Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000074A_C01 KCC000074A_c01
(504 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175132.1| zinc finger (C3HC4-type RING finger) protein fa... 38 0.062
ref|NP_391260.1| glycine betaine/carnitine/choline ABC transport... 37 0.11
ref|NP_785202.1| glycine betaine/carnitine/choline ABC transport... 35 0.53
ref|NP_391250.1| choline ABC transporter (membrane protein) [Bac... 34 1.2
pir||B42832 factor VIII intron 22 protein - human 33 1.5
>ref|NP_175132.1| zinc finger (C3HC4-type RING finger) protein family [Arabidopsis
thaliana] gi|7767667|gb|AAF69164.1|AC007915_16 F27F5.26
[Arabidopsis thaliana]
Length = 645
Score = 38.1 bits (87), Expect = 0.062
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Frame = -3
Query: 418 APSARLP*RGAGPASR--------PVAAPP*S*AAAEAMRRVS*KQAQTVR*AASRNRYR 263
AP+ +P P SR PVAA S +A R V + A R R
Sbjct: 306 APATHMP-----PVSRNTFQWNTSPVAAVISSSSATPVDRNVIHRNA---------TRQR 351
Query: 262 LSPLKLPHCCPFPELYRATRRH-SQKKSGSRPVAVPEKQPSIPQPAPGGAISCPRAALSP 86
+ L++P P PEL H S+ SG+R VA + S+ QP+P AL+P
Sbjct: 352 SNTLEIPLFVPAPELRNVAHGHISRNASGARHVASSSSRTSV-QPSPSS------PALTP 404
Query: 85 WS*AGLAQQRKLS--FKTTLYHSI 20
+ L QR+LS F+ +L S+
Sbjct: 405 YQNNSLHNQRRLSENFRRSLLSSL 428
>ref|NP_391260.1| glycine betaine/carnitine/choline ABC transporter (membrane
protein) [Bacillus subtilis]
gi|7387986|sp|O34742|OPCD_BACSU Glycine
betaine/carnitine/choline transport system permease
protein opuCD gi|7445436|pir||F69670 glycine
betaine/carnitine/choline ABC transporter (membrane p)
opuCD - Bacillus subtilis gi|2271392|gb|AAB63771.1|
transmembrane protein [Bacillus subtilis]
gi|2635893|emb|CAB15385.1| glycine
betaine/carnitine/choline ABC transporter (membrane
protein) [Bacillus subtilis subsp. subtilis str. 168]
Length = 229
Score = 37.4 bits (85), Expect = 0.11
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 121 PLALVVVCLAVSQARLLVVSQTSFGN--GAGSLYTIQETGSSEAASEATADTGSGSLPSA 294
PLAL V+ + A ++ + T+ G GAG L I GS+ A+ TA +G++P+A
Sbjct: 135 PLALSVIMAGLRTALVIAIGITAIGTFVGAGGLGDIIVRGSN--ATNGTAIILAGAIPTA 192
Query: 295 LFGPVFSSPFAWLQQQL 345
L + WL++ L
Sbjct: 193 LMAVIADLVMGWLERAL 209
>ref|NP_785202.1| glycine betaine/carnitine/choline ABC transporter, ATP-binding
protein [Lactobacillus plantarum WCFS1]
gi|28271145|emb|CAD64050.1| glycine
betaine/carnitine/choline ABC transporter, ATP-binding
protein [Lactobacillus plantarum WCFS1]
Length = 217
Score = 35.0 bits (79), Expect = 0.53
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = +1
Query: 49 TAFVVARGQPKTKATMQLGGSLLRPLALVVVCLAVSQARLLVVSQTSFGN--GAGSLYTI 222
+A ++ G+ QL + PL+L V+ + A +L + T+ G GAG L I
Sbjct: 114 SASILDSGKGMGMTRWQLLRMVELPLSLSVIMAGLRNALVLAIGITAIGTFVGAGGLGDI 173
Query: 223 QETGSSEAASEATADTGSGSLPSALFGPVFSSPFAWLQQQ 342
G++ A+ A +G+LP+AL + + AW++++
Sbjct: 174 IIRGTN--ATNGGAIILAGALPTALMAIIADTVLAWIEKR 211
>ref|NP_391250.1| choline ABC transporter (membrane protein) [Bacillus subtilis]
gi|7404421|sp|P39775|OPBD_BACSU Choline transport system
permease protein opuBD gi|7445437|pir||B69670 choline
ABC transporter (membrane protein) opuBD - Bacillus
subtilis gi|2293450|gb|AAC14359.1| transmembrane protein
[Bacillus subtilis] gi|2635883|emb|CAB15375.1| choline
ABC transporter (membrane protein) [Bacillus subtilis
subsp. subtilis str. 168]
Length = 226
Score = 33.9 bits (76), Expect = 1.2
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 121 PLALVVVCLAVSQARLLVVSQTSFGN--GAGSLYTIQETGSSEAASEATADTGSGSLPSA 294
PLAL V+ + A ++ + T+ G GAG L + GS+ A+ TA +G++P+A
Sbjct: 135 PLALSVIMAGLRTALVIAIGITAIGTFVGAGGLGDMIVRGSN--ATNGTAIILAGAIPTA 192
Query: 295 LFGPVFSSPFAWLQQQL 345
+ AWL++ L
Sbjct: 193 VMAVGADLLMAWLERAL 209
>pir||B42832 factor VIII intron 22 protein - human
Length = 365
Score = 33.5 bits (75), Expect = 1.5
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 229 FPELYRATRRHSQKKSGSRPV-AVPEKQPSIPQPAPGGAISCPRAALSP 86
F + R R H GS PV ++P P PQP PG + P A L P
Sbjct: 203 FTRMQRLAREH-----GSHPVQSLPPPPPPAPQPGPGATPALPAALLPP 246
