KCC000060A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000060A_C01 KCC000060A_c01
AAGATGGGCGCCTACAAGTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTC
CGCTTCCTGCTGCGTGTGCGCTGCTGGGAGTACCGCCAGATGCCCAGCTGCGTGCGCCTG
ACTCGCCCGTCGCGCCCGGACAAGGCCCGCCGCCTGGGCTACAAGGCCAAGCAGGGCTAC
GTTGTCTACCGCGTGCGCGTCCGCCGCGGCAACCGCAAGCGGCCTGTGCACAAGGGCATT
GTCTACGGCAAGCCCGTGAACCAGGGTATCACCCAGCTGAAGCCCGCCCGCAACCTGCGC
AACGTCGCTGAGGAGCGTGCTGGCCGCAAGTGCGGTGGCCTGCGCGTCCTGAACTCCTAC
TGGGTGAACCAGGACTCGTGCTACAAGTACTTCGAGGTGATCATGGTGGACCCCGCCCAC
AACGCCATCCGCAACGATGCCCGCATCAACTGGCTGTGCAACCCCGTGCACAAGCACCGC
GAGCTGCGCGGTCTGACCGCCGCGGGCAAGAACTACCGCGGCCTGCGCGCCAAGGGCCAC
AAGGCCAGCAAGACCCGCCCCTCGAAGAGGGCCAGCTGGAAGCGCCGCAACAGCCTGTCG
CTGCGCCGCTTCCGCTAAACAGCATCTGCCTCATCATCAGCTGCTGTTGGCGCCGCCTGA
TTGCGAGATTACACCATCAACTCTTACGATCGTCATTCTATTCTCTGTAACGAGGAGGGC
TTCCAGCCCTACACGCCCTCTACAACCTCCACTCACCACTACACACATCACTTCCT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000060A_C01 KCC000060A_c01
(776 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O65050|R15A_PICMA 60S RIBOSOMAL PROTEIN L15-1 gi|2982249|gb|A... 350 1e-95
sp|O65082|R15B_PICMA 60S RIBOSOMAL PROTEIN L15-2 gi|2982318|gb|A... 350 2e-95
ref|NP_193405.1| 60S ribosomal protein L15 (RPL15A) [Arabidopsis... 348 4e-95
ref|NP_193470.1| 60S ribosomal protein L15 (RPL15B) [Arabidopsis... 348 7e-95
gb|AAN08216.1| ribosomal protein L15 [Oryza sativa (japonica cul... 347 2e-94
>sp|O65050|R15A_PICMA 60S RIBOSOMAL PROTEIN L15-1 gi|2982249|gb|AAC32112.1| probable 60S
ribosomal protein L15 [Picea mariana]
Length = 204
Score = 350 bits (899), Expect = 1e-95
Identities = 165/204 (80%), Positives = 183/204 (88%)
Frame = +1
Query: 4 MGAYKYIEELWRKKQSDVLRFLLRVRCWEYRQMPSCVRLTRPSRPDKARRLGYKAKQGYV 183
MGAYKYIEELW+KKQSDV+RFL RVRCWE+RQ+P VR+TRPSRPDKARRLGYKAKQGYV
Sbjct: 1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYV 60
Query: 184 VYRVRVRRGNRKRPVHKGIVYGKPVNQGITQLKPARNLRNVAEERAGRKCGGLRVLNSYW 363
VYRVRVRRG RKRPV KGIVYGKP NQGITQLK R+LR+VAEERAGRK GGLRVLNSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYW 120
Query: 364 VNQDSCYKYFEVIMVDPAHNAIRNDARINWLCNPVHKHRELRGLTAAGKNYRGLRAKGHK 543
+NQDS YKY+E+I+VD AH+AIR D RINW+CN VHKHRELRGLT+AGK YRGLR +GH
Sbjct: 121 INQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHL 180
Query: 544 ASKTRPSKRASWKRRNSLSLRRFR 615
K RPSKRA+WKR N+LSLRR+R
Sbjct: 181 YHKARPSKRATWKRNNTLSLRRYR 204
>sp|O65082|R15B_PICMA 60S RIBOSOMAL PROTEIN L15-2 gi|2982318|gb|AAC32144.1| probable 60S
ribosomal protein L15 [Picea mariana]
Length = 204
Score = 350 bits (897), Expect = 2e-95
Identities = 164/204 (80%), Positives = 181/204 (88%)
Frame = +1
Query: 4 MGAYKYIEELWRKKQSDVLRFLLRVRCWEYRQMPSCVRLTRPSRPDKARRLGYKAKQGYV 183
MGAYKYIEELW+KKQSDV+RFL RVRCWEYRQ+P VR+T P+RPDKARRLGYKAKQGYV
Sbjct: 1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYV 60
Query: 184 VYRVRVRRGNRKRPVHKGIVYGKPVNQGITQLKPARNLRNVAEERAGRKCGGLRVLNSYW 363
VYRVRVRRG RKRPV KGIVYGKP NQGITQLK R+LR+VAEERAGRK GGLRVLNSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYW 120
Query: 364 VNQDSCYKYFEVIMVDPAHNAIRNDARINWLCNPVHKHRELRGLTAAGKNYRGLRAKGHK 543
+NQDS YKY+EV++VD AH IRND RINW+CN VHKHRELRGLT+AGK YRGLR +GH
Sbjct: 121 INQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHL 180
Query: 544 ASKTRPSKRASWKRRNSLSLRRFR 615
K RPSKRA+WKR N+LSLRR+R
Sbjct: 181 YHKARPSKRATWKRNNTLSLRRYR 204
>ref|NP_193405.1| 60S ribosomal protein L15 (RPL15A) [Arabidopsis thaliana]
gi|3122673|sp|O23515|RL15_ARATH 60S ribosomal protein
L15 gi|7441105|pir||E71434 ribosomal protein
L15.DL4385C, cytosolic - Arabidopsis thaliana
gi|2245027|emb|CAB10447.1| ribosomal protein
[Arabidopsis thaliana] gi|7268422|emb|CAB78714.1|
ribosomal protein [Arabidopsis thaliana]
gi|13878179|gb|AAK44167.1|AF370352_1 putative ribosomal
protein [Arabidopsis thaliana]
gi|16604446|gb|AAL24229.1| AT4g16720/dl4385c
[Arabidopsis thaliana] gi|19715591|gb|AAL91619.1|
AT4g16720/dl4385c [Arabidopsis thaliana]
gi|21592436|gb|AAM64387.1| ribosomal protein
[Arabidopsis thaliana] gi|22136774|gb|AAM91731.1|
putative ribosomal protein [Arabidopsis thaliana]
gi|23505795|gb|AAN28757.1| At4g16720/dl4385c
[Arabidopsis thaliana]
Length = 204
Score = 348 bits (894), Expect = 4e-95
Identities = 161/204 (78%), Positives = 181/204 (87%)
Frame = +1
Query: 4 MGAYKYIEELWRKKQSDVLRFLLRVRCWEYRQMPSCVRLTRPSRPDKARRLGYKAKQGYV 183
MGAYKY+ ELWRKKQSDV+RFL RVRCWEYRQ PS VRL RP+RPDKARRLGYKAKQG+V
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60
Query: 184 VYRVRVRRGNRKRPVHKGIVYGKPVNQGITQLKPARNLRNVAEERAGRKCGGLRVLNSYW 363
VYRVRVRRG RKRPV KGIVYGKP NQG+TQLK R+ R+VAEERAGRK GGLRV+NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120
Query: 364 VNQDSCYKYFEVIMVDPAHNAIRNDARINWLCNPVHKHRELRGLTAAGKNYRGLRAKGHK 543
+N+DS YKY+E+I+VDPAHNA+RND RINW+CNPVHKHRELRGLT+ GK RGLR KGH
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180
Query: 544 ASKTRPSKRASWKRRNSLSLRRFR 615
K RPS+RA+WK+ NSLSLRR+R
Sbjct: 181 NHKNRPSRRATWKKNNSLSLRRYR 204
>ref|NP_193470.1| 60S ribosomal protein L15 (RPL15B) [Arabidopsis thaliana]
gi|18175858|gb|AAL59940.1| putative 60S ribosomal
protein L15-like protein [Arabidopsis thaliana]
gi|21592700|gb|AAM64649.1| 60S ribosomal protein L15
homolog [Arabidopsis thaliana]
gi|21689875|gb|AAM67498.1| putative 60S ribosomal
protein L15-like protein [Arabidopsis thaliana]
Length = 204
Score = 348 bits (892), Expect = 7e-95
Identities = 160/204 (78%), Positives = 181/204 (88%)
Frame = +1
Query: 4 MGAYKYIEELWRKKQSDVLRFLLRVRCWEYRQMPSCVRLTRPSRPDKARRLGYKAKQGYV 183
MGAYKY+ ELWRKKQSDV+RFL RVRCWEYRQ PS VRL RP+RPDKARRLGYKAKQG+V
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60
Query: 184 VYRVRVRRGNRKRPVHKGIVYGKPVNQGITQLKPARNLRNVAEERAGRKCGGLRVLNSYW 363
VYRVRVRRG RKRPV KGIVYGKP NQG+TQLK R+ R+VAEERAGRK GGLRV+NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120
Query: 364 VNQDSCYKYFEVIMVDPAHNAIRNDARINWLCNPVHKHRELRGLTAAGKNYRGLRAKGHK 543
+N+DS YKY+E+I+VDPAHNA+RND RINW+CNPVHKHRELRGLT+ GK RGLR KGH
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180
Query: 544 ASKTRPSKRASWKRRNSLSLRRFR 615
K RPS+RA+WK+ NS+SLRR+R
Sbjct: 181 NHKNRPSRRATWKKNNSISLRRYR 204
>gb|AAN08216.1| ribosomal protein L15 [Oryza sativa (japonica cultivar-group)]
gi|28875969|gb|AAO59978.1| ribosomal protein L15 [Oryza
sativa (japonica cultivar-group)]
Length = 204
Score = 347 bits (889), Expect = 2e-94
Identities = 163/204 (79%), Positives = 181/204 (87%)
Frame = +1
Query: 4 MGAYKYIEELWRKKQSDVLRFLLRVRCWEYRQMPSCVRLTRPSRPDKARRLGYKAKQGYV 183
MGAYKY+ ELWR+KQSDV+RF+ RVRCWEYRQ P+ VRLTRP+RPDKARRLGYKAKQGYV
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 184 VYRVRVRRGNRKRPVHKGIVYGKPVNQGITQLKPARNLRNVAEERAGRKCGGLRVLNSYW 363
VYRVRVRRG RKRPV KGIVYGKP +QGITQLK RN R+VAEERAGRK GGLRVLNSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 364 VNQDSCYKYFEVIMVDPAHNAIRNDARINWLCNPVHKHRELRGLTAAGKNYRGLRAKGHK 543
VN+DS YKYFE+I+VD AH+AIRND RINWLC PVHKHRELRGLT+AGK YRGLR KGH
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180
Query: 544 ASKTRPSKRASWKRRNSLSLRRFR 615
K RPS+RA+WKR ++SLRR+R
Sbjct: 181 HHKARPSRRATWKRNQTVSLRRYR 204
EST assemble image
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clone |
accession |
position |
| 1 |
LC029c02_r |
AV620958 |
1 |
604 |
| 2 |
HC070e07_r |
AV637238 |
16 |
556 |
| 3 |
HC085e07_r |
AV638371 |
37 |
506 |
| 4 |
CS001b10_r |
AV398022 |
97 |
645 |
| 5 |
HC049f09_r |
AV635697 |
104 |
603 |
| 6 |
MXL088g02_r |
BP098173 |
104 |
511 |
| 7 |
HCL065d03_r |
AV643194 |
105 |
628 |
| 8 |
MX037a08_r |
BP087544 |
105 |
604 |
| 9 |
CS001a03_r |
AV397952 |
106 |
511 |
| 10 |
MXL056a03_r |
BP096287 |
106 |
502 |
| 11 |
MXL008d09_r |
BP093439 |
106 |
499 |
| 12 |
CS001b11_r |
AV397992 |
107 |
661 |
| 13 |
MX037a05_r |
BP087543 |
107 |
540 |
| 14 |
MXL080h09_r |
BP097760 |
109 |
477 |
| 15 |
HCL040d08_r |
AV641796 |
111 |
616 |
| 16 |
MX057c09_r |
BP088319 |
113 |
456 |
| 17 |
MX050b04_r |
BP088046 |
113 |
443 |
| 18 |
MXL035h02_r |
BP095100 |
113 |
603 |
| 19 |
MX008d09_r |
BP086417 |
114 |
489 |
| 20 |
MXL063h06_r |
BP096731 |
115 |
513 |
| 21 |
MXL068h08_r |
BP097030 |
116 |
536 |
| 22 |
CM024b12_r |
AV388237 |
117 |
692 |
| 23 |
MXL076a11_r |
BP097459 |
117 |
485 |
| 24 |
MX013c10_r |
BP086633 |
117 |
514 |
| 25 |
HC085g07_r |
AV638389 |
117 |
618 |
| 26 |
HC026d11_r |
AV633881 |
117 |
604 |
| 27 |
CM060c10_r |
AV390751 |
121 |
733 |
| 28 |
CL37a12_r |
AV395231 |
121 |
604 |
| 29 |
HC089f01_r |
AV638699 |
124 |
628 |
| 30 |
HCL032e10_r |
AV641377 |
124 |
498 |
| 31 |
MXL014c09_r |
BP093820 |
124 |
618 |
| 32 |
CM080c08_r |
AV392070 |
127 |
640 |
| 33 |
HC091a04_r |
AV638802 |
127 |
535 |
| 34 |
HC056g01_r |
AV636225 |
130 |
541 |
| 35 |
CL02g05_r |
AV397598 |
131 |
693 |
| 36 |
HC075d05_r |
AV637614 |
137 |
628 |
| 37 |
MX245f05_r |
BP091880 |
149 |
607 |
| 38 |
CM023e02_r |
AV387790 |
305 |
884 |
| 39 |
HCL092b11_r |
AV644685 |
335 |
787 |
| 40 |
CL47b07_r |
AV395706 |
360 |
830 |
| 41 |
LCL098f03_r |
AV631714 |
562 |
882 |
| 42 |
LCL092c12_r |
AV631343 |
685 |
867 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute