Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000099A_C01 KCC000099A_c01
(560 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_742363.1| alginate regulatory protein AlgP [Pseudomonas p... 48 8e-05
dbj|BAA96489.1| chemotactic transducer CtpL [Pseudomonas aerugin... 47 2e-04
ref|XP_293372.2| similar to Ser/Arg-related nuclear matrix prote... 46 4e-04
emb|CAC36180.1| 65 kDa heat shock protein [Mycobacterium terrae] 44 0.001
gb|AAK30591.1|AF350262_1 major ampullate spidroin 1 [Argiope aur... 44 0.001
>ref|NP_742363.1| alginate regulatory protein AlgP [Pseudomonas putida KT2440]
gi|24981549|gb|AAN65827.1|AE016211_5 alginate regulatory
protein AlgP [Pseudomonas putida KT2440]
Length = 329
Score = 48.1 bits (113), Expect = 8e-05
Identities = 40/119 (33%), Positives = 61/119 (50%)
Frame = +2
Query: 194 RTTAAAKTSSPPAARPTTAAPRPRLWRPRGWAASKAWACLPPPSPSWRSRRPALCSSRAM 373
R TAAAK ++ PAA+ TTAA +P A+KA A P + +PA ++ A
Sbjct: 154 RATAAAKPAAKPAAKTTTAA------KPAAKPAAKATAAAKP------AAKPAAKATAAA 201
Query: 374 RPWRR*TTPTRETP*PSSRPASPSRCEACEPAAK*GGARPGALAKAPCQSAARSARA*K 550
+P + P+++PA+ + A +PAAK A+ A AK + AA++A A K
Sbjct: 202 KPAAKPAAKATAAAKPAAKPAAKATA-AAKPAAK-PAAKATAAAKPAAKPAAKAAAAAK 258
Score = 32.0 bits (71), Expect = 5.9
Identities = 31/115 (26%), Positives = 47/115 (39%), Gaps = 1/115 (0%)
Frame = +2
Query: 194 RTTAAAKTSSPPAARPTTAAPRPRLWRPRGWAASKAWACLPPPSPSWRSRRPALCSSRAM 373
+ TAAAK ++ PAA+ AA +P A+KA A P P+ + A
Sbjct: 238 KATAAAKPAAKPAAKAAAAA------KPAAKPAAKAPAAKPAAKPAATKAPARTAAKPAA 291
Query: 374 RPWRR*TTPTRETP*PSSRPASP-SRCEACEPAAK*GGARPGALAKAPCQSAARS 535
+P ++PA+P + + PAA A P A P Q+ + S
Sbjct: 292 KP-------------AEAKPATPAATTNSVSPAA----AAPSAPVSTPSQAPSAS 329
>dbj|BAA96489.1| chemotactic transducer CtpL [Pseudomonas aeruginosa]
Length = 632
Score = 46.6 bits (109), Expect = 2e-04
Identities = 40/115 (34%), Positives = 47/115 (40%)
Frame = +3
Query: 207 PPKHLPHQQQGLLQQPHVLGCGVLGAGRPARPGRACRRLRHRGARDGRRCAQAGR*DPGA 386
P H+ +P G +G G A+PGRACR R G R GRR ++GR DP
Sbjct: 533 PAHRRRHRGDPAAHRPPATGRAAIGGGH-AQPGRACRTHRRTGRRGGRRAGRSGRRDP-- 589
Query: 387 GEQRLPGRLPDRHLVPHRRVAVKRVSQRQNEVAPGQVLSRRHLASPQHARRGRRK 551
R GR HRR R + PG R LA H R GR K
Sbjct: 590 -YHRRDGR-------THRR--------RLDPAEPGG--RRDSLAQRTHPRPGRGK 626
>ref|XP_293372.2| similar to Ser/Arg-related nuclear matrix protein (plenty of
prolines 101-l; Ser/Arg-related nuclear matrix protein
(plenty of prolines 101-like) [Homo sapiens]
Length = 429
Score = 45.8 bits (107), Expect = 4e-04
Identities = 33/98 (33%), Positives = 45/98 (45%)
Frame = -2
Query: 427 R*RSGSLPGRRCSPAPGSHRPA*AQRRPSRAPRWRRRRQARPGLAGRPAPRTPQPRTWGC 248
R R+ S P RCSP+P + P QRR S +P +RR + P L + A +P P+ W
Sbjct: 327 RKRTPSPPSHRCSPSPRRYSPP-IQRRYSPSPPPKRRMASSPPLPEQRALPSPPPKHWVS 385
Query: 247 CSRPCCWWGRCFGGRCCPSQSLPAHRASCPKRGRYGSR 134
S P R PS S + S P R + +R
Sbjct: 386 HSPPPKQRSSSVTKRRSPSLSSKHRKGSSPSRSTHEAR 423
>emb|CAC36180.1| 65 kDa heat shock protein [Mycobacterium terrae]
Length = 146
Score = 43.9 bits (102), Expect = 0.001
Identities = 38/96 (39%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +2
Query: 191 RRTTAAAKTSSP--PAARPTTAAPRPRLWRPRGWAASKAWACLPPPSPSWRSRRPALCSS 364
RR+ + SP P P TA PRP W R W + KA A PP W P +S
Sbjct: 18 RRSAPSWSKRSPRRPTMSPVTAPPRPPCWH-RRW-SRKACATWPPAPTRW----PXSAAS 71
Query: 365 RAMRPWRR*TTPTRETP*PSSRPASPSRCEACEPAA 472
R RP RR P TP SRP S SR P A
Sbjct: 72 R--RPSRRSPRPCXRTP-RRSRPRSRSRLPPGSPRA 104
>gb|AAK30591.1|AF350262_1 major ampullate spidroin 1 [Argiope aurantia]
Length = 447
Score = 43.9 bits (102), Expect = 0.001
Identities = 35/98 (35%), Positives = 39/98 (39%)
Frame = -3
Query: 513 GAFARAPGRAPPHFAAGSHASQRLGDAGRDDGQGVSLVGVVHLRQGLIALLEHNAGRRER 334
GA G A AAG LG G G G L G QG A AG +
Sbjct: 193 GAGQGGAGAAAAAAAAGGAGEGGLGAGGAGQGYGSGLGGQGGAGQGGAAAAAAAAGGQGG 252
Query: 333 HDGEGGGKHAQALLAAQPRGRHSRGRGAAVVGLAAGGE 220
H G GG L +Q G+ GRGAA AAGG+
Sbjct: 253 HGGYGG-------LGSQGAGQGGAGRGAAAAAAAAGGQ 283
Score = 37.0 bits (84), Expect = 0.18
Identities = 32/95 (33%), Positives = 36/95 (37%)
Frame = -3
Query: 504 ARAPGRAPPHFAAGSHASQRLGDAGRDDGQGVSLVGVVHLRQGLIALLEHNAGRRERHDG 325
A A A AG LG G G G L G QG A AG + G
Sbjct: 86 AGAAAAAAAAGGAGGAGRGGLGAGGAGQGYGSGLGGQGGAGQGGAAAAAAAAGGQGGQGG 145
Query: 324 EGGGKHAQALLAAQPRGRHSRGRGAAVVGLAAGGE 220
GG L +Q G+ GRGAA AAGG+
Sbjct: 146 YGG-------LGSQGAGQGGAGRGAAAAAAAAGGQ 173
