2010

1. Structural analyses of the genomes in legumes.
   Sato S, Isobe S, and Tabata S. (2010)
   Curr Opin Plant Biol. 13: 146-52.


2. Complete genomic structure of the cultivated rice endophyte Azospirillum sp. B510.
   Kaneko, T., Minamisawa, K., Isawa, T., Nakatsukasa, H., Mitsui, H., Kawaharada, Y., Nakamura, Y., Watanabe, A., Kawashima, K., Ono, A., et al. (2010)
   DNA Research 17: 37-50.


3. An interspecific linkage map of SSR and intronic polymorphism markers in tomato.
   Shirasawa K, Asamizu E , Fukuoka H, Ohyama A, Sato S, Nakamura Y, Tabata S, Sasamoto S, Wada T, Kishida Y. et al. (2010)
   Theor Appl Genet. 121: 731-9.


4. CyanoBase: the cyanobacteria genome database update 2010.
   Nakao, M., Okamoto, S., Kohara, M., Fujishiro, T., Fujisawa, T., Sato, S., Tabata, S., Kaneko, T., and Nakamura, Y. (2010)
   Nucleic Acids Res 38: D379-81.


5. Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.
   Fujisawa, T., Narikawa, R., Okamoto, S., Ehira, S., Yoshimura, H., Suzuki, I., Masuda, T., Mochimaru, M., Takaichi, S., Awai, K., et al. (2010)
   DNA Research 17: 85-103.


6. Derepression of the plant Chromovirus LORE1 induces germline transposition in regenerated plants.
   Fukai, E., Umehara, Y., Sato, S., Endo, M., Kouchi, H., Hayashi, M., Stougaard, J., and Hirochika, H. (2010)
   PLoS Genet. 6: e1000868.


7. NENA, a Lotus japonicus homolog of Sec13, is required for rhizodermal infection by arbuscular mycorrhiza fungi and rhizobia but dispensable for cortical endosymbiotic development.
   Groth, M., Takeda, N., Perry, J., Uchida, H., Draxl, S., Brachmann, A., Sato, S., Tabata, S., Kawaguchi, M., Wang, T.L., et al. (2010)
   Plant Cell 22: 2509-26.


8. Community- and genome-based views of plant-associated bacteria: plant-bacterial interactions in soybean and rice.
   Ikeda, S., Okubo, T., Anda, M., Nakashita, H., Yasuda, M., Sato, S., Kaneko, T., Tabata, S., Eda, S., Momiyama, A., et al. (2010)
   Plant Cell Physiol. 51: 1398-410.


9. Community shifts of soybean stem-associated bacteria responding to different nodulation phenotypes and N levels.
   Ikeda, S., Okubo, T., Kaneko, T., Inaba, S., Maekawa, T., Eda, S., Sato, S., Tabata, S., Mitsui, H., and Minamisawa, K. (2010)
   ISME J. 4: 315-26.


10. Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome.
    Inagaki, S., Miura-Kamio, A., Nakamura, Y., Lu, F., Cui, X., Cao, X., vKimura, H., Saze, H., and Kakutani, T. (2010)
    EMBO J. 29: 3496-506.


11. Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the control of photoperiodic flowering in soybean.
    Kong, F., Liu, B., Xia, Z., Sato, S., Kim, B.M., Watanabe, S., Yamada, T., Tabata, S., Kanazawa, A., Harada, K., et al. (2010)
    Plant Physiol. 154: 1220-31.


12. Evolution and regulation of the Lotus japonicus LysM receptor gene family.
    Lohmann, G.V., Shimoda, Y., Nielsen, M.W., Jorgensen, F.G., Grossmann, C., Sandal, N., Sorensen, K., Thirup, S., Madsen, L.H., Tabata, S., et al. (2010)
    Mol Plant Microbe Interact. 23: 510-21.


13. The receptor-like kinase KLAVIER mediates systemic regulation of nodulation and non-symbiotic shoot development in Lotus japonicus.
    Miyazawa, H., Oka-Kira, E., Sato, N., Takahashi, H., Wu, G.J., Sato, S., Hayashi, M., Betsuyaku, S., Nakazono, M., Tabata, S., et al. (2010)
    Development 137: 4317-25.


14. Proteome analysis of pod and seed development in the model legume Lotus japonicus.
    Nautrup-Pedersen, G., Dam, S., Laursen, B.S., Siegumfeldt, A.L., Nielsen, K., Goffard, N., Staerfeldt, H.H., Friis, C., Sato, S., Tabata, S., et al. (2010)
    J Proteome Res. 9: 5715-26.


15. Integration of cytogenetic and genetic linkage maps of Lotus japonicus, a model plant for legumes.
    Ohmido, N., Ishimaru, A., Kato, S., Sato, S., Tabata, S., and Fukui, K. (2010)
    Chromosome Res. 18: 287-99.


16. Identification of a two-component VirR/VirS regulon in Clostridium perfringens.
    Ohtani, K., Hirakawa, H., Tashiro, K., Yoshizawa, S., Kuhara, S., and Shimizu, T. (2010)
    Anaerobe 16: 258-64.


17. Identification and functional analysis of type III effector proteins in Mesorhizobium loti.
    Okazaki, S., Okabe, S., Higashi, M., Shimoda, Y., Sato, S., Tabata, S., Hashiguchi, M., Akashi, R., Gottfert, M., and Saeki, K. (2010)
    Mol Plant Microbe Interact. 23: 223-34.


18. Genomewide characterization of the light-responsive and clock-controlled output pathways in Lotus japonicus with special emphasis of its uniqueness.
    Ono, N., Ishida, K., Yamashino, T., Nakanishi, H., Sato, S., Tabata, S., and Mizuno, T. (2010)
    Plant Cell Physiol. 51: 1800-14.


19. A suite of Lotus japonicus starch mutants reveals both conserved and novel features of starch metabolism.
    Vriet, C., Welham, T., Brachmann, A., Pike, M., Pike, J., Perry, J., Parniske, M., Sato, S., Tabata, S., Smith, A.M., et al. (2010)
    Plant Physiol. 154: 643-55.


20. The REDUCED LEAFLET genes encode key components of the trans-acting small interfering RNA pathway and regulate compound leaf and flower development in Lotus japonicus.
    Yan, J., Cai, X., Luo, J., Sato, S., Jiang, Q., Yang, J., Cao, X., Hu, X., Tabata, S., Gresshoff, P.M., et al. (2010)
    Plant Physiol. 152: 797-807.


21. X chromosome-wide analyses of genomic DNA methylation states and gene expression in male and female neutrophils.
    Yasukochi, Y., Maruyama, O., Mahajan, M.C., Padden, C., Euskirchen, G.M., Schulz, V., Hirakawa, H., Kuhara, S., Pan, X.H., Newburger, P.E., et al. (2010)
    Proc Natl Acad Sci USA 107: 3704-9.