KCC000018A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000018A_C01 KCC000018A_c01
CCGGCCTTTTACTTATCATCTTACACACTGCCCTTGGGTAGTGATCAGCCTGTGATCCGG
AACAATGAGTGAGGCTGTGAACCCGAAGGCCTACCCGCTGGCGGATGCCCAGTTGACCAA
CACCATCCTGGACATCGTCCAGCAGGCGGCCAACTATAAGCAGCTGAAGAAGGGTGCCAA
CGAGGCGACGAAGACTCTGAACCGCGGCATTTCCGAGTTTGTCGTTATGGCCGCCGACAC
GGAGCCTATTGAGATTCTGCTGCACCTGCCCCTGTTGGCTGAGGACAAGAACGTGCCCTA
CGTGTTTGTCCCCAGCAAGGCGGCGCTGGGTCGCGCATGCGGCGTGTCGCGCCCGGTTAT
CGCGGCCTCCGTCACCACCAACGAGGGCAGCCAGCTGAAGCCCCAGATTCAGAACCTCAA
GGGTGCCATCGAGAAGCTGCTCATCTAGAGGGCTCAGCAGCCTGGACAGTGCCTGGGACG
TGCTGGCTGCAACGCCAGACCCCATCCCGCACTCGGGATCCCGGTCGCCAGTTTTCACTG
TTGCGGCGGACCCGTAATCCACTGTAACCCATACGACACCt
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000018A_C01 KCC000018A_c01
(581 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64816.1| Ribosomal protein L7Ae-like [Arabidopsis thaliana] 215 4e-55
ref|NP_197516.1| ribosomal protein L7Ae family [Arabidopsis thal... 213 1e-54
ref|NP_193969.1| Ribosomal protein L7Ae family [Arabidopsis thal... 213 2e-54
ref|NP_192997.1| ribosomal protein L7Ae family [Arabidopsis thal... 212 3e-54
gb|AAH46579.1| Similar to NHP2 non-histone chromosome protein 2-... 206 1e-52
>gb|AAM64816.1| Ribosomal protein L7Ae-like [Arabidopsis thaliana]
Length = 128
Score = 215 bits (547), Expect = 4e-55
Identities = 109/125 (87%), Positives = 117/125 (93%)
Frame = +2
Query: 71 EAVNPKAYPLADAQLTNTILDIVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPI 250
E VNPKAYPLAD+QL+ TILD+VQQA NYKQLKKGANEATKTLNRGISEF+VMAADTEP+
Sbjct: 4 EGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTEPL 63
Query: 251 EILLHLPLLAEDKNVPYVFVPSKAALGRACGVSRPVIAASVTTNEGSQLKPQIQNLKGAI 430
EILLHLPLLAEDKNVPYVFVPSK ALGRACGV+RPVIA SVT+NE SQLK QIQ+LK AI
Sbjct: 64 EILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAI 123
Query: 431 EKLLI 445
EKLLI
Sbjct: 124 EKLLI 128
>ref|NP_197516.1| ribosomal protein L7Ae family [Arabidopsis thaliana]
gi|15081642|gb|AAK82476.1| AT5g20160/F5O24_50
[Arabidopsis thaliana] gi|20334836|gb|AAM16174.1|
AT5g20160/F5O24_50 [Arabidopsis thaliana]
gi|21592608|gb|AAM64557.1| ribosomal protein L7Ae-like
[Arabidopsis thaliana]
Length = 128
Score = 213 bits (543), Expect = 1e-54
Identities = 109/125 (87%), Positives = 116/125 (92%)
Frame = +2
Query: 71 EAVNPKAYPLADAQLTNTILDIVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPI 250
E VNPKAYPLAD+QL+ TILD+VQQA NYKQLKKGANEATKTLNRGISEFVVMAAD EP+
Sbjct: 4 EVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPL 63
Query: 251 EILLHLPLLAEDKNVPYVFVPSKAALGRACGVSRPVIAASVTTNEGSQLKPQIQNLKGAI 430
EILLHLPLLAEDKNVPYVFVPSK ALGRACGV+RPVIA SVT+NE SQLK QIQ+LK AI
Sbjct: 64 EILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAI 123
Query: 431 EKLLI 445
EKLLI
Sbjct: 124 EKLLI 128
>ref|NP_193969.1| Ribosomal protein L7Ae family [Arabidopsis thaliana]
gi|21554922|gb|AAM63731.1| Ribosomal protein L7Ae-like
[Arabidopsis thaliana]
Length = 128
Score = 213 bits (541), Expect = 2e-54
Identities = 108/125 (86%), Positives = 116/125 (92%)
Frame = +2
Query: 71 EAVNPKAYPLADAQLTNTILDIVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPI 250
E VNPKAYPLAD+QL+ TI+D+VQQA NYKQLKKGANEATKTLNRGISEFVVMAAD EP+
Sbjct: 4 EVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPL 63
Query: 251 EILLHLPLLAEDKNVPYVFVPSKAALGRACGVSRPVIAASVTTNEGSQLKPQIQNLKGAI 430
EILLHLPLLAEDKNVPYVFVPSK ALGRACGV+RPVIA SVT+NE SQLK QIQ+LK AI
Sbjct: 64 EILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAI 123
Query: 431 EKLLI 445
EKLLI
Sbjct: 124 EKLLI 128
>ref|NP_192997.1| ribosomal protein L7Ae family [Arabidopsis thaliana]
gi|25295060|pir||C85135 Ribosomal protein L7Ae-like
[imported] - Arabidopsis thaliana
gi|5823571|emb|CAB53753.1| Ribosomal protein L7Ae-like
[Arabidopsis thaliana] gi|7267962|emb|CAB78303.1|
Ribosomal protein L7Ae-like [Arabidopsis thaliana]
gi|13605585|gb|AAK32786.1|AF361618_1 AT4g12600/T1P17_190
[Arabidopsis thaliana] gi|15777869|gb|AAL05895.1|
AT4g12600/T1P17_190 [Arabidopsis thaliana]
Length = 128
Score = 212 bits (540), Expect = 3e-54
Identities = 108/125 (86%), Positives = 116/125 (92%)
Frame = +2
Query: 71 EAVNPKAYPLADAQLTNTILDIVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPI 250
E VNPKAYPLAD+QL+ TILD+VQQA NYKQLKKGANEATKTLNRGISEF+VMAADTEP+
Sbjct: 4 EGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTEPL 63
Query: 251 EILLHLPLLAEDKNVPYVFVPSKAALGRACGVSRPVIAASVTTNEGSQLKPQIQNLKGAI 430
EILLHLPLLAEDKNVPYVFVPSK ALGRAC V+RPVIA SVT+NE SQLK QIQ+LK AI
Sbjct: 64 EILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAI 123
Query: 431 EKLLI 445
EKLLI
Sbjct: 124 EKLLI 128
>gb|AAH46579.1| Similar to NHP2 non-histone chromosome protein 2-like 1 (S.
cerevisiae) [Xenopus laevis]
Length = 128
Score = 206 bits (525), Expect = 1e-52
Identities = 102/123 (82%), Positives = 114/123 (91%)
Frame = +2
Query: 77 VNPKAYPLADAQLTNTILDIVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPIEI 256
VNPKAYPLADAQLT T+LD+VQQAANYKQL+KGANEATKTLNRGISEF+VMAAD EP+EI
Sbjct: 6 VNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGISEFIVMAADAEPLEI 65
Query: 257 LLHLPLLAEDKNVPYVFVPSKAALGRACGVSRPVIAASVTTNEGSQLKPQIQNLKGAIEK 436
+LHLPLL EDKNVPYVFV SK ALGRACGVSRPVI+ SVT EGSQLKPQIQ+++ AIE+
Sbjct: 66 ILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVISCSVTIKEGSQLKPQIQSVQQAIER 125
Query: 437 LLI 445
LL+
Sbjct: 126 LLV 128
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
CL47h08_r |
AV395705 |
1 |
551 |
2 |
CL10g01_r |
AV393673 |
2 |
603 |
3 |
CL79b02_r |
AV397169 |
22 |
560 |
4 |
MX235e07_r |
BP091218 |
46 |
598 |
5 |
CM076e02_r |
AV391726 |
73 |
670 |
6 |
LCL007b07_r |
AV626333 |
83 |
361 |
7 |
CL70g04_r |
AV396825 |
84 |
590 |
8 |
MX253d03_r |
BP092376 |
87 |
518 |
9 |
CL70g05_r |
AV396861 |
93 |
681 |
10 |
CL41a10_r |
AV395411 |
99 |
534 |
11 |
CL06f05_r |
AV393644 |
99 |
485 |
12 |
CL13g02_r |
AV393909 |
99 |
611 |
13 |
CL33g05_r |
AV394971 |
99 |
492 |
14 |
CL15g11_r |
AV393978 |
99 |
500 |
15 |
HC081f07_r |
AV638078 |
99 |
533 |
16 |
CL65d01_r |
AV396554 |
99 |
612 |
17 |
CL16c02_r |
AV394027 |
99 |
620 |
18 |
CL09f11_r |
AV393705 |
99 |
626 |
19 |
CL26e02_r |
AV394572 |
99 |
633 |
20 |
HC094d03_r |
AV639049 |
99 |
589 |
21 |
MXL023e06_r |
BP094466 |
99 |
586 |
22 |
MXL032c08_r |
BP094912 |
99 |
573 |
23 |
CL52f02_r |
AV395854 |
99 |
572 |
24 |
CL17h02_r |
AV394146 |
99 |
569 |
25 |
CM087c08_r |
AV392429 |
99 |
644 |
26 |
CL57d11_r |
AV396272 |
99 |
664 |
27 |
CL09e01_r |
AV393708 |
99 |
567 |
28 |
MX050h05_r |
BP088073 |
99 |
428 |
29 |
MXL080e08_r |
BP097736 |
99 |
482 |
30 |
CM070e07_r |
AV391311 |
99 |
612 |
31 |
CL01d05_r |
AV393316 |
99 |
514 |
32 |
CL80h01_r |
AV397300 |
99 |
613 |
33 |
CL79a02_r |
AV397168 |
99 |
618 |
34 |
HCL061d06_r |
AV642968 |
99 |
429 |
35 |
CL75f07_r |
AV397045 |
109 |
619 |
36 |
MXL096f12_r |
BP098636 |
119 |
589 |
37 |
CL74c12_r |
AV396498 |
138 |
673 |
38 |
CL19h07_r |
AV394191 |
139 |
646 |
39 |
CL62b05_r |
AV396430 |
139 |
662 |
40 |
CM001d12_r |
AV386490 |
139 |
681 |
41 |
CM052b03_r |
AV390539 |
142 |
687 |
42 |
MXL041g09_r |
BP095437 |
149 |
539 |
43 |
CL11g08_r |
AV393780 |
159 |
681 |
44 |
CL49h10_r |
AV397730 |
166 |
662 |
45 |
CL65g03_r |
AV396587 |
173 |
681 |
46 |
CL52g08_r |
AV395887 |
179 |
681 |
47 |
CL47d06_r |
AV395715 |
206 |
682 |
48 |
CL72b09_r |
AV397004 |
216 |
681 |
49 |
CM085b09_r |
AV392369 |
247 |
602 |
50 |
CL34e02_r |
AV394886 |
283 |
682 |
51 |
CL46h03_r |
AV395655 |
314 |
633 |
52 |
HCL002c08_r |
AV639640 |
342 |
681 |
53 |
HC011h04_r |
AV632727 |
448 |
682 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute