hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sj/sj09927/interpro/cnk_1/seq.in
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Query:  sj09927  792

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PH        PH domain                                      91.4    1.8e-23   2
Vicilin_N Vicilin N terminal region                     -72.6       0.48   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PH          1/2     245   340 ..     1    92 []    41.0  2.7e-08
PH          2/2     443   536 ..     1    92 []    50.3  4.3e-11
Vicilin_N   1/1     576   677 ..     1   183 []   -72.6     0.48

Alignments of top-scoring domains:
PH: domain 1 of 2, from 245 to 340: score 41.0, E = 2.7e-08
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk.kkpkgsipLsg
                      + ++ +Ll+k ++++w k   v+++d+Ll+yk++k+ +p   + L++
     sj09927   245    CRICAFLLRKKRFGQWAKQLTVIREDQLLCYKSSKdRQPHLRLALDT 291  

                   iqvekvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkaiqsair<
                   +++ +vp+  r+   e+r++++ +e+l+l+  s e+++eW+k i+++++ 
     sj09927   292 CSIIYVPKDSRHKRHELRFtQGatEVLVLALQSREQAEEWLKVIREVSK  340  

                   -*
                     
     sj09927     -    -    

PH: domain 2 of 2, from 443 to 536: score 50.3, E = 4.3e-11
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk..kkpkgsipLs
                      v ++G+L +   + +wk+R++ L+ ++L+++kd  +  +++  i L+
     sj09927   443    VPCCGYLNVLV-NQGWKERWCRLKCNTLYFHKDHMdlRTHVNAIALQ 488  

                   giqvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<-
                   g++v +   ++++++F+i  + +e+ +l+a+ +e++ +W+  +  ++   
     sj09927   489 GCEVAPGFGPRHPFAFRILRnRQEVAILEASCSEDMGRWLGLLLVEMG   536  

                   *
                    
     sj09927     -   -    

Vicilin_N: domain 1 of 1, from 576 to 677: score -72.6, E = 0.48
                   *->pGRrnYeDDPqqrYEqCqRRCesetrGqrEQqqCEeRCkeqykEeqq
                      p  r Y+D P    ++     e  +r    Q +   R  + + E+  
     sj09927   576    PEPRVYDDVPYEKMQD-----EEPERPTGAQVK---RHASSCSEKSH 614  

                   qqRqReEDPQrrYeeCqqrCqqeETEeRhrptCqQrCerrYEkeqqqQQK
                   +      DPQ                                k ++    
     sj09927   615 RV-----DPQ-------------------------------VKVKRH--- 625  

                   RYEEQQREDEEKYEERmKEEDNKRDPqqRqyqeCQqRCqqQEQrPrrqQQ
                                             +  qy+  + R ++      r++ 
     sj09927   626 ------------------------ASSANQYKYGKNRAEEDA----RRYL 647  

                   CqReCREQYqEqqerGeeenknPQWReeeeersEEG<-*
                     +e  E+ +E   r   e++     + e+ +  E    
     sj09927   648 VEKEKLEKEKE-TIRT--ELI---ALRQEKRELKEA    677  

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