2010

1. Coexpression analysis of tomato genes and experimental verification of coordinated expression of genes found in a functionally enriched coexpression module.
   Ozaki S, Ogata Y, Suda K, Kurabayashi A, Suzuki T, Yamamoto N, Iijima Y, Tsugane T, Fujii T, Konishi C, Inai S, Bunsupa S, Yamazaki M, Shibata D, Aoki K. (2010)
   DNA Res. 17(2): 105-16


2. Metabolic alterations in organic acids and gamma-aminobutyric acid in developing tomato (Solanum lycopersicum L.) fruits.
   Yin YG, Tominaga T, Iijima Y, Aoki K, Shibata D, Ashihara H, Nishimura S, Ezura H, Matsukura C. (2010)
   Plant Cell Physiol. 51(8): 1300-14


3. CoP: a database for characterizing co-expressed gene modules with biological information in plants.
   Ogata Y, Suzuki H, Sakurai N, Shibata D. (2010)
   Bioinformatics. 26(9): 1267-8.


4. Transient increase in salicylic acid and its glucose conjugates after wounding in Arabidopsis leaves.
   Ogawa T, Ara T, Aoki K, Suzuki H, Shibata D. (2010)
   Plant Biotechnol. 27(2): 205-9.


5. MassBank: a public repository for sharing mass spectral data for life sciences.
   Horai H, Arita M, Kanaya S, Nihei Y, Ikeda T, Suwa K, Ojima Y, Tanaka K, Tanaka S, Aoshima K, Oda Y, Kakazu Y, Kusano M, Tohge T, Matsuda F, Sawada Y, Hirai MY, Nakanishi H, Ikeda K, Akimoto N, Maoka T, Takahashi H, Ara T, Sakurai N, Suzuki H, Shibata D, Neumann S, Iida T, Tanaka K, Funatsu K, Matsuura F, Soga T, Taguchi R, Saito K, Nishioka T. (2010)
   J Mass Spectrom. 45(7): 703-14.


6. Application of Fourier-transform ion cyclotron resonance mass spectrometry to metabolic profiling and metabolite identification.
   Ohta D, Kanaya S, Suzuki H. (2010)
   Curr Opin Biotechnol. 21(1): 35-44.


7. Microscale alkaline nitrobenzene oxidation method for high- throughput determination of lignin aromatic components.
   Yamamura M, Hattori T, Suzuki S, Shibata D, Umezawa T. (2010)
   Plant Biotechnol. 27(4): 305-10.


8. Generation of pink flower varieties from blue Torenia hybrida by redirecting the flavonoid biosynthetic pathway from delphinidin to pelargonidin.
   Nakamura N, Fukuchi-Mizutani M, Fukui Y, Ishiguro K, Suzuki K, Suzuki H, Okazaki K, Shibata D, Tanaka Y. (2010)
   Plant Biotechnol. 27(5): 375-83.


9. Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments.
   Aono E, Baba T, Ara T, Nishi T, Nakamichi T, Inamoto E, Toyonaga H, Hasegawa M, Takai Y, Okumura Y, Baba M, Tomita M, Kato C, Oshima T, Nakasone K, Mori H. (2010)
   Mol Biosyst. 6(7): 1216-26.


10. OryzaExpress: an integrated database of gene expression networks and omics annotations in rice.
    Hamada K, Hongo K, Suwabe K, Shimizu A, Nagayama T, Abe R, Kikuchi S, Yamamoto N, Fujii T, Yokoyama K, Tsuchida H, Sano K, Mochizuki T, Oki N, Horiuchi Y, Fujita M, Watanabe M, Matsuoka M, Kurata N, Yano K. (2010)
    Plant Cell Physiol. 52(2): 220-9.


11. Transcriptional control of the dihydroflavonol 4-reductase multigene family in Lotus japonicus.
    Yoshida, K, Iwasaka, R, Shimada, N, Ayabe, S, Aoki, T, Sakuta, M. (2010)
    J Plant Res. 123(6): 801-5.


12. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics.
    Aoki K, Yano K, Suzuki A, Kawamura S, Sakurai N, Suda K, Kurabayashi A, Suzuki T, Tsugane T, Watanabe M, Ooga K, Torii M, Narita T, Shin-I T, Kohara Y, Yamamoto N, Takahashi H, Watanabe Y, Egusa M, Kodama M, Ichinose Y, Kikuchi M, Fukushima S, Okabe A, Arie T, Sato Y, Yazawa K, Satoh S, Omura T, Ezura H, Shibata D. (2010)
    BMC Genomics. 11: 210