2011

1. Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6.
   Kaneko T, Maita H, Hirakawa H, Uchiike N, Minamisawa K, Watanabe A, Sato S. (2011)
   Genes 2: 763-87.


2. The genome of the mesopolyploid crop species Brassica rapa.
   Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ, Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z. Brassica rapa Genome Sequencing Project Consortium. (2011)
   Nat Genet. 43(10): 1035-9. doi: 10.1038/ng.919.


3. Survey of the genetic information carried in the genome of Eucalyptus camaldulensis.
   Hirakawa H, Nakamura Y, Kaneko T, Isobe S, Sakai H, Kato T, Hibino T, Sasamoto S, Watanabe A, Yamada M, Nakayama S, Fujishiro T, Kishida Y, Kohara M, Tabata S, Sato S. et al. (2011)
   Plant Biotechnology 28: 471-80.


4. An EST-SSR linkage map of Raphanus sativus and comparative genomics of the Brassicaceae.
   Shirasawa K, Oyama M, Hirakawa H, Sato S, Tabata S, Fujioka T, Kimizuka-Takagi C, Sasamoto S, Watanabe A, Kato M, Kishida Y, Kohara M, Takahashi C, Tsuruoka H, Wada T, Sakai T, Isobe S. (2011)
   DNA Research 18(4): 221-32.


5. The first genetic maps for subterranean clover (Trifolium subterraneum L.) and comparative genomics with T. pratense L. and Medicago truncatula Gaertn. to identify new molecular markers for breeding.
   Ghamkhar K, Isobe S, Nichols PGH, Faithfull T, Ryan MH, Snowball R, Sato S and Appels. (2011)
   Molecular Breeding 5: 1-14.


6. Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L.
   Sato S, Hirakawa H, Isobe S, Fukai E, Watanabe A, Kato M, Kawashima K, Minami C, Muraki A, Nakazaki N, Takahashi C, Nakayama S, Kishida Y, Kohara M, Yamada M, Tsuruoka H, Sasamoto S, Tabata S, Aizu T, Toyoda A, Shin-i T, Minakuchi Y, Kohara Y, Fujiyama, A Tsuchimoto S, Kajiyama S, Makigano E, Ohmido N, Shibagaki N, Cartagena JA, Wada N, Kohinata T, Atefeh A, Yuasa S, Matsunaga S, Fukui K. (2011)
   DNA Research 18(1): 65-76.


7. Lotus japonicus nodulation is photomorphogenetically controlled by sensing the red/far red (R/FR) ratio through jasmonic acid (JA) signaling.
   Suzuki A, Suriyagoda L, Shigeyama T, Tominaga A, Sasaki M, Hiratsuka Y, Yoshinaga A, Arima S, Agarie S, Sakai T, Inada S, Jikumaru Y, Kamiya Y, Uchiumi T, Abe M, Hashiguchi M, Akashi R, Sato S, Kaneko T, Tabata S, Hirsch AM. (2011)
   Proc Natl Acad Sci USA 108(40): 16837-42. Epub 2011 Sep 19.


8. Genomic structure of the cyanobacterium Synechocystis sp. PCC 6803 strain GT-S.
   Tajima N, Sato S, Maruyama F, Kaneko T, Sasaki NV, Kurokawa K, Ohta H, Kanesaki Y, Yoshikawa H, Tabata S, Ikeuchi M, Sato N. (2011)
   DNA Research 18(5): 393-9.


9. Arabidopsis RPT2a encoding the 26S proteasome subunit is required for various aspects of root meristem maintenance, and regulates gametogenesis redundantly with its homolog, RPT2b.
   Ueda M, Matsui K, Ishiguro S, Kato T, Tabata S, Kobayashi M, Seki M, Shinozaki K, Okada K. (2011)
   Plant Cell Physiol. 52(9): 1628-40.


10. Genomic clustering of cyanogenic glucoside biosynthetic genes aids their identification in Lotus japonicus and suggests the repeated evolution of this chemical defence pathway.
    Takos AM, Knudsen C, Lai D, Kannangara R, Mikkelsen L, Motawia MS, Olsen CE, Sato S, Tabata S, Jorgensen K, Moller BL, Rook F. (2011)
    Plant J. 68(2): 273-86.


11. Peroxiredoxins and NADPH-dependent thioredoxin systems in the model legume Lotus japonicus.
    Tovar-Mendez A, Matamoros MA, Bustos-Sanmamed P, Dietz KJ, Cejudo FJ, Rouhier N, Sato S, Tabata S, Becana M. (2011)
    Plant Physiol. 156(3): 1535-47.


12. Identification of Mesorhizobium loti genes relevant to symbiosis by using signature-tagged mutants.
    Borjigin N, Furukawa K, Shimoda Y, Tabata S, Sato S, Eda S, Minamisawa K, Mitsui H. (2011)
    Microbes Environ. 26(2): 165-71.


13. A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering.
    Watanabe S, Xia Z, Hideshima R, Tsubokura Y, Sato S, Yamanaka N, Takahashi R, Anai T, Tabata S, Kitamura K, Harada K. (2011)
    Genetics. 188(2): 395-407.


14. The Clavata2 genes of pea and Lotus japonicus affect autoregulation of nodulation.
    Krusell L, Sato N, Fukuhara I, Koch BE, Grossmann C, Okamoto S, Oka-Kira E, Otsubo Y, Aubert G, Nakagawa T, Sato S, Tabata S, Duc G, Parniske M, Wang TL, Kawaguchi M, Stougaard J. (2011)
    Plant J. 65(6): 861-71.


15. Activation of a Lotus japonicus subtilase gene during arbuscular mycorrhiza is dependent on the common symbiosis genes and two cis-active promoter regions.
    Takeda N, Haage K, Sato S, Tabata S, Parniske M. (2011)
    Mol Plant Microbe Interact. 24(6): 662-70.


16. Autoregulation of nodulation interferes with impacts of nitrogen fertilization levels on the leaf-associated bacterial community in soybeans.
    Ikeda S, Anda M, Inaba S, Eda S, Sato S, Sasaki K, Tabata S, Mitsui H, Sato T, Shinano T, Minamisawa K. (2011)
    Appl Environ Microbiol. 77(6): 1973-80.


17. Transcriptome analysis of respiration-responsive genes in Chlamydomonas reinhardtii: mitochondrial retrograde signaling coordinates the genes for cell proliferation with energy-producing metabolism.
    Matsuo M, Hachisu R, Tabata S, Fukuzawa H, Obokata J. (2011)
    Plant Cell Physiol. 52(2): 333-43.


18. Regulation of nonsymbiotic and truncated hemoglobin genes of Lotus japonicus in plant organs and in response to nitric oxide and hormones.
    Bustos-Sanmamed P, Tovar-Mendez A, Crespi M, Sato S, Tabata S, Becana M. (2011)
    New Phytol. 189(3): 765-76.


19. Lotus japonicus nodulation is photomorphogenetically controlled by sensing the red/far red (R/FR) ratio through jasmonic acid (JA) signaling.
    Suzuki A, Suriyagoda L, Shigeyama T, Tominaga A, Sasaki M, Hiratsuka Y, Yoshinaga A, Arima S, Agarie S, Sakai T, Inada S, Jikumaru Y, Kamiya Y, Uchiumi T, Abe M, Hashiguchi M, Akashi R, Sato S, Kaneko T, Tabata S, Hirsch AM. (2011)
    Proc Natl Acad Sci USA. 108(40): 16837-42.