2008

1. Complete genome sequence of Finegoldia magna.
   Goto T, Yamashita A, Hirakawa H, Matsutani M, Todo K, Ohshima K, Toh H, Miyamoto K, Kuhara S, Hattori M, Shimizu T, Akimoto S. (2008)
   DNA Research 15: 39-47.


2. Genome-wide analysis of Chlamydophila pneumoniae gene expression at the late stage of infection.
   Miura K, Toh H, Hirakawa H, Sugii M, Murata M, Nakai K, Tashiro K, Kuhara S, Azuma Y, Shirai M. (2008)
   DNA Research 15: 83-91.


3. Polymerase chain reaction detection of bacterial 16S rRNA gene in human blood.
   Moriyama K, Ando C, Tashiro K, Kuhara S, Okamura S, Nakano S, Takagi Y, Miki T, Nakashima Y, Hirakawa H. (2008)
   Microbiol Immunol. 52: 375-82.


4. Role of disulfide bonds in goose-type lysozyme.
   Kawamura S, Ohkuma M, Chijiiwa Y, Kohno D, Nakagawa H, Hirakawa H, Kuhara S, Torikata T. (2008)
   FEBS J. 275: 2818-30.


5. Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis.
   Naito M, Hirakawa H, Yamashita A, Ohara N, Shoji M, Yukitake H, Nakayama K, Toh H, Yoshimura F, Kuhara S, Hattori M, Hayashi T, Nakayama K. (2008)
   DNA Research 15: 215-25.


6. Evaluating protein sequence signatures inferred from protein-protein interaction data by gene ontology annotations.
   Maruyama O, Hirakawa H, Iwayanagi T, Ishida Y, Takeda S, Otomo J, Kuhara S. (2008)
   The IEEE International conference on Bioinformatics and Biomedicine 2008 (BIBM2008),417-20.


7. Catalytic reaction mechanism of goose egg-white lysozyme by molecular modeling of enzyme-substrate complex.
   Hirakawa H, Ochi A, Kawahara Y, Kawamura S, Torikata T, Kuhara S. (2008)
   J. Biochem. 144: 753-61.