Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000062A_C04 KCC000062A_c04
(892 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha... 234 1e-60
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha... 228 1e-58
gb|AAO46873.1| ribulose-bisphosphate carboxylase small subunit V... 222 7e-57
gb|AAO46871.1| ribulose-bisphosphate carboxylase small subunit V... 221 2e-56
gb|AAO46872.1| ribulose-bisphosphate carboxylase small subunit V... 217 2e-55
>sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small chain 2, chloroplast
precursor (RuBisCO small subunit 2) gi|68110|pir||RKKMS2
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain 2 precursor - Chlamydomonas reinhardtii
gi|295799|emb|CAA28160.1| ribulose bisphosphate
carboxylase [Chlamydomonas reinhardtii]
Length = 185
Score = 234 bits (597), Expect = 1e-60
Identities = 134/191 (70%), Positives = 144/191 (75%), Gaps = 3/191 (1%)
Frame = +1
Query: 19 MAAVIANVLRLRGLWPARPAPACC-PMAALKPAVKAAPGGC-ARLRPTR*WSGPRSTTRC 192
MAAVIA + ARPA + PMAALKPAVKAAP A+ W+ + +
Sbjct: 1 MAAVIAKSSVSAAV--ARPARSSVRPMAALKPAVKAAPVAAPAQANQMMVWTPVNN--KM 56
Query: 193 SETFSYLPPLERRADRRPGRLHCRQRPG-SPACEFAESDKAYVSNESAIRFGSVSCLYYD 369
ETFSYLPPL ++ ++ G P EFAESDKAYVSNESAIRFGSVSCLYYD
Sbjct: 57 FETFSYLPPLSD--EQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYD 114
Query: 370 NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSA 549
NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSA
Sbjct: 115 NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSA 174
Query: 550 RDWQPANKRSV 582
RDWQPANKRSV
Sbjct: 175 RDWQPANKRSV 185
>sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small chain 1, chloroplast
precursor (RuBisCO small subunit 1) gi|68109|pir||RKKMS1
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain 1 precursor - Chlamydomonas reinhardtii
Length = 185
Score = 228 bits (580), Expect = 1e-58
Identities = 131/191 (68%), Positives = 144/191 (74%), Gaps = 3/191 (1%)
Frame = +1
Query: 19 MAAVIANVLRLRGLWPARPAPACC-PMAALKPAVKAAPGGC-ARLRPTR*WSGPRSTTRC 192
MAAVIA + ARPA + PMAALKPAVKAAP A+ W+ + +
Sbjct: 1 MAAVIAKSSVSAAV--ARPARSSVRPMAALKPAVKAAPVAAPAQANQMMVWTPVNN--KM 56
Query: 193 SETFSYLPPLERRADRRPGRLHCRQRPG-SPACEFAESDKAYVSNESAIRFGSVSCLYYD 369
ETFSYLPPL ++ ++ G P EFAE+DKAYVSNESAIRFGSVSCLYYD
Sbjct: 57 FETFSYLPPLTD--EQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYD 114
Query: 370 NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSA 549
NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPK+A
Sbjct: 115 NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTA 174
Query: 550 RDWQPANKRSV 582
RD+QPANKRSV
Sbjct: 175 RDFQPANKRSV 185
>gb|AAO46873.1| ribulose-bisphosphate carboxylase small subunit Vc3 [Volvox
carteri]
Length = 185
Score = 222 bits (565), Expect = 7e-57
Identities = 121/175 (69%), Positives = 133/175 (75%), Gaps = 3/175 (1%)
Frame = +1
Query: 67 ARPAPACC-PMAALKPAVKAAPGGC-ARLRPTR*WSGPRSTTRCSETFSYLPPLERRADR 240
ARPA + P+A LKPAVKAAP A+ W+ + + ETFSYLPPL ++
Sbjct: 15 ARPARSSVRPVAGLKPAVKAAPVAAPAQANKMMVWTPVNN--KMFETFSYLPPLTD--EQ 70
Query: 241 RPGRLHCRQRPG-SPACEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRD 417
++ G P EFAE+DKAYVSNES +RFG VSCLYYDNRYWTMWKLPMFGCRD
Sbjct: 71 IAAQVDYIVANGWIPCLEFAEADKAYVSNESTVRFGPVSCLYYDNRYWTMWKLPMFGCRD 130
Query: 418 PMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSARDWQPANKRSV 582
PMQVLREIVACTKAFPDAYVRLVAFDN KQVQIMGFLVQRPKSARDWQPANKRSV
Sbjct: 131 PMQVLREIVACTKAFPDAYVRLVAFDNVKQVQIMGFLVQRPKSARDWQPANKRSV 185
Score = 58.9 bits (141), Expect = 1e-07
Identities = 35/76 (46%), Positives = 42/76 (55%)
Frame = +3
Query: 60 VARPARSSVLPHGRAEARRQGRPRWLRPAQANQMMVWTPVNNKMF*DLLLPAPPGATSRS 239
VARPARSSV P + + P PAQAN+MMVWTPVNNKMF + PP +
Sbjct: 14 VARPARSSVRPVAGLKPAVKAAP-VAAPAQANKMMVWTPVNNKMF-ETFSYLPPLTDEQI 71
Query: 240 PPRSTTLSPTAWIPCL 287
+ + WIPCL
Sbjct: 72 AAQVDYIVANGWIPCL 87
>gb|AAO46871.1| ribulose-bisphosphate carboxylase small subunit Vc1 [Volvox
carteri]
Length = 185
Score = 221 bits (562), Expect = 2e-56
Identities = 123/191 (64%), Positives = 139/191 (72%), Gaps = 3/191 (1%)
Frame = +1
Query: 19 MAAVIANVLRLRGLWPARPAPACC-PMAALKPAVKAAP-GGCARLRPTR*WSGPRSTTRC 192
MAA++A + RPA + P+A LKPA+KAAP A+ W+ + +
Sbjct: 1 MAAIVAKSSVATAV--VRPARSSVRPVAVLKPAIKAAPVASPAQANKMMVWTPVNN--KM 56
Query: 193 SETFSYLPPLERRADRRPGRLHCRQRPG-SPACEFAESDKAYVSNESAIRFGSVSCLYYD 369
ETFSYLPPL ++ ++ G P EFAE+DKAYVSNES +RFG VSCLYYD
Sbjct: 57 FETFSYLPPLTD--EQIAAQVDYIVANGWIPCLEFAEADKAYVSNESTVRFGPVSCLYYD 114
Query: 370 NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSA 549
NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDN KQVQIMGFLVQRPKSA
Sbjct: 115 NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNVKQVQIMGFLVQRPKSA 174
Query: 550 RDWQPANKRSV 582
RDWQPANKRSV
Sbjct: 175 RDWQPANKRSV 185
>gb|AAO46872.1| ribulose-bisphosphate carboxylase small subunit Vc2 [Volvox
carteri]
Length = 185
Score = 217 bits (553), Expect = 2e-55
Identities = 123/191 (64%), Positives = 138/191 (71%), Gaps = 3/191 (1%)
Frame = +1
Query: 19 MAAVIANVLRLRGLWPARPAPACC-PMAALKPAVKAAPGGC-ARLRPTR*WSGPRSTTRC 192
MAAVIA + ARPA + P+A LKP+V+A P + W+ + +
Sbjct: 1 MAAVIAKSSVATAV--ARPARSGVRPVAVLKPSVRATPVATPTQANKMMVWTPVNN--KM 56
Query: 193 SETFSYLPPLERRADRRPGRLHCRQRPG-SPACEFAESDKAYVSNESAIRFGSVSCLYYD 369
ETFSYLPPL ++ ++ G P EFAE+DKAYVSNES +RFG VSCLYYD
Sbjct: 57 FETFSYLPPLSD--EQIAAQVDYIVANGWIPCLEFAEADKAYVSNESTVRFGPVSCLYYD 114
Query: 370 NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSA 549
NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDN KQVQIMGFLVQRPKSA
Sbjct: 115 NRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNVKQVQIMGFLVQRPKSA 174
Query: 550 RDWQPANKRSV 582
RDWQPANKRSV
Sbjct: 175 RDWQPANKRSV 185