KCC000104A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000104A_C01 KCC000104A_c01
gctatccggtgctggtggacccccagggccagggccgcgagtggatcaagaaccgcgagg
aggctaaccagctcaagaccACGCAGCTGAACGACAAGCTGTTCCGCAACCACCTGGAGG
AGTGCCTGGCCTTCGGCCGGCCGCTGCTGATTGAGAACATTGAGGAGGAGCTGGACCCGC
TGCTGGACCCCGTGCTGGAGCGGCGCCTGGTGAAGAAGGGCAAGACCTGGGTGGTGCCGC
TGGCGGATAAGGAGGTGGACTTTACGGAGACCTTCCGCCTCTTCTGCACCACGCGCCTGC
CCAACCCGCACTTCACGCCCGAGCTGAGCGCCAAGGTGACGGTGGTTGATTTCACCGTGA
CCATGGCGGGCCTGGAGGACCAGCTGCTGGGCAAGCTGATCAGCAAGGAGAAGAAGGAGC
TGGAGGACCAGCGCCAGCAGCTGCTGGAGGAGGTGCAGAGCTACAAGAAGCGCATCAAGC
AGCTGGAGGACGACCTGCTGTTCCGCCTGTCCAACAGCCAGGGCAACCTGCTGGACGACA
CGGAGCTGATTGACGTGCTGGCCGTCACCAAGCAGACCGCGCAGGACGTGAGCGAGAAGC
TGGCCAACGCCTCGGAGACCAACAAGCGCATCAACGAGGCGTGCGAGGAGTACCGCCCCG
TGGCCCACCGCGCCACGCTGCTGTACTTCCTGATTGCCGAGTTCTCGGTGGTCAACTGCA
TGTACCAGACCTCGCTGGCGCAGTTCAACCAGCTGTACGAGCTGGCCATCGACCGCAGTG
AGAAGGCCAACATGCCCTCCAAGCGCATCCACAACATCATCGAGTACATGACCTACGAGA
TCTACCTGTACGTGCAGCGCGGCCTGTTCGAGCGCCATAAAATCATCTTCGCGCTGATGC
TCACCAACAAGGTGTTGACGTCGGCGGGCAAGGTAAAGGCCACCGACCTGGACGTGTTCC
TGAAGGGAGGCGCCGCGCTGGACATCAACAGCGTGCGCAAGAAGCCCAAGGACTGGATCC
CCGACTCGGTCTGGCTCAACATCATTGCGCTGTCGGCCATGGACGCCTTCCGCGACATCC
CCGACTCCGTCTTCCGCAACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000104A_C01 KCC000104A_c01
         (1101 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm gi|...   710  0.0
ref|NP_001360.1| dynein, axonemal, heavy polypeptide 5 [Homo sap...   405  e-112
dbj|BAB13429.2| KIAA1603 protein [Homo sapiens]                       405  e-112
gb|AAK60624.1|AF356523_1 axonemal dynein heavy chain 8 short for...   403  e-111
ref|NP_038839.1| dynein, axonemal, heavy chain 8; dynein, axon, ...   403  e-111

>sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm gi|7441383|pir||T08044 dynein
            gamma heavy chain, outer-arm - Chlamydomonas reinhardtii
            gi|557716|gb|AAA50455.1| gamma heavy chain subunit of
            outer-arm dynein
          Length = 4485

 Score =  710 bits (1833), Expect = 0.0
 Identities = 362/367 (98%), Positives = 363/367 (98%), Gaps = 1/367 (0%)
 Frame = +3

Query: 3    YPVLVDPQGQGREWIKNREEANQLKTTQLNDKLFRNHLEECLAFGRPLLIENIEEELDPL 182
            YPVLVDPQGQGREWIKNREEANQLKTTQLNDKLFRNHLEECLAFGRPLLIENIEEELDPL
Sbjct: 3445 YPVLVDPQGQGREWIKNREEANQLKTTQLNDKLFRNHLEECLAFGRPLLIENIEEELDPL 3504

Query: 183  LDPVLERRLVKKGKTWVVPLADKEVDFTETFRLFCTTRLPNPHFTPELSAKVTVVDFTVT 362
            LDPVLERRLVKKGKTWVVPLADKEVDFTETFRLFCTTRLPNPHFTPELSAKVTVVDFTVT
Sbjct: 3505 LDPVLERRLVKKGKTWVVPLADKEVDFTETFRLFCTTRLPNPHFTPELSAKVTVVDFTVT 3564

Query: 363  MAGLEDQLLGKLISKEKKELEDQRQQLLEEVQSYKKRIKQLEDDLLFRLSNSQGNLLDD- 539
            MAGLEDQLLGKLISKEKKELEDQRQQLLEEVQSYKKRIKQLEDDLL RLSNSQGNLLD+ 
Sbjct: 3565 MAGLEDQLLGKLISKEKKELEDQRQQLLEEVQSYKKRIKQLEDDLLCRLSNSQGNLLDEH 3624

Query: 540  TELIDVLAVTKQTAQDVSEKLANASETNKRINEACEEYRPVAHRATLLYFLIAEFSVVNC 719
             ELIDVLAVTKQTAQDVSEKLANASETNKRINEACEEYRPVAHRATLLYFLIAEFSVVNC
Sbjct: 3625 QELIDVLAVTKQTAQDVSEKLANASETNKRINEACEEYRPVAHRATLLYFLIAEFSVVNC 3684

Query: 720  MYQTSLAQFNQLYELAIDRSEKANMPSKRIHNIIEYMTYEIYLYVQRGLFERHKIIFALM 899
            MYQTSLAQFNQLYELAIDRSEKANMPSKRIHNIIEYMTYEIYLYVQRGLFERHKIIFALM
Sbjct: 3685 MYQTSLAQFNQLYELAIDRSEKANMPSKRIHNIIEYMTYEIYLYVQRGLFERHKIIFALM 3744

Query: 900  LTNKVLTSAGKVKATDLDVFLKGGAALDINSVRKKPKDWIPDSVWLNIIALSAMDAFRDI 1079
            LTNKVLTSAGKVKATDLDVFLKGGAALDINSVRKKPKDWIPD VWLNIIALSAMDAFRDI
Sbjct: 3745 LTNKVLTSAGKVKATDLDVFLKGGAALDINSVRKKPKDWIPDLVWLNIIALSAMDAFRDI 3804

Query: 1080 PDSVFRN 1100
            PDSVFRN
Sbjct: 3805 PDSVFRN 3811

>ref|NP_001360.1| dynein, axonemal, heavy polypeptide 5 [Homo sapiens]
            gi|18874272|gb|AAK92217.1| axonemal dynein heavy chain
            DNAH5 [Homo sapiens]
          Length = 4624

 Score =  405 bits (1041), Expect = e-112
 Identities = 198/366 (54%), Positives = 273/366 (74%)
 Frame = +3

Query: 3    YPVLVDPQGQGREWIKNREEANQLKTTQLNDKLFRNHLEECLAFGRPLLIENIEEELDPL 182
            YP+L+DPQ QG+ WIKN+E  N+L+ T LN K FRNHLE+ L+ GRPLLIE++ EELDP 
Sbjct: 3600 YPLLIDPQTQGKIWIKNKESRNELQITSLNHKYFRNHLEDSLSLGRPLLIEDVGEELDPA 3659

Query: 183  LDPVLERRLVKKGKTWVVPLADKEVDFTETFRLFCTTRLPNPHFTPELSAKVTVVDFTVT 362
            LD VLER  +K G T+ V + DKEVD  + FRL+ TT+LPNP +TPE+SA+ +++DFTVT
Sbjct: 3660 LDNVLERNFIKTGSTFKVKVGDKEVDVLDGFRLYITTKLPNPAYTPEISARTSIIDFTVT 3719

Query: 363  MAGLEDQLLGKLISKEKKELEDQRQQLLEEVQSYKKRIKQLEDDLLFRLSNSQGNLLDDT 542
            M GLEDQLLG++I  EK+ELE +R  L+E+V + K+R+K+LED+LL+RL+++QG+L++D 
Sbjct: 3720 MKGLEDQLLGRVILTEKQELEKERTHLMEDVTANKRRMKELEDNLLYRLTSTQGSLVEDE 3779

Query: 543  ELIDVLAVTKQTAQDVSEKLANASETNKRINEACEEYRPVAHRATLLYFLIAEFSVVNCM 722
             LI VL+ TK+TA++V++KL  ++ET  +IN A EEYRPVA R ++LYFLI E  +VN M
Sbjct: 3780 SLIVVLSNTKRTAEEVTQKLEISAETEVQINSAREEYRPVATRGSILYFLITEMRLVNEM 3839

Query: 723  YQTSLAQFNQLYELAIDRSEKANMPSKRIHNIIEYMTYEIYLYVQRGLFERHKIIFALML 902
            YQTSL QF  L++L++ RS K+ + SKRI NIIE+MTYE+Y Y  RGL+E HK +F L+L
Sbjct: 3840 YQTSLRQFLGLFDLSLARSVKSPITSKRIANIIEHMTYEVYKYAARGLYEEHKFLFTLLL 3899

Query: 903  TNKVLTSAGKVKATDLDVFLKGGAALDINSVRKKPKDWIPDSVWLNIIALSAMDAFRDIP 1082
            T K+     +VK  +    +KGGA+LD+ +   KP  WI D  WLN++ LS +  F D+ 
Sbjct: 3900 TLKIDIQRNRVKHEEFLTLIKGGASLDLKACPPKPSKWILDITWLNLVELSKLRQFSDVL 3959

Query: 1083 DSVFRN 1100
            D + RN
Sbjct: 3960 DQISRN 3965

>dbj|BAB13429.2| KIAA1603 protein [Homo sapiens]
          Length = 1659

 Score =  405 bits (1041), Expect = e-112
 Identities = 198/366 (54%), Positives = 273/366 (74%)
 Frame = +3

Query: 3    YPVLVDPQGQGREWIKNREEANQLKTTQLNDKLFRNHLEECLAFGRPLLIENIEEELDPL 182
            YP+L+DPQ QG+ WIKN+E  N+L+ T LN K FRNHLE+ L+ GRPLLIE++ EELDP 
Sbjct: 635  YPLLIDPQTQGKIWIKNKESRNELQITSLNHKYFRNHLEDSLSLGRPLLIEDVGEELDPA 694

Query: 183  LDPVLERRLVKKGKTWVVPLADKEVDFTETFRLFCTTRLPNPHFTPELSAKVTVVDFTVT 362
            LD VLER  +K G T+ V + DKEVD  + FRL+ TT+LPNP +TPE+SA+ +++DFTVT
Sbjct: 695  LDNVLERNFIKTGSTFKVKVGDKEVDVLDGFRLYITTKLPNPAYTPEISARTSIIDFTVT 754

Query: 363  MAGLEDQLLGKLISKEKKELEDQRQQLLEEVQSYKKRIKQLEDDLLFRLSNSQGNLLDDT 542
            M GLEDQLLG++I  EK+ELE +R  L+E+V + K+R+K+LED+LL+RL+++QG+L++D 
Sbjct: 755  MKGLEDQLLGRVILTEKQELEKERTHLMEDVTANKRRMKELEDNLLYRLTSTQGSLVEDE 814

Query: 543  ELIDVLAVTKQTAQDVSEKLANASETNKRINEACEEYRPVAHRATLLYFLIAEFSVVNCM 722
             LI VL+ TK+TA++V++KL  ++ET  +IN A EEYRPVA R ++LYFLI E  +VN M
Sbjct: 815  SLIVVLSNTKRTAEEVTQKLEISAETEVQINSAREEYRPVATRGSILYFLITEMRLVNEM 874

Query: 723  YQTSLAQFNQLYELAIDRSEKANMPSKRIHNIIEYMTYEIYLYVQRGLFERHKIIFALML 902
            YQTSL QF  L++L++ RS K+ + SKRI NIIE+MTYE+Y Y  RGL+E HK +F L+L
Sbjct: 875  YQTSLRQFLGLFDLSLARSVKSPITSKRIANIIEHMTYEVYKYAARGLYEEHKFLFTLLL 934

Query: 903  TNKVLTSAGKVKATDLDVFLKGGAALDINSVRKKPKDWIPDSVWLNIIALSAMDAFRDIP 1082
            T K+     +VK  +    +KGGA+LD+ +   KP  WI D  WLN++ LS +  F D+ 
Sbjct: 935  TLKIDIQRNRVKHEEFLTLIKGGASLDLKACPPKPSKWILDITWLNLVELSKLRQFSDVL 994

Query: 1083 DSVFRN 1100
            D + RN
Sbjct: 995  DQISRN 1000

>gb|AAK60624.1|AF356523_1 axonemal dynein heavy chain 8 short form 1 [Mus musculus]
            gi|14335468|gb|AAK60632.1|AF363577_1 axonemal dynein
            heavy chain 8 short form 2 [Mus musculus]
          Length = 4202

 Score =  403 bits (1035), Expect = e-111
 Identities = 198/366 (54%), Positives = 270/366 (73%)
 Frame = +3

Query: 3    YPVLVDPQGQGREWIKNREEANQLKTTQLNDKLFRNHLEECLAFGRPLLIENIEEELDPL 182
            YP+L+DPQ QG+ WIK++E+ N L+ T LN K FR HLE+ L+ GRPLLIE+I EELDP 
Sbjct: 3706 YPLLIDPQTQGKTWIKSKEKENDLQVTSLNHKYFRTHLEDSLSLGRPLLIEDIREELDPA 3765

Query: 183  LDPVLERRLVKKGKTWVVPLADKEVDFTETFRLFCTTRLPNPHFTPELSAKVTVVDFTVT 362
            LD VLE+  +K G  + V + DKE D  +TF+L+ TT+LPNP FTPE++AK +V+DFTVT
Sbjct: 3766 LDNVLEKNFIKSGTAFKVKVGDKECDIMDTFKLYITTKLPNPAFTPEINAKTSVIDFTVT 3825

Query: 363  MAGLEDQLLGKLISKEKKELEDQRQQLLEEVQSYKKRIKQLEDDLLFRLSNSQGNLLDDT 542
            M GLE+QLL ++I  EK+ELE +R +LLE+V   K+++K+LED+LL++LS ++G+L+DD 
Sbjct: 3826 MKGLENQLLRRVILTEKQELESERVKLLEDVTFNKRKMKELEDNLLYKLSATKGSLVDDE 3885

Query: 543  ELIDVLAVTKQTAQDVSEKLANASETNKRINEACEEYRPVAHRATLLYFLIAEFSVVNCM 722
             LI VL VTKQTA +VSEKL  A+ET  +IN A EE+RP A R ++LYFLI E S+VN M
Sbjct: 3886 SLIGVLRVTKQTAAEVSEKLHVAAETEIKINTAQEEFRPAATRGSILYFLITEMSMVNIM 3945

Query: 723  YQTSLAQFNQLYELAIDRSEKANMPSKRIHNIIEYMTYEIYLYVQRGLFERHKIIFALML 902
            YQTSLAQF +L++ ++ RSEK+ +P KRI NIIEY+TYE++ Y  RGL+E HK +F L++
Sbjct: 3946 YQTSLAQFLKLFDQSMARSEKSPLPQKRITNIIEYLTYEVFTYSVRGLYENHKFLFVLLM 4005

Query: 903  TNKVLTSAGKVKATDLDVFLKGGAALDINSVRKKPKDWIPDSVWLNIIALSAMDAFRDIP 1082
            T K+    G VK  +    +KGGAALD+ +   KP  WI D  WLN++ LS +  F +I 
Sbjct: 4006 TLKIDLQRGTVKHKEFQALIKGGAALDLKACPPKPFRWILDMTWLNLVELSKLPQFAEIM 4065

Query: 1083 DSVFRN 1100
            + + RN
Sbjct: 4066 NQISRN 4071

>ref|NP_038839.1| dynein, axonemal, heavy chain 8; dynein, axon, heavy chain 8 [Mus
            musculus] gi|14335450|gb|AAK60623.1|AF356522_1 axonemal
            dynein heavy chain 8 long form [Mus musculus]
          Length = 4731

 Score =  403 bits (1035), Expect = e-111
 Identities = 198/366 (54%), Positives = 270/366 (73%)
 Frame = +3

Query: 3    YPVLVDPQGQGREWIKNREEANQLKTTQLNDKLFRNHLEECLAFGRPLLIENIEEELDPL 182
            YP+L+DPQ QG+ WIK++E+ N L+ T LN K FR HLE+ L+ GRPLLIE+I EELDP 
Sbjct: 3706 YPLLIDPQTQGKTWIKSKEKENDLQVTSLNHKYFRTHLEDSLSLGRPLLIEDIREELDPA 3765

Query: 183  LDPVLERRLVKKGKTWVVPLADKEVDFTETFRLFCTTRLPNPHFTPELSAKVTVVDFTVT 362
            LD VLE+  +K G  + V + DKE D  +TF+L+ TT+LPNP FTPE++AK +V+DFTVT
Sbjct: 3766 LDNVLEKNFIKSGTAFKVKVGDKECDIMDTFKLYITTKLPNPAFTPEINAKTSVIDFTVT 3825

Query: 363  MAGLEDQLLGKLISKEKKELEDQRQQLLEEVQSYKKRIKQLEDDLLFRLSNSQGNLLDDT 542
            M GLE+QLL ++I  EK+ELE +R +LLE+V   K+++K+LED+LL++LS ++G+L+DD 
Sbjct: 3826 MKGLENQLLRRVILTEKQELESERVKLLEDVTFNKRKMKELEDNLLYKLSATKGSLVDDE 3885

Query: 543  ELIDVLAVTKQTAQDVSEKLANASETNKRINEACEEYRPVAHRATLLYFLIAEFSVVNCM 722
             LI VL VTKQTA +VSEKL  A+ET  +IN A EE+RP A R ++LYFLI E S+VN M
Sbjct: 3886 SLIGVLRVTKQTAAEVSEKLHVAAETEIKINTAQEEFRPAATRGSILYFLITEMSMVNIM 3945

Query: 723  YQTSLAQFNQLYELAIDRSEKANMPSKRIHNIIEYMTYEIYLYVQRGLFERHKIIFALML 902
            YQTSLAQF +L++ ++ RSEK+ +P KRI NIIEY+TYE++ Y  RGL+E HK +F L++
Sbjct: 3946 YQTSLAQFLKLFDQSMARSEKSPLPQKRITNIIEYLTYEVFTYSVRGLYENHKFLFVLLM 4005

Query: 903  TNKVLTSAGKVKATDLDVFLKGGAALDINSVRKKPKDWIPDSVWLNIIALSAMDAFRDIP 1082
            T K+    G VK  +    +KGGAALD+ +   KP  WI D  WLN++ LS +  F +I 
Sbjct: 4006 TLKIDLQRGTVKHKEFQALIKGGAALDLKACPPKPFRWILDMTWLNLVELSKLPQFAEIM 4065

Query: 1083 DSVFRN 1100
            + + RN
Sbjct: 4066 NQISRN 4071



EST assemble image


clone accession position
1 MXL009h07_r BP093544 1 413
2 MXL048b09_r BP095840 178 692
3 HCL081c07_r AV644072 456 1037
4 CL05b02_r AV393555 608 1101




Chlamydomonas reinhardtii
Kazusa DNA Research Institute