KCC000034A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000034A_C01 KCC000034A_c01
TCACCATGCCGCCGAAGTTTGACCCCAGTGATGTGGTGGAGGTGTGCGTGCGTGTGACCG
GTGGTGAGGTGGGTGCCGCCTCCTCGCTGGCCCCTAAGATTGGTCCGCTGGGTCTGTCCC
CCAAGAAGATTGGTGAGGACATCGCTAAGGAGACCCTGAAGGACTGGAAGGGCCTGCGCA
TCACCGTCAAGCTCACTGTCCAGAACCGTCAGGCGAAGATTTCGGTCATTCCCTCGGCGG
CCGCGCTGGTCATCAAGGCCCTGAAGGAGCCCGCCCGCGACCGCAAGAAGGAGAAGAACA
TCAAGCACACTGGCAGCGTGACGATGTCGGACATCATCGAGATTGCCCGCGTCATGCGGC
CGCGCAGCTGCGCCAAGGACCTGGCGAACGGCTGCAAGGAGATCCTGGGGACAGCCGTGT
CGGTCGGCTGCAAGGTGGACGGCAAGGACCCCCGCGACGTCATCTCCGCCATCGACGACG
GCGCCATCGAGATCCCCGACGCTTAAGCGCGGGGCGTGTTGCAGCGGCAGGGAAGAGCAG
CTGATGATGATCAAGGGTGTGCTGTAACGTCTGTGCGAAGT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000034A_C01 KCC000034A_c01
(581 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P50884|RL12_CHLRE 60S RIBOSOMAL PROTEIN L12 gi|7440807|pir||T... 304 7e-82
emb|CAE03942.1| OSJNBa0093F12.16 [Oryza sativa (japonica cultiva... 261 4e-69
ref|NP_181256.1| 60S ribosomal protein L12 (RPL12A) [Arabidopsis... 257 7e-68
sp|O50003|RL12_PRUAR 60S RIBOSOMAL PROTEIN L12 gi|2677830|gb|AAB... 255 3e-67
ref|NP_190911.1| 60S ribosomal protein L12 (RPL12B) [Arabidopsis... 255 3e-67
>sp|P50884|RL12_CHLRE 60S RIBOSOMAL PROTEIN L12 gi|7440807|pir||T08157 ribosomal protein
L12 - Chlamydomonas reinhardtii (fragment)
gi|1167828|emb|CAA64626.1| 60S ribosomal protein L12
[Chlamydomonas reinhardtii]
Length = 157
Score = 304 bits (778), Expect = 7e-82
Identities = 156/157 (99%), Positives = 156/157 (99%)
Frame = +3
Query: 33 VVEVCVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 212
VVEVCVRVTGGEVG ASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ
Sbjct: 1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60
Query: 213 AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 392
AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG
Sbjct: 61 AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 120
Query: 393 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIPDA 503
CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIPDA
Sbjct: 121 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIPDA 157
>emb|CAE03942.1| OSJNBa0093F12.16 [Oryza sativa (japonica cultivar-group)]
Length = 166
Score = 261 bits (668), Expect = 4e-69
Identities = 129/166 (77%), Positives = 146/166 (87%)
Frame = +3
Query: 6 MPPKFDPSDVVEVCVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRIT 185
MPPK DP+ VV+V VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET KDWKGLR+T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 186 VKLTVQNRQAKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPR 365
VKLTVQNRQAK+SV+PSAAALVIKALKEP RDRKK KNIKH+G++++ D+IEIAR+MR R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120
Query: 366 SCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIPDA 503
S AK++A KEILGT VSVGC VDGKDP+D+ I DG +EIP A
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEIPSA 166
>ref|NP_181256.1| 60S ribosomal protein L12 (RPL12A) [Arabidopsis thaliana]
gi|19884128|sp|P50883|RL12_ARATH 60S ribosomal protein
L12 gi|25295163|pir||F84789 60S ribosomal protein L12
[imported] - Arabidopsis thaliana
gi|4371282|gb|AAD18140.1| 60S ribosomal protein L12
[Arabidopsis thaliana]
gi|13926286|gb|AAK49612.1|AF372896_1 At2g37190/T2N18.5
[Arabidopsis thaliana] gi|21592414|gb|AAM64365.1| 60S
ribosomal protein L12 [Arabidopsis thaliana]
gi|27363340|gb|AAO11589.1| At2g37190/T2N18.5
[Arabidopsis thaliana]
Length = 166
Score = 257 bits (657), Expect = 7e-68
Identities = 124/165 (75%), Positives = 144/165 (87%)
Frame = +3
Query: 6 MPPKFDPSDVVEVCVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRIT 185
MPPK DPS +V+V VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKET K+WKGLR+T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 186 VKLTVQNRQAKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPR 365
VKLTVQNRQAK++V+PSAAALVIKALKEP RDRKK KNIKH G+++ D+ EIAR+MRPR
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 366 SCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIPD 500
S AK+L+ +EILGT VSVGC VDGKDP+D+ I DG +EIP+
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPE 165
>sp|O50003|RL12_PRUAR 60S RIBOSOMAL PROTEIN L12 gi|2677830|gb|AAB97143.1| ribosomal
protein L12 [Prunus armeniaca]
Length = 166
Score = 255 bits (652), Expect = 3e-67
Identities = 127/164 (77%), Positives = 143/164 (86%)
Frame = +3
Query: 6 MPPKFDPSDVVEVCVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRIT 185
MPPKFDPS VV+V VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKET DWKGLR+T
Sbjct: 1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60
Query: 186 VKLTVQNRQAKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPR 365
VKLTVQNRQAK+SV+PSAAALVIKALKEP RDRKK KNIKH+G +++ D+IEIA++M+ R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120
Query: 366 SCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIP 497
S AK+LA KEIL T VSVGC VDGKDP+D+ I DG +EIP
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIP 164
>ref|NP_190911.1| 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana]
gi|11276750|pir||T45883 60S RIBOSOMAL PROTEIN L12-like -
Arabidopsis thaliana gi|6729494|emb|CAB67650.1| 60S
RIBOSOMAL PROTEIN L12-like [Arabidopsis thaliana]
gi|22655306|gb|AAM98243.1| 60S ribosomal protein
L12-like protein [Arabidopsis thaliana]
gi|27311969|gb|AAO00950.1| 60S ribosomal protein
L12-like protein [Arabidopsis thaliana]
Length = 166
Score = 255 bits (652), Expect = 3e-67
Identities = 124/165 (75%), Positives = 144/165 (87%)
Frame = +3
Query: 6 MPPKFDPSDVVEVCVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRIT 185
MPPK DPS +V+V VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKET K+WKGLR+T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 186 VKLTVQNRQAKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPR 365
VKLTVQNRQAK++V+PSAAALVIKALKEP RDRKK KNIKH G+++ D+ EIAR+MRPR
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 366 SCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIPD 500
S AK+L+ +EILGT VSVGC VDGKDP+D+ I +G IEIP+
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPE 165
EST assemble image
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|
|
|
clone |
accession |
position |
1 |
CL45b11_r |
AV397796 |
1 |
629 |
2 |
MXL057f06_r |
BP096370 |
7 |
517 |
3 |
CL34f12_r |
AV394942 |
11 |
639 |
4 |
CL21b03_r |
AV394338 |
12 |
624 |
5 |
CM061g04_r |
AV390609 |
81 |
692 |
6 |
MXL099a03_r |
BP098778 |
82 |
466 |
7 |
MXL043c01_r |
BP095525 |
82 |
460 |
8 |
LC082h01_r |
AV624794 |
83 |
629 |
9 |
LC063a05_r |
AV623386 |
84 |
610 |
10 |
HCL064g03_r |
AV643154 |
84 |
596 |
11 |
CL50c09_r |
AV395755 |
84 |
566 |
12 |
MXL004h07_r |
BP093199 |
84 |
418 |
13 |
CM009d01_r |
AV397657 |
85 |
663 |
14 |
HC082h12_r |
AV638183 |
86 |
528 |
15 |
LC096g10_r |
AV625714 |
86 |
537 |
16 |
MXL054b04_r |
BP096179 |
86 |
200 |
17 |
CM012c09_r |
AV387140 |
88 |
535 |
18 |
HC035h02_r |
AV634634 |
88 |
597 |
19 |
HC076d03_r |
AV637696 |
88 |
544 |
20 |
CL15a10_r |
AV393941 |
89 |
572 |
21 |
CL13h06_r |
AV393913 |
89 |
610 |
22 |
CL33b09_r |
AV394948 |
89 |
639 |
23 |
MX048c09_r |
BP087971 |
92 |
317 |
24 |
CM056d01_r |
AV390284 |
93 |
601 |
25 |
HCL036d07_r |
AV641565 |
95 |
575 |
26 |
CL33g02_r |
AV394993 |
95 |
628 |
27 |
CS001h12_r |
AV397974 |
95 |
677 |
28 |
CL58c04_r |
AV396196 |
95 |
484 |
29 |
MXL054a05_r |
BP096171 |
96 |
535 |
30 |
CL67b08_r |
AV396692 |
96 |
677 |
31 |
CL37e05_r |
AV395271 |
98 |
604 |
32 |
CL25d05_r |
AV394519 |
100 |
640 |
33 |
CL31f01_r |
AV395041 |
100 |
663 |
34 |
CL75h08_r |
AV397085 |
100 |
605 |
35 |
CL20b08_r |
AV394331 |
100 |
666 |
36 |
CL33b10_r |
AV394952 |
100 |
602 |
37 |
CM085g12_r |
AV392411 |
100 |
575 |
38 |
HCL056h04_r |
AV642730 |
100 |
629 |
39 |
CM099d07_r |
AV393118 |
101 |
629 |
40 |
CL21h05_r |
AV394384 |
102 |
648 |
41 |
CL02b01_r |
AV397593 |
102 |
663 |
42 |
CL55h08_r |
AV396030 |
102 |
637 |
43 |
CL66a01_r |
AV396735 |
102 |
649 |
44 |
CL01h07_r |
AV393330 |
106 |
640 |
45 |
CL20f08_r |
AV394334 |
109 |
629 |
46 |
CS001d09_r |
AV398017 |
109 |
358 |
47 |
CM031f03_r |
AV388301 |
109 |
411 |
48 |
CL25f04_r |
AV394526 |
109 |
654 |
49 |
CL45c03_r |
AV397768 |
109 |
622 |
50 |
CL59c03_r |
AV397903 |
109 |
692 |
51 |
CL44e06_r |
AV395591 |
110 |
566 |
52 |
CL53g12_r |
AV395988 |
111 |
679 |
53 |
CL43c01_r |
AV395533 |
120 |
651 |
54 |
HC094c12_r |
AV639047 |
121 |
561 |
55 |
CL27e07_r |
AV394731 |
122 |
652 |
56 |
MXL096b02_r |
BP098599 |
129 |
536 |
57 |
CL64b06_r |
AV396656 |
131 |
689 |
58 |
CL11c02_r |
AV393754 |
142 |
664 |
59 |
HC100f07_r |
AV639535 |
153 |
609 |
60 |
CL68d04_r |
AV396943 |
153 |
667 |
61 |
CL55d02_r |
AV396050 |
159 |
598 |
62 |
CS001a08_r |
AV397941 |
161 |
708 |
63 |
CL75a03_r |
AV397091 |
166 |
717 |
64 |
CL52a10_r |
AV395872 |
167 |
514 |
65 |
CM026h12_r |
AV387531 |
178 |
679 |
66 |
CL17c09_r |
AV394111 |
180 |
693 |
67 |
CL25b04_r |
AV394521 |
185 |
701 |
68 |
CL60d07_r |
AV396352 |
197 |
791 |
69 |
CL18d05_r |
AV394056 |
197 |
693 |
70 |
CL03d01_r |
AV393412 |
203 |
692 |
71 |
CL40h05_r |
AV395347 |
203 |
692 |
72 |
CL67b06_r |
AV396677 |
220 |
693 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute