2011

1. An EST-SSR linkage map of Raphanus sativus and comparative genomics of the Brassicaceae.
   Shirasawa K, Oyama M, Hirakawa H, Sato S, Tabata S, Fujioka T, Kimizuka-Takagi C, Sasamoto S, Watanabe A, Kato M, Kishida Y, Kohara M, Takahashi C, Tsuruoka H, Wada T, Sakai T, Isobe S. (2011)
   DNA Research 18(4): 221-32.


2. SSR and EST-SSR-based genetic linkage map of cassava (Manihot esculenta Crantz).
   Sraphet S, Boonchanawiwat A, Thanyasiriwat T, Boonseng O, Tabata S, Sasamoto S, Shirasawa K, Isobe S, Lightfoot DA, Tangphatsornruang S, Triwitayakorn K. (2011)
   Theor Appl Genet. Apr;122(6): 1161-70.


3. Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.).
   Ravi K, Vadez V, Isobe S, Mir RR, Guo Y, Nigam SN, Gowda MV, Radhakrishnan T, Bertioli DJ, Knapp SJ, Varshney RK. (2011)
   Theor Appl Genet. Apr;122(6): 1119-32.


4. Survey of the genetic information carried in the genome of Eucalyptus camaldulensis.
   Hirakawa H, Nakamura Y, Kaneko T, Isobe S, Sakai H, Kato T, Hibino T, Sasamoto S, Watanabe A, Yamada M, Nakayama S, Fujishiro T, Kishida Y, Kohara M, Tabata S, Sato S. et al. (2011)
   Plant Biotechnology 28: 471-80.


5. Genome-wide phylogenetic analysis of Gluconobacter, Acetobacter, and Gluconacetobacter.
   Matsutani M, Hirakawa H, Yakushi T, Matsushita K. (2011)
   FEMS Microbiology Letters 315: 122-8.


6. Increased number of Arginine-based salt bridges contributes to the thermotolerance of thermotolerant acetic acid bacteria, Acetobacter tropicalis SKU1100.
   Matsutani M, Hirakawa H, Nishikura M, Soemphol W, Ali I.A., Yakushi T, Matsushita K. (2011)
   Biochem. Biophys. Res. Commun. 409: 120-4.


7. Classification of Bacteria Based on the Biases of Terminal Amino Acid Residues.
   Asada M, Hirakawa H, Kuhara S. (2011)
   Protein J. 30: 290-7.


8. The Lifestyle of the Segmented Filamentous Bacterium: A Non-Culturable Gut-Associated Immunostimulating Microbe Inferred by Whole-Genome Sequencing.
   Kuwahara T, Ogura Y, Oshima K, Kurokawa K, Ooka T, Hirakawa H, Itoh T, Nakayama-Imaohji H, Ichimura M, Itoh K, Ishifune C, Maekawa Y, Yasutomo K, Hattori M, Hayashi T. (2011)
   DNA Research 18: 291-303.


9. Genome-wide phylogenetic analysis of differences in thermotolerance among closely related Acetobacter pasteurianus strains.
   Matsutani M, Hirakawa H, Saichana N, Soemphol W, Yakushi T, Matsushita K. (2011)
   Microbiology 158: 229-39.


10. The first genetic maps for subterranean clover (Trifolium subterraneum L.) and comparative genomics with T. pratense L. and Medicago truncatula Gaertn. to identify new molecular markers for breeding.
    Ghamkhar K, Isobe S, Nichols PGH, Faithfull T, Ryan MH, Snowball R, Sato S and Appels. (2011)
    Molecular Breeding 5: 1-14.


11. Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L.
    Sato S, Hirakawa H, Isobe S, Fukai E, Watanabe A, Kato M, Kawashima K, Minami C, Muraki A, Nakazaki N, Takahashi C, Nakayama S, Kishida Y, Kohara M, Yamada M, Tsuruoka H, Sasamoto S, Tabata S, Aizu T, Toyoda A, Shin-i T, Minakuchi Y, Kohara Y, Fujiyama, A Tsuchimoto S, Kajiyama S, Makigano E, Ohmido N, Shibagaki N, Cartagena JA, Wada N, Kohinata T, Atefeh A, Yuasa S, Matsunaga S, Fukui K. (2011)
    DNA Research 18(1): 65-76.