KCC000103A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000103A_C01 KCC000103A_c01
cggtcacgTTAGAAGGCTGGCCAGGGCCGGCAGCCGAGTCTTGAACACATCATCAACTCA
GACGTGCTCTGCTTGTCGCGAGCAGCTCCTGAAGAATGATGAGCCTTCGGGCTGCATCCC
GCAAGCAGGAGCTTCCGTCGCTCCTGCTGGCCCAGGCGCGCACATATGTGACCGCCCTGA
AGGTGGAGTTCAGCGAGGGCGTGGCTGCTCCTAAGAACAAGGAGAGTACTGCCCTCCTGG
ACGAGTGGAAGTCAAAGAAGGAGGCCACGGAGGGCCTGCTGAAGCTGCTGCAGTCCTACA
AGGACCTGGGCGACAGCAAGGGCGAGCCTCTGCTGAAGTTCCACAACCCGCGCTCGTTCG
AGGACCTGACCGCGCCGGTGCCGAACTTCCGGGCTCAGAACCTGAAGCCCGGCGAGGTCG
GCAAGTTCTTTGACACTGTGCTGGCCAAGCGTGCTGGAGAGGCGCAGGAGTCGAAGGGCA
AGTGGTGGGCTGAGCGCAAGTCTGAGGCGGAGGCTGCTGCTGCCAGCAAGGGCGCTGCGC
CCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000103A_C01 KCC000103A_c01
         (543 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD29654.1| ATP syntase-associated protein P60 [Chlamydomona...   291  3e-78
emb|CAD90158.1| ATPase associated protein P70 [Polytomella sp. P...    78  7e-14
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    53  3e-06
gb|AAP74957.1| keratinocytes proline-rich protein [Rattus norveg...    53  3e-06
gb|AAC82365.1| unknown [Myxococcus xanthus]                            52  4e-06

>emb|CAD29654.1| ATP syntase-associated protein P60 [Chlamydomonas reinhardtii]
          Length = 576

 Score =  291 bits (746), Expect = 3e-78
 Identities = 148/149 (99%), Positives = 148/149 (99%)
 Frame = +3

Query: 96  MMSLRAASRKQELPSLLLAQARTYVTALKVEFSEGVAAPKNKESTALLDEWKSKKEATEG 275
           MMSLRAASRKQELPSLLLAQARTYVTALKVEFSEGVAAPKNKESTALLDEWKSKKEATEG
Sbjct: 1   MMSLRAASRKQELPSLLLAQARTYVTALKVEFSEGVAAPKNKESTALLDEWKSKKEATEG 60

Query: 276 LLKLLQSYKDLGDSKGEPLLKFHNPRSFEDLTAPVPNFRAQNLKPGEVGKFFDTVLAKRA 455
           LLKLLQSYKDLGDSKGEPLLKFHNPRSFEDLTAPVPNFRAQNLKPGEVGKFFDTVLAKRA
Sbjct: 61  LLKLLQSYKDLGDSKGEPLLKFHNPRSFEDLTAPVPNFRAQNLKPGEVGKFFDTVLAKRA 120

Query: 456 GEAQESKGKWWAERKSEAEAAAASKGAAP 542
           GEAQESKGKWWAERKSEAEAAAASK AAP
Sbjct: 121 GEAQESKGKWWAERKSEAEAAAASKAAAP 149

>emb|CAD90158.1| ATPase associated protein P70 [Polytomella sp. Pringsheim 198.80]
          Length = 534

 Score = 78.2 bits (191), Expect = 7e-14
 Identities = 39/63 (61%), Positives = 47/63 (73%)
 Frame = +3

Query: 351 RSFEDLTAPVPNFRAQNLKPGEVGKFFDTVLAKRAGEAQESKGKWWAERKSEAEAAAASK 530
           R+FED   PVP+FR QNLK G+V KFFDTV++ RA  A  SK K+WA RK+EAEAA+A  
Sbjct: 1   RTFEDRDYPVPDFRTQNLKAGDVPKFFDTVISTRASAAIASKDKFWAGRKTEAEAASAKA 60

Query: 531 GAA 539
            AA
Sbjct: 61  SAA 63

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 42/150 (28%), Positives = 56/150 (37%), Gaps = 9/150 (6%)
 Frame = -1

Query: 540 AQRPCWQQQPPPQTCAQPTTCPSTPAPLQHA--WPAQCQRTCRPRRASGSEPGSSAPARS 367
           A RP     PPP    +  + P   AP QHA   P       RP     + P ++AP  +
Sbjct: 103 AARPAPPPPPPPPAAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQHA 162

Query: 366 GP-------RTSAGCGTSAEARPCCRPGPCRTAAASAGPPWPPSLTSTRPGGQYSPCS*E 208
            P       R +        A P  RP P  TA  +   P PP+  + RPG   +P +  
Sbjct: 163 PPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPVAP-PPAAPTARPGSP-APAATP 220

Query: 207 QPRPR*TPPSGRSHMCAPGPAGATEAPACG 118
            P P   P +  +    P P     AP  G
Sbjct: 221 APTPTPAPTATPAPTATPAPGSTPGAPPAG 250

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 50/166 (30%), Positives = 56/166 (33%), Gaps = 19/166 (11%)
 Frame = -1

Query: 540 AQRPCWQQQPPPQTCAQPTTCPSTPAPLQHAWPAQCQRTCRPR------RASGSEPGSSA 379
           A  P     PPP   A+PT  P  P P   A       T  P        A  + PGS A
Sbjct: 156 AAAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPVAPPPAAPTARPGSPA 215

Query: 378 PARSGPRTSAGCGTSAEARPCCRPGPCRTAAASA----GPPWPPSLTSTRPGGQYSPCS* 211
           PA +   T     T+  A P   P P  T  A      G P P     + P     P   
Sbjct: 216 PAATPAPTPTPAPTATPA-PTATPAPGSTPGAPPAGRPGAPPPGVRPGSPPAAGSPPAPG 274

Query: 210 EQPRPR*--------TPPSGR-SHMCAPGPAGATEAPACGMQPEGS 100
             P P          TPPSGR      P P  AT AP     P G+
Sbjct: 275 ATPAPTTTPAPGGTATPPSGRPGPASTPAPGAATPAPTATPAPGGA 320

 Score = 40.4 bits (93), Expect = 0.015
 Identities = 28/109 (25%), Positives = 42/109 (37%)
 Frame = -1

Query: 474 STPAPLQHAWPAQCQRTCRPRRASGSEPGSSAPARSGPRTSAGCGTSAEARPCCRPGPCR 295
           ++P  +  A P +     +P++     PG++ PA    R +A    +A   P   P P  
Sbjct: 29  ASPLVVAQAQPQETGPDGKPKQPPKGPPGAAPPAAPA-RPAAPPPAAAPPHPPAAPPPAA 87

Query: 294 TAAASAGPPWPPSLTSTRPGGQYSPCS*EQPRPR*TPPSGRSHMCAPGP 148
                A PP PP   + RP     P     P+    PP+      AP P
Sbjct: 88  APPRPAAPPPPPPPPAARPAPPPPPPPPAAPKQPSPPPAAAPQQHAPTP 136

 Score = 38.9 bits (89), Expect = 0.045
 Identities = 42/152 (27%), Positives = 51/152 (32%), Gaps = 11/152 (7%)
 Frame = -1

Query: 531 PCWQQQPPPQTCAQPTTCPSTPAPLQHAWPAQCQRTCRPRRASGSEPGSSAPARSGPRTS 352
           P     P P     PTT   TPAP   A P     + RP  AS   PG++ PA +     
Sbjct: 265 PAAGSPPAPGATPAPTT---TPAPGGTATPP----SGRPGPASTPAPGAATPAPTATPAP 317

Query: 351 AGCGTSAEARPCCRP------GPCRTAAASAGPPWPPSLTSTRPGGQYSPCS*EQP---- 202
            G  T    RP   P      G     A +AG P  P      P    +P     P    
Sbjct: 318 GGALTPPPGRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLPARPAAPAGAAAPSTVP 377

Query: 201 -RPR*TPPSGRSHMCAPGPAGATEAPACGMQP 109
                TPP  R+    P    A +A    + P
Sbjct: 378 GSAAATPPPNRAQFAPPTVTPAFQAAPTVVAP 409

>gb|AAP74957.1| keratinocytes proline-rich protein [Rattus norvegicus]
          Length = 699

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 54/167 (32%), Positives = 60/167 (35%), Gaps = 30/167 (17%)
 Frame = -1

Query: 531 PCWQQQPPPQTC---AQPTTCPSTPAPLQHAWPAQC------------QRTCRPRRASGS 397
           PC  +Q PPQ C     P    S   P Q +W   C             R CRP+R   S
Sbjct: 374 PCCPRQVPPQRCPVQIPPIRGRSRSCPRQPSWGVSCPDLRPCAEPHAFPRPCRPQRLDRS 433

Query: 396 EPGS----SAPA-RSGPRTSAGCGTSAEARPCCRPGPCRTAAASAGP-----PWPPSLTS 247
              S      PA R  PR    C  S E RPC RP P      S  P     P P     
Sbjct: 434 PESSWRRCPVPAPRPYPRPEP-C-PSPEPRPCPRPRPRPEPCPSPEPRPRPRPDPCPSPE 491

Query: 246 TRPGGQYSPCS*EQPRPR*TP-----PSGRSHMCAPGPAGATEAPAC 121
            RP  +  PC   +PRPR  P     P  R   C P P  + E   C
Sbjct: 492 LRPRPRPEPCPSPEPRPRPRPDPCPSPEPRPRPC-PEPCPSPEPRPC 537

 Score = 42.0 bits (97), Expect = 0.005
 Identities = 45/163 (27%), Positives = 54/163 (32%), Gaps = 24/163 (14%)
 Frame = -1

Query: 534 RPCWQQQPPPQTCAQPTTCP---STPAPLQHAWPAQCQRTCRPRRASGSEPGSSAPARSG 364
           RPC + +P P+ C  P   P     P P     P       RPR     EP  S   R  
Sbjct: 461 RPCPRPRPRPEPCPSPEPRPRPRPDPCPSPELRP-------RPR----PEPCPSPEPRPR 509

Query: 363 PRTSAGCGTSAEARPCCRPGPCRTAAASAGPP---------WPPSLTSTRPGGQYSPCS* 211
           PR           RPC  P PC +      PP         +P   + ++P     PC  
Sbjct: 510 PRPDPCPSPEPRPRPC--PEPCPSPEPRPCPPLRRFSEPCLYPEPCSVSKPVPCPVPCPA 567

Query: 210 EQPRP-------R*TPPSGRSHMC-----APGPAGATEAPACG 118
             PRP       R   PS RS  C      P P   +    CG
Sbjct: 568 PHPRPVHCETPGRRPQPSPRSQPCPHPEPMPRPVPCSSPVPCG 610

 Score = 34.3 bits (77), Expect = 1.1
 Identities = 43/156 (27%), Positives = 58/156 (36%), Gaps = 3/156 (1%)
 Frame = -1

Query: 531 PCWQQQPPPQTCAQPTTCPSTPAPLQHAWPAQCQRTCRPRR-ASGSEPGSSAPARSGPRT 355
           P  + QP  ++C+ P          +H+ P  C  +C P R +SGS    + P RS P  
Sbjct: 299 PSRRLQPSYRSCSPP----------RHSEP--CYSSCLPSRCSSGSYNYCTPPRRSEPIY 346

Query: 354 SAGCGTSAEARPCC-RPGP-CRTAAASAGPPWPPSLTSTRPGGQYSPCS*EQPRPR*TPP 181
            + C        C  R GP CR   +S  P  P  +   R       C  + P     P 
Sbjct: 347 GSHCSPRGRPSGCSQRCGPKCRIEISS--PCCPRQVPPQR-------CPVQIP-----PI 392

Query: 180 SGRSHMCAPGPAGATEAPACGMQPEGSSFFRSCSRQ 73
            GRS  C   P+     P      E  +F R C  Q
Sbjct: 393 RGRSRSCPRQPSWGVSCPDLRPCAEPHAFPRPCRPQ 428

>gb|AAC82365.1| unknown [Myxococcus xanthus]
          Length = 542

 Score = 52.4 bits (124), Expect = 4e-06
 Identities = 53/169 (31%), Positives = 63/169 (36%), Gaps = 33/169 (19%)
 Frame = -1

Query: 534 RPCWQQQPPPQTCAQPTT-CPSTPAPLQHAWPAQCQRTCRPRRASGSEPG---------- 388
           R C     PP+  A+P+   PS       A P+ C   C P    GS PG          
Sbjct: 117 RCCTPCPAPPRCRARPSAPAPSAGRTCPTAGPSSCASGCCPTGRCGSAPGPTPHGAEPSP 176

Query: 387 -----SSAPARSG--------PRTSAGCGTSAEA-----RPCCRPGP--CRTA--AASAG 274
                S APA SG        P  ++  G +A A     R C RPG    RTA  + SA 
Sbjct: 177 PSQSPSPAPASSGGRRRTHPRPARASAAGATAPACLPPPRCCGRPGTGCARTAPPSTSAS 236

Query: 273 PPWPPSLTSTRPGGQYSPCS*EQPRPR*TPPSGRSHMCAPGPAGATEAP 127
            P PP    T P    SP +          P+  S  C P P G T AP
Sbjct: 237 HPPPPRSPGTPPRASGSPAA---------APAPPSPACRPPPPGTTPAP 276

 Score = 40.0 bits (92), Expect = 0.020
 Identities = 48/146 (32%), Positives = 51/146 (34%), Gaps = 15/146 (10%)
 Frame = -1

Query: 468 PAPLQHAW--PAQCQRTCRPRRASGS-------------EPGSSAPARSGPRTSAGCGTS 334
           PAP +HA   PA   R C P R S                   SAPA S  RT    G S
Sbjct: 90  PAPSRHARRNPAGPSRRCGPPRKSTPTRCCTPCPAPPRCRARPSAPAPSAGRTCPTAGPS 149

Query: 333 AEARPCCRPGPCRTAAASAGPPWPPSLTSTRPGGQYSPCS*EQPRPR*TPPSGRSHMCAP 154
           + A  CC  G C     SA  P P     + P    SP        R T P         
Sbjct: 150 SCASGCCPTGRC----GSAPGPTPHGAEPSPPSQSPSPAPASSGGRRRTHP----RPARA 201

Query: 153 GPAGATEAPACGMQPEGSSFFRSCSR 76
             AGAT APAC   P      R C R
Sbjct: 202 SAAGAT-APACLPPP------RCCGR 220

 Score = 35.0 bits (79), Expect = 0.64
 Identities = 24/93 (25%), Positives = 35/93 (36%), Gaps = 2/93 (2%)
 Frame = -1

Query: 513 PPPQTCAQPTTCPSTPAPLQHAWPAQCQRTCRPRRASGSEPGSSAPARSGPRTSAGCGTS 334
           PPP+ C +P T               C RT  P  ++   P   +P      + +     
Sbjct: 213 PPPRCCGRPGT--------------GCARTAPPSTSASHPPPPRSPGTPPRASGSPAAAP 258

Query: 333 AEARPCCRPGPCRTAAA--SAGPPWPPSLTSTR 241
           A   P CRP P  T  A  +A  P  P ++ +R
Sbjct: 259 APPSPACRPPPPGTTPAPRNAALPALPCISPSR 291



EST assemble image


clone accession position
1 MXL091e04_r BP098322 1 489
2 MX251b02_r BP092210 9 485
3 CM058h06_r AV390385 10 585
4 HCL080f10_r AV644036 10 511
5 CL05a12_r AV393573 29 512




Chlamydomonas reinhardtii
Kazusa DNA Research Institute