2009

1. ORFeome cloning.
   Ohara O. (2009)
   Methods Mol Biol. 577: 3-9.


2. From transcriptome analysis to immunogenomics: current status and future direction.
   Ohara O. (2009)
   FEBS Lett. 583(11): 1662-7.


3. Modified multiple primer extension method.
   Yanagawa T, Koga H. (2009)
   Methods Mol Biol. 578: 425-35.


4. A case of familial Mediterranean fever associated with compound heterozygosity for the pyrin variant L110P-E148Q/M680I in Japan.
   Oshima K, Yamazaki K, Nakajima Y, Kobayashi A, Kato T, Ohara O, Agematsu K. (2009)
   Mod Rheumatol. 20(2): 193-5.


5. Prediction of candidate primary immunodeficiency disease genes using a support vector machine learning approach.
   Keerthikumar S, Bhadra S, Kandasamy K, Raju R, Ramachandra YL, Bhattacharyya C, Imai K, Ohara O, Mohan S, Pandey A. (2009)
   DNA Res. 16(6): 345-51.


6. Enhanced Th2 cell differentiation and allergen-induced airway inflammation in Zfp35-deficient mice.
   Kitajima M, Iwamura C, Miki-Hosokawa T, Shinoda K, Endo Y, Watanabe Y, Shinnakasu R, Hosokawa H, Hashimoto K, Motohashi S, Koseki H, Ohara O, Yamashita M, Nakayama T. (2009)
   J Immunol. 183(8): 5388-96.


7. Deficiency of the oxidative damage-specific DNA glycosylase NEIL1 leads to reduced germinal center B cell expansion.
   Mori H, Ouchida R, Hijikata A, Kitamura H, Ohara O, Li Y, Gao X, Yasui A, Lloyd RS, Wang JY. (2009)
   DNA Repair (Amst). 8(11): 1328-32.


8. The completion of the Mammalian Gene Collection (MGC).
   MGC Project Team, Temple G, Gerhard DS, Rasooly R, Feingold EA, Good PJ, Robinson C, Mandich A, Derge JG, Lewis J, Shoaf D, Collins FS, Jang W, Wagner L, Shenmen CM, Misquitta L, Schaefer CF, Buetow KH., Bonner TI, Yankie L, Ward M, Phan L, Astashyn A, Brown G, Farrell C, Hart J, Landrum M, Maidak BL, Murphy M, Murphy T, Rajput B, Riddick L, Webb D, Weber J, Wu W, Pruitt KD, Maglott D, Siepel A, Brejova B, Diekhans M, Harte R, Baertsch R, Kent J, Haussler D, Brent M, Langton L, Comstock CL, Stevens M, Wei C, van Baren MJ, Salehi-Ashtiani K, Murray RR, Ghamsari L, Mello E, Lin C, Pennacchio C, Schreiber K, Shapiro N, Marsh A, Pardes E, Moore T, Lebeau A, Muratet M, Simmons B, Kloske D, Sieja S, Hudson J, Sethupathy P, Brownstein M, Bhat N, Lazar J, Jacob H, Gruber CE, Smith MR, McPherson J, Garcia AM, Gunaratne PH, Wu J, Muzny D, Gibbs RA, Young AC, Bouffard GG, Blakesley RW, Mullikin J, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Hirst M, Zeng T, Tse K, Moksa M, Deng M, Ma K, Mah, D, Pang J, Taylor G, Chuah E, Deng A, Fichter K, Go A, Lee S, Wang J, Griffith M, Morin R, Moore RA, Mayo M, Munro S, Wagner S, Jones SJ, Holt RA, Marra MA, Lu S, Yang S, Hartigan J, Graf M, Wagner R, Letovksy S, Pulido JC, Robison K, Esposito D, Hartley J, Wall VE, Hopkins RF, Ohara O, Wiemann S. (2009)
   Genome Res. 19(12): 2324-33.


9. Two brothers with ataxia-telangiectasia-like disorder with lung adenocarcinoma.
   Uchisaka N, Takahashi N, Sato M, Kikuchi A, Mochizuki S, Imai K, Nonoyama S, Ohara O, Watanabe F, Mizutani S, Hanada R, Morio T. (2009)
   J Pediatr. 155(3): 435-8.


10. Structural and functional characterization of the NHR1 domain of the Drosophila neuralized E3 ligase in the notch signaling pathway.
    He F, Saito K, Kobayashi N, Harada T, Watanabe S, Kigawa T, Guntert P, Ohara O, Tanaka A, Unzai S, Muto Y, Yokoyama S. (2009)
    J Mol Biol. 393(2): 478-95.


11. Mina, an Il4 repressor, controls T helper type 2 bias.
    Okamoto M, Van Stry M, Chung L, Koyanagi M, Sun X, Suzuki Y, Ohara O, Kitamura H, Hijikata A, Kubo M, Bix M. (2009)
    Nat Immunol. 10(8): 872-9.


12. Dispensable role of protein 4.1B/DAL-1 in rodent adrenal medulla regarding generation of pheochromocytoma and plasmalemmal localization of TSLC1.
    Ohno N, Terada N, Komada M, Saitoh S, Costantini F, Pace V, Germann PG, Weber K, Yamakawa H, Ohara O, Ohno S. (2009)
    Biochim Biophys Acta. 1793(3): 506-15.


13. Novel subset of CD8{alpha}+ dendritic cells localized in the marginal zone is responsible for tolerance to cell-associated antigens.
    Qiu CH, Miyake Y, Kaise H, Kitamura H, Ohara O, Tanaka M. (2009)
    J Immunol. 182(7): 4127-36.


14. Naturally occurring regulatory dendritic cells regulate murine cutaneous chronic graft-versus-host disease.
    Sato K, Eizumi K, Fukaya T, Fujita S, Sato Y, Takagi H, Yamamoto M, Yamashita N, Hijikata A, Kitamura H, Ohara O, Yamasaki S, Saito T, Sato K. (2009)
    Blood. 113(19): 4780-9.


15. RAPID: Resource of Asian Primary Immunodeficiency Diseases.
    Keerthikumar S, Raju R, Kandasamy K, Hijikata A, Ramabadran S, Balakrishnan L, Ahmed M, Rani S, Selvan LD, Somanathan DS, Ray S, Bhattacharjee M, Gollapudi S, Ramachandra YL, Bhadra S, Bhattacharyya C, Imai K, Nonoyama S, Kanegane H, Miyawaki T, Pandey A, Ohara O, Mohan S. (2009)
    Nucleic Acids Res. 37(Database issue): D863-7.


16. Unique activation status of peripheral blood mononuclear cells at acute phase of Kawasaki disease.
    Ikeda K, Yamaguchi K, Tanaka T, Mizuno Y, Hijikata A, Ohara O, Takada H, Kusuhara K, Hara T. (2009)
    Clin Exp Immunol. 160(2): 246-55.


17. Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain.
    Otani J, Nankumo T, Arita K, Inamoto S, Ariyoshi M, Shirakawa M. (2009)
    EMBO Rep. 10(11): 1235-41.


18. The RNA-binding protein Mex3b has a fine-tuning system for mRNA regulation in early Xenopus development.
    Takada H, Kawana T, Ito Y, Kikuno RF, Mamada H, Araki T, Koga H, Asashima M, Taira M. (2009)
    Development. 136(14): 2413-22.


19. Evaluation of the effect of CpG hypermutability on human codon substitution.
    Misawa K, Kikuno RF. (2008)
    Gene. 431(1-2): 18-22.


20. PCDH24-induced contact inhibition involves downregulation of beta-catenin signaling.
    Ose R, Yanagawa T, Ikeda S, Ohara O, Koga H. (2009)
    Mol Oncol. 3(1): 54-66.