGTCTTTCAAATAGCTGCTTACCTGCTGTGAGGAATAACAGCTTGAA
TTGTGGCAACGAGGAGGCAGCAAACGAGGAACTAGTGGGATGCCCTCGCCCCCTTCCTTC
CTCTAGGTCTGCATGGTGGACATGGACAGCGATCTTAGGCCCAGCCCTGTCCCCAGGCCG
CGCGTTTTCCCGGTCGTCGGGACCGCTCCGGGCCCGCGATGTGGACACACCCTCACTGCC
ATTTCCGGCCCTGAAGGCGACCTCTCAAAGGCCAAGCTAGTGCTTTTTGGCGGTGCGACC
GCGCTGGAGGGCTCATCCGGCAAGAGCGAGAGCACACAGTCCACACCTGGTTCAGCTGCA
TCAGGCATTCGCCTGGCCGGCGCCACCAACGATGTGCACATTTTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000109A_C01 KCC000109A_c01
         (526 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_172318.1| protein serine/threonine phosphatase alpha -rel...    71  7e-12
ref|NP_180289.2| phospho protein phosphatase -related [Arabidops...    64  9e-10
pir||B84670 probable phosphoprotein phosphatase (EC 3.1.3.16) At...    64  9e-10
pir||T01385 probable phosphoprotein phosphatase (EC 3.1.3.16) T4...    60  1e-08
gb|AAM83219.1| AT4g03080/T4I9_4 [Arabidopsis thaliana]                 60  1e-08

>ref|NP_172318.1| protein serine/threonine phosphatase alpha -related [Arabidopsis
           thaliana]
          Length = 1018

 Score = 71.2 bits (173), Expect = 7e-12
 Identities = 51/116 (43%), Positives = 62/116 (52%), Gaps = 15/116 (12%)
 Frame = +1

Query: 223 PSPPSFL*VCMVDMDSDLRPSPVPRPRVFPVVGTA----------PGPRCGHTLTAIS-- 366
           P+P +        +  + +P+ V  PR  P               PGPRCGHTLTA+   
Sbjct: 57  PNPATSQQQAAAVVGQEQQPALVVGPRCAPTYSVVDAMMDKKEDGPGPRCGHTLTAVPAV 116

Query: 367 GPEGDLSKA--KLVLFGGATALEGSSGKSESTQSTPGSAAS-GIRLAGATNDVHIF 525
           G EG       +LVLFGGATALEG+SG +     TP SA S GIRLAGAT DVH +
Sbjct: 117 GDEGTPGYIGPRLVLFGGATALEGNSGGT----GTPTSAGSAGIRLAGATADVHCY 168

>ref|NP_180289.2| phospho protein phosphatase -related [Arabidopsis thaliana]
          Length = 822

 Score = 64.3 bits (155), Expect = 9e-10
 Identities = 39/70 (55%), Positives = 45/70 (63%), Gaps = 4/70 (5%)
 Frame = +1

Query: 328 PGPRCGHTLTAIS--GPEGDLSKA--KLVLFGGATALEGSSGKSESTQSTPGSAASGIRL 495
           PGPRCGHTLTA+   G EG  S    +L+LFGGATALEG+SG    T +   S  S   L
Sbjct: 91  PGPRCGHTLTAVPAVGEEGTSSYIGPRLILFGGATALEGNSG---GTGTPTSSNVSYAGL 147

Query: 496 AGATNDVHIF 525
           AGAT DVH +
Sbjct: 148 AGATADVHCY 157

>pir||B84670 probable phosphoprotein phosphatase (EC 3.1.3.16) At2g27210
           [similarity] - Arabidopsis thaliana
           gi|4646217|gb|AAD26883.1| putative phosphoprotein
           phosphatase [Arabidopsis thaliana]
          Length = 715

 Score = 64.3 bits (155), Expect = 9e-10
 Identities = 39/70 (55%), Positives = 45/70 (63%), Gaps = 4/70 (5%)
 Frame = +1

Query: 328 PGPRCGHTLTAIS--GPEGDLSKA--KLVLFGGATALEGSSGKSESTQSTPGSAASGIRL 495
           PGPRCGHTLTA+   G EG  S    +L+LFGGATALEG+SG    T +   S  S   L
Sbjct: 67  PGPRCGHTLTAVPAVGEEGTSSYIGPRLILFGGATALEGNSG---GTGTPTSSNVSYAGL 123

Query: 496 AGATNDVHIF 525
           AGAT DVH +
Sbjct: 124 AGATADVHCY 133

>pir||T01385 probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 -
           Arabidopsis thaliana gi|3924596|gb|AAC79097.1| putative
           phospho-ser/thr phosphatase [Arabidopsis thaliana]
           gi|7270178|emb|CAB77793.1| putative phospho-ser/thr
           phosphatase [Arabidopsis thaliana]
          Length = 894

 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 33/67 (49%), Positives = 41/67 (60%)
 Frame = +1

Query: 325 APGPRCGHTLTAISGPEGDLSKAKLVLFGGATALEGSSGKSESTQSTPGSAASGIRLAGA 504
           APGPRC HTLTA++  +      +L+LFGGATA+EG S           S+  GIRLAG 
Sbjct: 26  APGPRCAHTLTAVAATK--THGPRLILFGGATAIEGGS-----------SSVPGIRLAGV 72

Query: 505 TNDVHIF 525
           TN VH +
Sbjct: 73  TNTVHSY 79

>gb|AAM83219.1| AT4g03080/T4I9_4 [Arabidopsis thaliana]
          Length = 881

 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 33/67 (49%), Positives = 41/67 (60%)
 Frame = +1

Query: 325 APGPRCGHTLTAISGPEGDLSKAKLVLFGGATALEGSSGKSESTQSTPGSAASGIRLAGA 504
           APGPRC HTLTA++  +      +L+LFGGATA+EG S           S+  GIRLAG 
Sbjct: 26  APGPRCAHTLTAVAATK--THGPRLILFGGATAIEGGS-----------SSVPGIRLAGV 72

Query: 505 TNDVHIF 525
           TN VH +
Sbjct: 73  TNTVHSY 79



EST assemble image


clone accession position
1 MXL081c09_r BP097784 1 378
2 MXL010e12_r BP093589 10 318
3 CL05c09_r AV393585 17 526
4 MXL033a08_r BP094945 30 483




Chlamydomonas reinhardtii
Kazusa DNA Research Institute