hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sj/sj09927/interpro/cnk_1/seq.in
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Query:  sj09927  792

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     84.9      1e-20   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/2     245   342 ..     1    82 []    41.1  1.5e-07
PH         2/2     443   538 ..     1    82 []    44.3  1.6e-08

Alignments of top-scoring domains:
PH: domain 1 of 2, from 245 to 342: score 41.1, E = 1.5e-07
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk...kpkgsipLsg
                        ++ +Ll+k+++++w k   v+++++Ll+yks++++ p  ++ L++
     sj09927   245    CRICAFLLRKKrFgQWAKQLTVIREDQLLCYKSSkdrQPHLRLALDT 291  

                   csvre.p......cFeivt.dr...tlllqAeseeereeWvealqsaiak
                   cs+   p++++++  e++++++ +++l+l+  s e++eeW++ +++++++
     sj09927   292 CSIIYvPkdsrhkRHELRFtQGateVLVLALQSREQAEEWLKVIREVSKP 341  

                   a<-*
                       
     sj09927   342 V    342  

PH: domain 2 of 2, from 443 to 538: score 44.3, E = 1.6e-08
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk....kpkgsipLsg
                      v ++G+L ++ +++wk+r+++L+ ++L+++k++ + +++   i L+g
     sj09927   443    VPCCGYLNVLVNqGWKERWCRLKCNTLYFHKDHmdlrTHVNAIALQG 489  

                   csvre.p......cFeivt.dr.tlllqAeseeereeWvealqsaiaka<
                   c+v ++ +++++ +F+i  + +++ +l A+ +e++ +W+  l   + +  
     sj09927   490 CEVAPgFgprhpfAFRILRnRQeVAILEASCSEDMGRWLGLLLVEMGSR  538  

                   -*
                     
     sj09927     -    -    

//