KCC000047A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000047A_C01 KCC000047A_c01
cggggcaagcggctgcggactgtgcagggatggcagcgcgcgccttttgtggtgtggtga
gcacagggcGAGGGGACGGAAGATGCTTTTGCGTCGGCGCACGGAAAGCCGGGGGCGGGG
TCATATGCCCTGCACACACGGGGGCGTTGATGAAGTGTGCACGGGGCGCGCTACCGGTTC
TGGGGGGGAGTAAGAGCTTGTATGAACTGGACTGGCATCGCTGCGTGTGCGTGTCTGGGA
GCCAGCTGCGTCTGGCGTGTGTCCCGGAGTTTTCGTGCTCGCTTCCGGGCCTCAGCCGTC
CCCTTGTCCTGATCAATCCTAATGAGGGCGTTACGTGAAGAGAGATCCTATACCTATCAT
CGAGTAGATCGTGGAGGGGTCGGCGGCGGTTGCTTTGGGCGTCGCCGCCGCCGCCTCACT
CCGAGACGTAATGTCTGTGCCCCCATGCCGGCATGCGGCGCGGGAGGCCTCGGAGAACTC
GAGGTTGTGCGGAGCAGGCCGCGAATTTGAAGCGGCCCTAGTTCTGGCACGCCCTCACAC
ATTGGTCGTGAGCGGTGGAGACGGTGCGGAGGGCTTGGTTTTGCTGATCGGCAGGGCTGC
CTCCGTCCGTGGGTTGATTCGGCTTTTGTCTCAGGCGGGGTACTGGTAGCCTCTAGACTG
GGCAAAAGTAGGCTTAAAAACTTGAAACATACGTCGTAGTTTGTGGGTACAGAAGTATTT
CTTTTGTGGTTGGTTGAGACTGAATGCGCACCTGGTATGGGTGTTGGTGAGGGTTCTCCC
CTGCCGCGGACGCTAAGCCACGCTGGCATGCCCACGGGGCGGTCGGCAGCTTGCGCCGTC
ACATGGATATGCAGGCAGCAGCACTCGGGAGGGCGGGTGGATGTGCGCGTGATGCGTTCC
CCCGCCTGCCCGTGCCCGTGCCGCCTTCCATAACACAGAGCAGGAGGATGGCGAGGGATA
AGAGTTGCTTGATACACAAATGTGTTTGATCTATGGGTTAAGTTGGTGCAACGGCTACGA
ATGGTACCCCGCAAGAGATGTGAGGTAACAACCGACGCAGAGGCGGTGGCGGAGAGGTCA
ACACGATGCAGTGGACGTGTGCCATGGGCATGGAGCGCGCGCGCCGGTGGCGGGCCGCAT
AGGCATATGCCCACGTGCGGCATGACCGTCTGCCGTGTCTGTAACCTGTTCGGCATGG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000047A_C01 KCC000047A_c01
(1198 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF64523.1| cervical mucin MUC5B [Homo sapiens] 49 2e-04
ref|XP_039877.6| similar to Mucin 5B precursor (Mucin 5 subtype ... 43 0.001
ref|NP_198672.1| protein kinase family [Arabidopsis thaliana] gi... 36 0.001
sp|Q9Y3L3|3BP1_HUMAN SH3-domain binding protein 1 (3BP-1) 44 0.007
ref|XP_352404.1| similar to contains similarity to cell wall-pla... 44 0.007
>gb|AAF64523.1| cervical mucin MUC5B [Homo sapiens]
Length = 716
Score = 48.9 bits (115), Expect = 2e-04
Identities = 48/162 (29%), Positives = 67/162 (40%), Gaps = 5/162 (3%)
Frame = -2
Query: 606 TEAALPISKTKPSAPSPPL-TTNV*GRARTRAASNSRP----APHNLEFSEASRAACRHG 442
T A P + + PS L TT+ T A ++ R +PH + + S + G
Sbjct: 68 TTATTPAATSNTVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLG 127
Query: 441 GTDITSRSEAAAATPKATAADPSTIYSMIGIGSLFT*RPH*D*SGQGDG*GPEASTKTPG 262
T IT S + TP AT +T +S + S PH S + P T TPG
Sbjct: 128 TTHITEPSTGTSHTPAATTG--TTQHSTPALSS-----PHPSSSRTTES-PPSPGTTTPG 179
Query: 261 HTPDAAGSQTRTRSDASPVHTSSYSPPEPVARPVHTSSTPPC 136
HT A S+T + S TS+ P P + P+ T T C
Sbjct: 180 HT--TATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGC 219
>ref|XP_039877.6| similar to Mucin 5B precursor (Mucin 5 subtype B, tracheobronchial)
(High molecular weight salivary mucin MG1) (Sublingual
gland mucin) [Homo sapiens]
Length = 5858
Score = 43.1 bits (100), Expect(2) = 0.001
Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 5/162 (3%)
Frame = -2
Query: 606 TEAALPISKTKPSAPSPPL-TTNV*GRARTRAASNSRP----APHNLEFSEASRAACRHG 442
T A P + + PS L TT+ T A ++ R +PH + + S + G
Sbjct: 2315 TTATTPAATSNTVTPSSALGTTHTPPVPNTMATTHGRSLPPSSPHTVRTAWTSATSGILG 2374
Query: 441 GTDITSRSEAAAATPKATAADPSTIYSMIGIGSLFT*RPH*D*SGQGDG*GPEASTKTPG 262
T IT S + T AT +T +S + S PH S + P T TPG
Sbjct: 2375 TTHITEPSTVTSHTLAATTG--TTQHSTPALSS-----PHP--SSRTTESPPSPGTTTPG 2425
Query: 261 HTPDAAGSQTRTRSDASPVHTSSYSPPEPVARPVHTSSTPPC 136
HT A S+T + S TS+ P P + P+ T T C
Sbjct: 2426 HT--TATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGC 2465
Score = 21.9 bits (45), Expect(2) = 0.001
Identities = 18/70 (25%), Positives = 26/70 (36%), Gaps = 5/70 (7%)
Frame = -3
Query: 806 PAWLSVRG----RGEP-SPTPIPGAHSVSTNHKRNTSVPTNYDVCFKFLSLLLPSLEATS 642
P W+S RG +P+ IPG T H T V ++ S + +
Sbjct: 2225 PVWISTTTTPTTRGSTVTPSSIPG-----TTHTATVLTTTTTTVATGSMATPSSSTQTSG 2279
Query: 641 TPPETKAEST 612
TPP +T
Sbjct: 2280 TPPSLTTTAT 2289
>ref|NP_198672.1| protein kinase family [Arabidopsis thaliana]
gi|10176824|dbj|BAB10146.1| contains similarity to
protein kinase~gene_id:MBB18.10 [Arabidopsis thaliana]
gi|15983497|gb|AAL11616.1|AF424623_1 AT5g38560/MBB18_10
[Arabidopsis thaliana] gi|18700153|gb|AAL77688.1|
AT5g38560/MBB18_10 [Arabidopsis thaliana]
gi|21360463|gb|AAM47347.1| AT5g38560/MBB18_10
[Arabidopsis thaliana]
Length = 681
Score = 36.2 bits (82), Expect(2) = 0.001
Identities = 29/92 (31%), Positives = 39/92 (41%), Gaps = 5/92 (5%)
Frame = -2
Query: 288 PEASTKTPGHTPDAAGSQTRTR--SDASPVHTSSYSPPEPVAR---PVHTSSTPPCVQGI 124
P+ S PG TP G S ++P T++ SPP P A P ++ T P
Sbjct: 135 PKPSPSPPGETPSPPGETPSPPKPSPSTPTPTTTTSPPPPPATSASPPSSNPTDPSTLAP 194
Query: 123 *PRPRLSVRRRKSIFRPLALCSPHHKRRALPS 28
P P V R K I +P S ++ LPS
Sbjct: 195 PPTPLPVVPREKPIAKPTGPAS-NNGNNTLPS 225
Score = 28.9 bits (63), Expect(2) = 0.001
Identities = 31/117 (26%), Positives = 40/117 (33%), Gaps = 13/117 (11%)
Frame = -3
Query: 677 LSLLLP--SLEATSTPPETKAESTHGRRQPCRSAKPSPPHRLHR-----------SRPMC 537
L +L P S +T+ PP + + T P + PSPP S P
Sbjct: 7 LPILSPPSSNSSTTAPPPLQTQPTTPSAPPPVTPPPSPPQSPPPVVSSSPPPPVVSSPPP 66
Query: 536 EGVPELGPLQIRGLLRTTSSSPRPPAPHAGMGAQTLRLGVRRRRRRPKQPPPTPPRS 366
P P I T +SSP PP A T P PP PP++
Sbjct: 67 SSSPPPSPPVITSPPPTVASSPPPPVVIASPPPST-----------PATTPPAPPQT 112
>sp|Q9Y3L3|3BP1_HUMAN SH3-domain binding protein 1 (3BP-1)
Length = 622
Score = 43.5 bits (101), Expect = 0.007
Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 5/139 (3%)
Frame = -3
Query: 773 PSPTPIPGAHSVSTNHKRNTSVPTNYDVCFKFLSLLLPSLEATSTPPETKAESTHGRRQP 594
P+P P P S +T + + VP S + T +PPET A R
Sbjct: 438 PAPAPAPALASAATKERTESEVPPR-----------PASPKVTRSPPETAAPVEDMAR-- 484
Query: 593 CRSAKPSPPHRLHRSRPMCEGVPELGPLQIRGLLRTTSSSPRPPAPHAGMGAQTLRLGVR 414
R+ +P+P P + P Q+ G + SS P PP P G G+ +
Sbjct: 485 -RTKRPAPAR------------PTMPPPQVSG---SRSSPPAPPLP-PGSGSPGTPQALP 527
Query: 413 RR-----RRRPKQPPPTPP 372
RR R P PPP PP
Sbjct: 528 RRLVGSSLRAPTVPPPLPP 546
>ref|XP_352404.1| similar to contains similarity to cell wall-plasma membrane linker
protein~gene_id:MKA23.5 [Homo sapiens]
Length = 1000
Score = 43.5 bits (101), Expect = 0.007
Identities = 69/268 (25%), Positives = 90/268 (32%), Gaps = 19/268 (7%)
Frame = -3
Query: 1133 PPPARALHAHGTRPLHRVDLSATASASVVTSHLLRGT--IRSRCTNLT---------HRS 987
PPP R H P + S +S S H + +RS T T HR
Sbjct: 331 PPPQRPHH-----PDSVLTASTASSLSPQCPHCVHSVLNVRSALTAPTASSPPPQRPHRP 385
Query: 986 NTFVYQATLIPRHPPALCYGRRHGHGQAGERITRTSTRPPECCCLHIHVTAQAAD----- 822
++ V A PP R HG T S RP H +TA A
Sbjct: 386 DS-VLTAPTASSPPPQ----RPHGVHSVLTAPTAPSPRPQRPHRPHSVLTAPTASSPPPQ 440
Query: 821 RPVGMPAWLSVRGRGEPSPTPIPGAHSVSTNHKRNTSVPTNYDVCFKFLSLLLPSLEATS 642
RP G+ + L+ PSP HSV T + P L+ L
Sbjct: 441 RPHGVHSVLTASTASSPSPQCPHRVHSVLTAPTAPSPRPQRPHRVHSVLTALTAPSPRPQ 500
Query: 641 TPPETKAESTHGRRQPCRSAKPSPPHRLHR--SRPMCEGVPELGPLQIRGLLRT-TSSSP 471
P + T S +P PHR+H + P P ++ +L T+ SP
Sbjct: 501 RPHRVHSVLTV---PTASSRRPQRPHRVHSVLTAPTASSQRPQRPHRVHSVLTAPTAPSP 557
Query: 470 RPPAPHAGMGAQTLRLGVRRRRRRPKQP 387
RP PH T R R+RP P
Sbjct: 558 RPQRPHRPDSVLTAPTASSRPRQRPHGP 585
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MX062a02_r |
BP088498 |
1 |
338 |
2 |
MX067d04_r |
BP088726 |
70 |
403 |
3 |
HC020g03_r |
AV633432 |
118 |
382 |
4 |
HC043e12_r |
AV635227 |
241 |
723 |
5 |
CL02d03_r |
AV397618 |
611 |
1140 |
6 |
HCL008h11_r |
AV640021 |
613 |
1133 |
7 |
HCL007a06_r |
AV639907 |
756 |
1200 |
8 |
LCL084a04_r |
AV630763 |
926 |
1241 |
9 |
LCL013g09_r |
AV626692 |
944 |
1194 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute