hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/shimazu/full/sj/sj09927/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: sj09927 792 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PH Pleckstrin homology domain. 84.9 1e-20 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/2 245 342 .. 1 82 [] 41.1 1.5e-07 PH 2/2 443 538 .. 1 82 [] 44.3 1.6e-08 Alignments of top-scoring domains: PH: domain 1 of 2, from 245 to 342: score 41.1, E = 1.5e-07 *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk...kpkgsipLsg ++ +Ll+k+++++w k v+++++Ll+yks++++ p ++ L++ sj09927 245 CRICAFLLRKKrFgQWAKQLTVIREDQLLCYKSSkdrQPHLRLALDT 291 csvre.p......cFeivt.dr...tlllqAeseeereeWvealqsaiak cs+ p++++++ e++++++ +++l+l+ s e++eeW++ +++++++ sj09927 292 CSIIYvPkdsrhkRHELRFtQGateVLVLALQSREQAEEWLKVIREVSKP 341 a<-* sj09927 342 V 342 PH: domain 2 of 2, from 443 to 538: score 44.3, E = 1.6e-08 *->vikeGwLlkksk.swkkryfvLfngvLlyyksk....kpkgsipLsg v ++G+L ++ +++wk+r+++L+ ++L+++k++ + +++ i L+g sj09927 443 VPCCGYLNVLVNqGWKERWCRLKCNTLYFHKDHmdlrTHVNAIALQG 489 csvre.p......cFeivt.dr.tlllqAeseeereeWvealqsaiaka< c+v ++ +++++ +F+i + +++ +l A+ +e++ +W+ l + + sj09927 490 CEVAPgFgprhpfAFRILRnRQeVAILEASCSEDMGRWLGLLLVEMGSR 538 -* sj09927 - - //